BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg350602
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14570.1 | Symbols: ATNRT2.7, NRT2.7 | high affinity nitrate... 2152 0.0
AT5G14565.1 | Symbols: MIR398C | MIR398C; miRNA | chr5:4694626-... 1773 0.0
> AT5G14570.1 | Symbols: ATNRT2.7, NRT2.7 | high affinity nitrate
transporter 2.7 | chr5:4695084-4697078 REVERSE LENGTH=1917
Length=1917
Score = 2152 bits (1165), Expect = 0.0
Identities = 1381/1485 (93%), Gaps = 15/1485 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCCATCTCAAGGCAACACTAAAACGCCGTCGTTTCCAGATTCCACTATCCCTGTG 60
||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||| ||
Sbjct 189 ATGGAGCCATCTCAACGCAACACCAAACCGCCGTCGTTTTCAGATTCCACTATCCCGGTT 248
Query 61 GATTCCGATGGCCGAGCCACCGTCTTCCGACCATTTTCTCTCTCCTCGCCGCACTCACGA 120
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 249 GATTCCGATGGTCGAGCCACCGTCTTCCGACCATTCTCTCTCTCCTCGCCACACTCACGA 308
Query 121 GCCTTTCACCTAGCGTGGCTCTCACTCTTCTCATGCTTCTTCTCTACCTTCTCCATCCCT 180
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 309 GCCTTTCACCTAGCTTGGCTCTCACTCTTCTCATGCTTCTTCTCCACCTTCTCCATCCCT 368
Query 181 CCACTCGTCCCCGTCATCTCCTCCGACCTCAACCTCTCTGCCTCCACCGTATCCGCCGCC 240
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CCTCTGGTCCCCGTCATCTCCTCCGACCTCAACCTCTCTGCCTCCACCGTATCCGCCGCC 428
Query 241 GGAATCGCCTCCTTCGCTGGCTCTATCTTCTCTCGCCTCGCTATGGGACCACTCTGTGAT 300
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 429 GGAATCGCTTCCTTCGCTGGCTCCATCTTCTCTCGCCTCGCTATGGGACCACTCTGTGAT 488
Query 301 CTCATCGGACCACGGACTTCCTCAGCGATTCTCTCTTTCCTCACCGCTCCTGTAATCCTC 360
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 489 CTCATCGGACCACGTACTTCCTCAGCGATTCTCTCTTTTCTCACCGCTCCTGTAATCCTC 548
Query 361 TCCGCCTCACTCGTCTCCTCCCCGACGTCCTTCATACTCGTCCGTTTCTTCGTCGGCTTC 420
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 549 TCCGCCTCACTCGTCTCCTCTCCGACGTCCTTCATCCTCGTCCGTTTCTTCGTCGGCTTC 608
Query 421 TCTCTCGCTAATTTCGTAGCTAATCAATACTGGATGTCCTCCATGTTCTCTGGCAACGTC 480
|| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 609 TCGCTCGCTAATTTCGTAGCCAATCAATACTGGATGTCCTCCATGTTCTCCGGTAACGTC 668
Query 481 ATTGGTCTCGCTAACGGTGTCTCAGCCGGTTGGGCTAACGTCGGCGCCGGTATCTCTCAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 ATTGGTCTCGCTAACGGTGTCTCAGCCGGTTGGGCTAACGTCGGCGCCGGTATCTCTCAG 728
Query 541 CTACTTATGCCTCTCATATACGCAACCATCGCCGAATTC-TCCCCACGCTCCATCGCCTG 599
|| |||||||||||||||||| | ||||| ||||||||| | || |||| || |||||||
Sbjct 729 CTCCTTATGCCTCTCATATACTCCACCATAGCCGAATTCCTTCC-ACGCGCCGTCGCCTG 787
Query 600 GCGCGTGTCATTCGTCTTTCCCGCCATTTTTCAGGTTACAACCGCCGTCCTCGTTCTCCT 659
||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 788 GCGCGTGTCCTTCGTATTTCCCGCCATTTTTCAGGTTACAACGGCCGTCCTCGTTCTCCT 847
Query 660 CTACGGCCAAGATACTCCCAACGGTAACAGAAAAAACTCGAACCAGAACAAAATCATAAA 719
