BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg351139 Length=3783 Score E Sequences producing significant alignments: (Bits) Value AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 | chr5:6... 5786 0.0 AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 | ... 1995 0.0 > AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 | chr5:6899015-6904167 REVERSE LENGTH=3914 Length=3914 Score = 5786 bits (3133), Expect = 0.0 Identities = 3579/3796 (94%), Gaps = 23/3796 (1%) Strand=Plus/Plus Query 1 ATGAAGAAGAGAGGTTTCTACAATTTGAAGCATCCATTTGATCCATGCCCTTTTGAGTTC 60 |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 129 ATGAAGAAAAGAGGTTTCTACAATTTGAAGCATCCATTTGATCCATGTCCTTTCGAGTTC 188 Query 61 TTCTGCTCGGGTACATGGAAGCCTGTGGAATACATGAGGATCGAAGATGGAATGATGACA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 189 TTCTGCTCGGGTACATGGAAGCCTGTGGAATACATGAGGATCGAAGATGGAATGATGACA 248 Query 121 ATACGTCTGTTACAGAACGGTTATGTGTTGGAGGATATCCGTCCCTTCCAAAGGCTTCGT 180 |||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||| Sbjct 249 ATACGTCTGTTAGAGAATGGTTATGTGTTGGAAGATATCCGTCCTTTCCAAAGGCTTCGT 308 Query 181 CTCAGATCAAGAAAAGCGGCTTTGAGTGACTGTATCTGTTTCCTTCGCCCTGATATCGAT 240 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 309 CTCAGATCAAGAAAAGCGGCTTTGAGCGACTGTATCTGTTTCCTTCGGCCTGATATCGAT 368 Query 241 GTCTGTGTTCTCTATCGTCTCCATGAGGATGACTTGGAACCGGTTTGGGTCGATGCGAGG 300 || ||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| Sbjct 369 GTTTGTGTTCTCTATCGTATCCACGAGGATGACTTGGAACCGGTTTGGGTGGATGCGAGG 428 Query 301 ATTGTTTCTATAGAGAGGAAGCCTCATGATTCTGAATGCTCTTGCAAGATCAGTGTTAGA 360 ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 429 ATTGTTTCTATAGAGAGGAAGCCTCATGAGTCTGAATGCTCTTGCAAGATCAATGTTAGA 488 Query 361 ATTTACATTGACCAAGGCTGCATTGGGTCGGAGAAACAGAGAATCAATAAAGATGCCGTG 420 |||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| Sbjct 489 ATTTACATTGACCAAGGCTGCATTGGCTCGGAGAAACAGAGAATCAATAGAGATTCCGTG 548 Query 421 CTTATCGGTCTAAACCAAATCTCTATTCTCCAGAAGTTCTACAAGGAACAAAGTACTGAT 480 |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct 549 GTTATCGGTCTAAACCAAATCTCCATTCTCCAAAAGTTTTACAAGGAACAAAGTACTGAT 608 Query 481 CAGTTTTACAGGTGGAAATTCTCTGAGGACTGCACTTCCTTGATGAAAACGAGACTGTCG 540 ||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 609 CAGTTCTACAGATGGAGATTCTCTGAGGACTGCACTTCCTTGATGAAAACAAGACTGTCT 668 Query 541 TTGGGAAAGTTCTTGCCGGATCTTTCGTGGTTGACTGTTACTTCAA-TTCTGAAAAGCAT 599 ||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| Sbjct 669 TTGGGAAAGTTCTTGCCGGATCTTTCGTGGTTGACTGTTACCTCAACTT-TGAAAAGCAT 727 Query 600 TGTGTTTCACATAAGAACAGTGCAAACCAAGATGATTTATCAGATTGTAGCAGAT---GA 656 ||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct 728 TGTGTTTCAAATAAGAACAGTGCAAACCAAGATGGTTTATCAGATTGTAACAGATGAAGA 787 Query 657 AGGCTCTAGCTGTACGTTGAGTTCGATGAATATAACTGTGGAAGACGGTGTTTCGTTATC 716 |||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 788 AGGCTCTAGCAGTACGTTGAGTTCGATGAATATTACTTTGGAAGACGGTGTTTCGTTATC 847 Query 717 AAAAGTTGTTCAGTTTAATCCTGCAGATATATTGGATGATTCTCAAGATCCTGAAATAAA 