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 848 CTACGGCCAAGATACTCCCCACGGTAACAGAAAAAACTCGAACCAGAACAAACTCACAAT 907
Query 720 TCCTGAAGAAGAAGTATTAGTAGTACAAGGAGAAGAAGAACGTTCCAGTTTTGTCGAGAT 779
|||||||||||||| | || ||||| | |||||| |||||||||||||| ||||||||
Sbjct 908 TCCTGAAGAAGAAGAAGTACTAGTAGTTGAAGAAGACGAACGTTCCAGTTTCGTCGAGAT 967
Query 780 CCTTATCGGCGGACTTGGAAATTACAGAGCGTGGATCCTGGCGCTTCTCTACGGATACTC 839
||| ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 968 CCTAATCGGCGGACTTGGAAATTACAGAGCGTGGATCTTAGCGCTGCTCTACGGATACTC 1027
Query 840 GTACGGCGTTGAGCTCACGACGGACAACGTTATCGCCGGATATTTCTACGAGAGATTCGG 899
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1028 GTACGGCGTCGAGCTAACGACGGACAACGTGATCGCCGGATATTTCTACGAGAGATTTGG 1087
Query 900 CGTGAATTTAGAGGCAGCGGGGACGATCGCGGCGAGTTTCGGGATATCGAACATAGCGTC 959
|||||| | ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1088 AGTGAATCTGGAGGCGGCGGGGACGATCGCGGCGAGTTTCGGGATATCGAACATTGCGTC 1147
Query 960 GCGACCGGCGGGAGGGATGATATCGGACGCGCTGGGAAAAAGATTCGGGATGAGAGGGAG 1019
||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||
Sbjct 1148 GCGACCGGCGGGAGGGATGATATCGGATGCGCTGGGGAAGAGATTCGGTATGAGAGGGAG 1207
Query 1020 GCTCTGGGGACTGTGGGTGGTGCAATCGGTGGCTGGGTTGTTGTGCGTGTTACTCGGACG 1079
||| ||||| || ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 GCTGTGGGGGCTATGGATCGTGCAATCGGTGGCTGGGTTGTTGTGCGTGTTACTCGGACG 1267
Query 1080 AGTCAACTCGCTCTGGGGATCAATCGC-CGTCATGTGGGTCTTCTCTGTTTTTGTTCAAG 1138
||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 1268 AGTCAACTCGCTCTGGGGATCAATC-CTCGTCATGTGGGTCTTCTCTGTTTTCGTTCAAG 1326
Query 1139 CTGCTTCTGGCCTCGTATTTGGCGTGGTCCCTTTCGTCTCCACGAGATCTTTAGGAGTCG 1198
||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| |
Sbjct 1327 CTGCTTCTGGCCTTGTATTTGGCGTGGTCCCTTTCGTCTCCACGCGATCGTTAGGAGTGG 1386
Query 1199 TGGCGGGAATTACGGGAAGCGGCGGCACTGTAGGTGCGGTGGTCACGCAGTTTCTGTTGT 1258
||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||
Sbjct 1387 TGGCGGGAATTACGGGAAGCGGCGGTACGGTTGGTGCGGTGGTGACGCAGTTTCTGTTGT 1446
Query 1259 TTTCCGGCGATGGTGTTCGAAAACAGAGAAGCATTTCACTTATGGGTTTGATGACTTTTG 1318
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 TTTCCGGTGATGATGTTCGAAAACAGAGAAGCATTTCACTTATGGGTTTGATGACTTTTG 1506
Query 1319 TGTTTTCTCTGTCTGTTACATCTATTTACTTTCCACAATGGGGTGGAATGTGTTGTGGGC 1378
||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1507 TGTTTGCTCTTTCTGTTACATCAATTTACTTTCCACAATGGGGTGGAATGTGTTGTGGGC 1566
Query 1379 CTTC--C-------GAAGAAGAAGAT-TTATCTCGGCGACTCCTTGTAGAAGACGAAGAG 1428
|||| | |||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 1567 CTTCGTCATCTTCCGAAGAAGAAGATATT-TCTCGGGGACTCCTTGTAGAAGACGAAGAT 1625
Query 1429 GAAGACGATAAAGTGACTAGTGGTAGACTACGTCCCGTTTGTTGA 1473
||||| | ||||||| ||||||||| ||||||||||||||||||
Sbjct 1626 GAAGAAGGTAAAGTGGTTAGTGGTAGTCTACGTCCCGTTTGTTGA 1670