776 |||||| ||| |||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 848 AAAAGTGGTTAAGTTTAATCCGGCAGATATATTGGATGATTCTCAAGATCTTGAAATAAA 907 Query 777 GCAAGAAACCGATTATTTTCAAGAAGCAGATGAGGTAGTGGAACTACGTCGGTCCAAAAG 836 ||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| Sbjct 908 GCAAGAAACCGATTATTATCAAGAAGAAGATGAGGTAGTGGAACTACGTAGGTCCAAAAG 967 Query 837 AAGAAATGTGAGACCGGATAGATTTACCGGATGTGATTATCAGTTAGATACAAATGACGG 896 |||||| ||||||||||||| | ||||||||||||||| || |||||||| |||||| Sbjct 968 AAGAAACGTGAGACCGGATATCTACACCGGATGTGATTATGAGCCAGATACAATTGACGG 1027 Query 897 GTGGGTGCGGATGATGCCGTACCAGATTGGAAAATGGGCTGTTAGTGTGGAGAGTGATGA 956 |||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||| Sbjct 1028 TTGGGTGCGGATGATGCCGTACCAGTTTGGAAAATGTGCTGTTAATGTTGAGAGTGATGA 1087 Query 957 CGACGAGGACGATAGCAATGATGCTGGTGATACTAATGATGATATGTATGTACCATTATC 1016 ||||||||||||| |||||| | ||||||||||||||||||| ||||| |||||||||| Sbjct 1088 AGACGAGGACGATAACAATGAGGATGGTGATACTAATGATGATTTGTATATACCATTATC 1147 Query 1017 GCATTTATTCATCAAGAAAAAGATAACTAATTCTCGAGAAGCGATACCGAAAAGTATG-A 1075 || |||||||||||||||||||| |||||||||||||||||||| |||||||||| | | Sbjct 1148 GCGTTTATTCATCAAGAAAAAGAAAACTAATTCTCGAGAAGCGAAACCGAAAAGT-CGAA 1206 Query 1076 AAGGCGGGATTGTTTTGGTAGACAAGAGGAGAGTACATGGATTTGTTAGAAAAGAGAGGA 1135 |||||| ||| ||| || ||||||||||||||||||||||||||| |||||||||||||| Sbjct 1207 AAGGCGAGATCGTTGTGATAGACAAGAGGAGAGTACATGGATTTGGTAGAAAAGAGAGGA 1266 Query 1136 AATCCGAGCTTTCGGTTATTCCTTTCACTCCAGTATTTGAGCCTATACCGTTGGAACAGT 1195 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 1267 AATCCGAGCTTTCGGTTATTCCTTTCACTCCGGTGTTTGAGCCTATACCGTTGGAACAGT 1326 Query 1196 TTGGTCTTAATGCTAACTGTTTGGGTGGGGGTGGCAGTTTTTCAAGAAGCCAGTACTTTG 1255 ||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||| Sbjct 1327 TTGGTCTTAATGCTAACAGTTTTGGTGGGGGTGGTAGTTTCTCAAGAAGCCAGTACTTTG 1386 Query 1256 ATGAGATTGAAAAGTATCGAAGTAAA-TCCTCGAAATACGGGAAGAAAATGACAGAAATG 1314 |||||| ||||||||||||||||||| | | ||||||||||||||||||||| |||||| Sbjct 1387 ATGAGACTGAAAAGTATCGAAGTAAAGGCAT-GAAATACGGGAAGAAAATGACGGAAATG 1445 Query 1315 GAAGAGATGATGGAATCTGATCTATGTTGGAAAGGTCCTAACTACGTGAAGTCGGTTCAA 1374 ||||||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||| Sbjct 1446 GAAGAGATGATGGAAGCTGATCTATGTTGGAAAGGTCCTAACCAGGTGAAGTCGTTTCAA 1505 Query 1375 AAACGAACACCCCGACCTTCGCGGTCATTTGCTCCAAAAACAGAGGATTCCGATGAACCA 1434 ||||||||| ||||| ||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 1506 AAACGAACATCCCGATCTTCGCGGTCAGTTGCTCCAAAAACAGAGGATTCTGATGAACCA 1565 Query 1435 CGGGTCTATAAGAAAGTAACATTGAGTGCAGGTGCATATAACAAGCTGATAGATTCATAC 1494 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1566 CGGGTCTATAAGAAAGTAACATTGAGTGCAGGTGCATATAACAAGCTGATAGATACATAC 1625 Query 1495 ATGAACAACATTGAGTCCACAATTTCAGCCAAGGACGAGCCTACCAATGTTGTTGACCAG 1554 |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1626 ATGAACAACATTGAGTCCACAATTGCAGCCAAGGACGAGCCTACCAGTGTTGTTGACCAG 1685 Query 1555 TGGGAGGAGTTAAAGAAGACGAATTTCGCATTTAAACTGCATAGGGATATGGAACAA-AA 1613 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || Sbjct 1686 TGGGAGGAGTTAAAGAAGACGAATTTCGCATTTAAACTGCATGGGGATATGGAA-AAGAA 1744 Query 1614 CTTAAGTGAGGATGGTGAGGGAGAGACTTCAGAGAACGAAATGTTATGGAGAGAAATGGA 1673 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1745 CTTGAGTGAGGATGGTGAGGGAGAGACTTCAGAGAACGAAATGTTATGGAGAGAAATGGA 1804 Query 1674 ACTCTGCTTGGCTTCTTCTTACATACTCGATGACAACGAGGCAAGAGTGGACAACGAGGC 1733 ||| |||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| Sbjct 1805 ACTATGCTTGGCTTCTTCTTACATTCTCGATGACAACGAGGTAAGAGTGGATAACGAGGC 1864 Query 1734 TTTAGAAAAGGCGAGAAGTGGTTGTGAACACGATTATAAGCTGGACGAAGAAATCGGGAT 1793 ||| ||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| Sbjct 1865 TTTCGAAAAGGCGAGAAGTGGTTGTGAGCACGATTATAGGCTGGAGGAAGAAATCGGGAT 1924 Query 1794 GTGTTGCAGGTTATGTGGTCATGTAGGAACTGAGATAAAAGATGTATCTGCACCATTTGC 1853 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1925 GTGTTGCAGGTTATGTGGTCATGTAGGAAGTGAGATAAAAGATGTATCTGCACCATTTGC 1984 Query 1854 AGAACATAAGAAATGGACAATGGACACTAAGCAGCTCGAAGAAGATGACATAAAGACTAA 1913 |||||||||||||||||| || || |||||||| ||||||||||||||||||||||||| Sbjct 1985 AGAACATAAGAAATGGACCATAGAGACTAAGCATATCGAAGAAGATGACATAAAGACTAA 2044 Query 1914 GTTGAGCCACAAAGAAGGCGAGACTGAAGATTTCACTATG-TCAAGTGATTCTTCGA-AA 1971 ||||||||||||||||| | ||||| |||||||| ||||| | |||||||||||| | || Sbjct 2045 GTTGAGCCACAAAGAAGCCCAGACTAAAGATTTCTCTATGAT-AAGTGATTCTTC-AGAA 2102 Query 1972 ATGCTTGCCGCTGAAGAAAGTGAAAACGTTTGGGCATTAATACCTCAGCTTAAGAGAAAA 2031 |||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 2103 ATGCTTGCGGCTGAAGAAAGTGACAACGTTTGGGCATTAATACCTAAGCTTAAGAGAAAA 2162 Query 2032 CTACATATGCATCAACGAAGAGCTTTTGAGTTTCTCTGGAGAAATCTAGCAGGATCTGTG 2091 |||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 2163 CTACATGTGCATCAACGAAGAGCTTTCGAGTTTCTCTGGAGAAATGTAGCAGGATCTGTG 2222 Query 2092 GAACCCTCGCTTATGGATCCCACTTCAGATAACATAGGTGGTTGTGTGATCTCTCATTCT 2151 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2223 GAACCCTCGCTTATGGATCCCACTTCAGGTAACATAGGTGGTTGTGTGATCTCTCATTCA 2282 Query 2152 CCAGGAGCTGGTAAAACTTTCCTAATAATCGCTTTCCTCACTAGCTACTTGAAGCTATTT 2211 || |||||||||||||| |||||||| || |||||||||||||||||||||||||||||| Sbjct 2283 CCTGGAGCTGGTAAAACATTCCTAATCATTGCTTTCCTCACTAGCTACTTGAAGCTATTT 2342 Query 2212 CCCGGGAAAAGACCCTTGGTTCTTGCTCCTAAAACAACTTTGTACACATGGTACAAGGAG 2271 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2343 CCCGGGAAAAGACCTTTGGTTCTTGCTCCTAAAACAACTTTGTACACATGGTACAAGGAG 2402 Query 2272 TTCATCAAATGGGAGATCCCAGTTCCGGTTCATTTGATCCACGGTCGAAGAACCTACTGT 2331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2403 TTCATCAAATGGGAGATCCCAGTTCCGGTTCATTTGATCCACGGTCGAAGAACCTATTGT 2462 Query 2332 ACCTTCAAGCAGAACAGCACAATTCAGTTCAATGGAGTTCCGAAACCGAGCCAAGATGTT 2391 |||||||| ||||||| || ||||||||||||||||||| |||||||||| ||||||| Sbjct 2463 ACCTTCAAACAGAACAAAACGGTTCAGTTCAATGGAGTTCCTAAACCGAGCCGAGATGTT 2522 Query 2392 ATGCATGTTCTTGATTGCTTAGAAAAGATACAGAAATGGCACGCGCATCCGAGTGTTCTT 2451 |||||||||||||||||| ||||||| |||||||||||||| || ||||||||||||||| Sbjct 2523 