> AT5G14565.1 | Symbols: MIR398C | MIR398C; miRNA | chr5:4694626-4697013
FORWARD LENGTH=1941
Length=1941
Score = 1773 bits (960), Expect = 0.0
Identities = 1110/1184 (94%), Gaps = 4/1184 (0%)
Strand=Plus/Minus
Query 1 ATGGAGCCATCTCAAGGCAACACTAAAACGCCGTCGTTTCCAGATTCCACTATCCCTGTG 60
||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||| ||
Sbjct 1818 ATGGAGCCATCTCAACGCAACACCAAACCGCCGTCGTTTTCAGATTCCACTATCCCGGTT 1759
Query 61 GATTCCGATGGCCGAGCCACCGTCTTCCGACCATTTTCTCTCTCCTCGCCGCACTCACGA 120
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1758 GATTCCGATGGTCGAGCCACCGTCTTCCGACCATTCTCTCTCTCCTCGCCACACTCACGA 1699
Query 121 GCCTTTCACCTAGCGTGGCTCTCACTCTTCTCATGCTTCTTCTCTACCTTCTCCATCCCT 180
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1698 GCCTTTCACCTAGCTTGGCTCTCACTCTTCTCATGCTTCTTCTCCACCTTCTCCATCCCT 1639
Query 181 CCACTCGTCCCCGTCATCTCCTCCGACCTCAACCTCTCTGCCTCCACCGTATCCGCCGCC 240
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 CCTCTGGTCCCCGTCATCTCCTCCGACCTCAACCTCTCTGCCTCCACCGTATCCGCCGCC 1579
Query 241 GGAATCGCCTCCTTCGCTGGCTCTATCTTCTCTCGCCTCGCTATGGGACCACTCTGTGAT 300
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1578 GGAATCGCTTCCTTCGCTGGCTCCATCTTCTCTCGCCTCGCTATGGGACCACTCTGTGAT 1519
Query 301 CTCATCGGACCACGGACTTCCTCAGCGATTCTCTCTTTCCTCACCGCTCCTGTAATCCTC 360
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1518 CTCATCGGACCACGTACTTCCTCAGCGATTCTCTCTTTTCTCACCGCTCCTGTAATCCTC 1459
Query 361 TCCGCCTCACTCGTCTCCTCCCCGACGTCCTTCATACTCGTCCGTTTCTTCGTCGGCTTC 420
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1458 TCCGCCTCACTCGTCTCCTCTCCGACGTCCTTCATCCTCGTCCGTTTCTTCGTCGGCTTC 1399
Query 421 TCTCTCGCTAATTTCGTAGCTAATCAATACTGGATGTCCTCCATGTTCTCTGGCAACGTC 480
|| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1398 TCGCTCGCTAATTTCGTAGCCAATCAATACTGGATGTCCTCCATGTTCTCCGGTAACGTC 1339
Query 481 ATTGGTCTCGCTAACGGTGTCTCAGCCGGTTGGGCTAACGTCGGCGCCGGTATCTCTCAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 ATTGGTCTCGCTAACGGTGTCTCAGCCGGTTGGGCTAACGTCGGCGCCGGTATCTCTCAG 1279
Query 541 CTACTTATGCCTCTCATATACGCAACCATCGCCGAATTC-TCCCCACGCTCCATCGCCTG 599
|| |||||||||||||||||| | ||||| ||||||||| | || |||| || |||||||
Sbjct 1278 CTCCTTATGCCTCTCATATACTCCACCATAGCCGAATTCCTTCC-ACGCGCCGTCGCCTG 1220
Query 600 GCGCGTGTCATTCGTCTTTCCCGCCATTTTTCAGGTTACAACCGCCGTCCTCGTTCTCCT 659
||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1219 GCGCGTGTCCTTCGTATTTCCCGCCATTTTTCAGGTTACAACGGCCGTCCTCGTTCTCCT 1160
Query 660 CTACGGCCAAGATACTCCCAACGGTAACAGAAAAAACTCGAACCAGAACAAAATCATAAA 719
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 1159 CTACGGCCAAGATACTCCCCACGGTAACAGAAAAAACTCGAACCAGAACAAACTCACAAT 1100
Query 720 TCCTGAAGAAGAAGTATTAGTAGTACAAGGAGAAGAAGAACGTTCCAGTTTTGTCGAGAT 779
|||||||||||||| | || ||||| | |||||| |||||||||||||| ||||||||
Sbjct 1099 TCCTGAAGAAGAAGAAGTACTAGTAGTTGAAGAAGACGAACGTTCCAGTTTCGTCGAGAT 1040
Query 780 CCTTATCGGCGGACTTGGAAATTACAGAGCGTGGATCCTGGCGCTTCTCTACGGATACTC 839
||| ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 1039 CCTAATCGGCGGACTTGGAAATTACAGAGCGTGGATCTTAGCGCTGCTCTACGGATACTC 980
Query 840 GTACGGCGTTGAGCTCACGACGGACAACGTTATCGCCGGATATTTCTACGAGAGATTCGG 899
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 979 GTACGGCGTCGAGCTAACGACGGACAACGTGATCGCCGGATATTTCTACGAGAGATTTGG 920
Query 900 CGTGAATTTAGAGGCAGCGGGGACGATCGCGGCGAGTTTCGGGATATCGAACATAGCGTC 959
|||||| | ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 919 AGTGAATCTGGAGGCGGCGGGGACGATCGCGGCGAGTTTCGGGATATCGAACATTGCGTC 860
Query 960 GCGACCGGCGGGAGGGATGATATCGGACGCGCTGGGAAAAAGATTCGGGATGAGAGGGAG 1019
||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||
Sbjct 859 GCGACCGGCGGGAGGGATGATATCGGATGCGCTGGGGAAGAGATTCGGTATGAGAGGGAG 800
Query 1020 GCTCTGGGGACTGTGGGTGGTGCAATCGGTGGCTGGGTTGTTGTGCGTGTTACTCGGACG 1079
||| ||||| || ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 799 GCTGTGGGGGCTATGGATCGTGCAATCGGTGGCTGGGTTGTTGTGCGTGTTACTCGGACG 740
Query 1080 AGTCAACTCGCTCTGGGGATCAATCGC-CGTCATGTGGGTCTTCTCTGTTTTTGTTCAAG 1138
||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 739 AGTCAACTCGCTCTGGGGATCAATC-CTCGTCATGTGGGTCTTCTCTGTTTTCGTTCAAG 681
Query 1139 CTGCTTCTGGCCTCGTATTTGGCGTGGTCCCTTTCGTCTCCACG 1182
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 680 CTGCTTCTGGCCTTGTATTTGGCGTGGTCCCTTTCGTCTCCACG 637
Score = 385 bits (208), Expect = 8e-106
Identities = 272/301 (90%), Gaps = 11/301 (4%)
Strand=Plus/Minus
Query 1183 AGATCTTTAGGAGTCGTGGCGGGAATTACGGGAAGCGGCGGCACTGTAGGTGCGGTGGTC 1242
||||| |||||||| |||||||||||||||||||||||||| || || |||||||||||
Sbjct 558 AGATCGTTAGGAGTGGTGGCGGGAATTACGGGAAGCGGCGGTACGGTTGGTGCGGTGGTG 499
Query 1243 ACGCAGTTTCTGTTGTTTTCCGGCGATGGTGTTCGAAAACAGAGAAGCATTTCACTTATG 1302
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 498 ACGCAGTTTCTGTTGTTTTCCGGTGATGATGTTCGAAAACAGAGAAGCATTTCACTTATG 439
Query 1303 GGTTTGATGACTTTTGTGTTTTCTCTGTCTGTTACATCTATTTACTTTCCACAATGGGGT 1362
||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 438 GGTTTGATGACTTTTGTGTTTGCTCTTTCTGTTACATCAATTTACTTTCCACAATGGGGT 379
Query 1363 GGAATGTGTTGTGGGCCTTC--C-------GAAGAAGAAGAT-TTATCTCGGCGACTCCT 1412
|||||||||||||||||||| | |||||||||||| || |||||| |||||||
Sbjct 378 GGAATGTGTTGTGGGCCTTCGTCATCTTCCGAAGAAGAAGATATT-TCTCGGGGACTCCT 320
Query 1413 TGTAGAAGACGAAGAGGAAGACGATAAAGTGACTAGTGGTAGACTACGTCCCGTTTGTTG 1472
||||||||||||||| ||||| | ||||||| ||||||||| |||||||||||||||||
Sbjct 319 TGTAGAAGACGAAGATGAAGAAGGTAAAGTGGTTAGTGGTAGTCTACGTCCCGTTTGTTG 260
Query 1473 A 1473
|
Sbjct 259 A 259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72640188615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5