ATGCATGTTCTTGATTGCCTAGAAAAAATACAGAAATGGCATGCTCATCCGAGTGTTCTT 2582 Query 2452 GTAATGGGTTACACCTCGTTT-CTGACTTTGATGAGGGAAGACTCGAAGTTTGCTTATCG 2510 ||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | || Sbjct 2583 GTAATGGGTTACACCTCGTTTAC-GACTTTGATGAGGGAAGACTCGAAGTTTGCTCACCG 2641 Query 2511 -AAAGTACATGGCTAAAGTGCTAAGAGAGAGTCCTGGGCTTCTTGTTCTTGATGAAGGAC 2569 ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 2642 GAAA-TACATGGCTAAAGTGCTAAGAGAGAGTCCCGGGCTTCTTGTTCTTGATGAAGGGC 2700 Query 2570 ATAACCCAAGGAGTACCAAGTCGCGATTACGCAAGGCCTTGATGAAAGTTGGTACTGACT 2629 ||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||| Sbjct 2701 ATAACCCGAGGAGTACCAAGTCAAGACTACGTAAGGCCTTGATGAAAGTTGGTACTGACT 2760 Query 2630 TAAGGATACTTCTTTCGGGTACTTTGTTTCAGAACAACTTCTGCGAGTACTTCAACACGC 2689 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2761 TAAGAATACTTCTTTCGGGTACTTTGTTTCAGAACAACTTTTGCGAGTACTTCAACACGC 2820 Query 2690 TGTGTTTGGCTAGACCAAAGTTTATTCATGAGGTTCTAATGGAGTTAGATCAGAAATTCA 2749 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2821 TATGTTTGGCTAGACCAAAGTTTATTCATGAGGTTCTAATGGAGTTAGATCAGAAATTCA 2880 Query 2750 AGACCAATCAAAGTGTAAATAAGGCGCCTCACTTGCTCGAGAATAGAGCTCGTAAATTCT 2809 |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 2881 AGACCAATCACGGTGTGAATAAGGCGCCTCACTTGCTCGAGAATAGAGCTCGTAAATTAT 2940 Query 2810 TCATCGATATAATTGCCAAGAAGATTGATGCAGGCGTGGGAGATGAACGCCTTCAAGGTC 2869 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2941 TCCTCGATATAATTGCCAAGAAGATTGATGCAAGCGTGGGAGATGAACGCCTTCAAGGTC 3000 Query 2870 TCAATATGTTGAAGAACATGACTAATAGTTTCATTGATAACTATGAAGGGAGTGGAAGTG 2929 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3001 TCAATATGTTGAAGAATATGACTAATGGTTTCATTGATAACTATGAAGGGAGTGGAAGTG 3060 Query 2930 GAAGTGGCGATGCTCTTCCCGGTCTACAAATCTATACACTAGTGATGAACTCGACGGATA 2989 ||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||||| Sbjct 3061 GAAGTGGTGATGCTCTTCCAGGTCTACAGATCTATACATTAGTGATGAACTCGACGGATA 3120 Query 2990 TACAGCATAAGATACTCACAAAACTTCAGGATGTAATAAAGACTTA-TTTCGGGTATCCA 3048 ||||||||||||||||||| ||||||||||||||||||||||| || ||| ||||||||| Sbjct 3121 TACAGCATAAGATACTCACGAAACTTCAGGATGTAATAAAGACGTACTTT-GGGTATCCA 3179 Query 3049 CTCGAGGTCGAGCTTCAGATAACATTGGCAGCTATACATCCTTGGTTGGTCACGAGCTCA 3108 || ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||| Sbjct 3180 CTTGAGGTCGAGCTTCAGATAACATTAGCAGCTATACATCCGTGGTTGGTCACAAGCTCA 3239 Query 3109 AACTGTTGCAAAAAATTCTTCAACCCGCAAGAACTTTTAGAGATCGAAAAACTCAAGCAC 3168 |||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 3240 AACTGTTGCACAAAATTCTTCAACCCGCAAGAACTTTCCGAGATCGGAAAACTCAAGCAC 3299 Query 3169 GATGCAAAGAAAGGATCTAAAGTCATGTTTGTGCTAAACCTTGTCTACCGAGTGGTCAAG 3228 || |||||||||||||||||||||||||||||| |||||||| | | ||||||||||||| Sbjct 3300 GACGCAAAGAAAGGATCTAAAGTCATGTTTGTGTTAAACCTTATTTTCCGAGTGGTCAAG 3359 Query 3229 AGGGAGAAGATCTTGATCTTTTGCCACAACATTGCGCCAATCCGTATGTTTACCGAACTG 3288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3360 AGGGAGAAGATCTTGATCTTTTGCCACAACATTGCGCCAATCCGTATGTTTACCGAACTG 3419 Query 3289 TTTGAGAATGTTTTCAGGTGGCAAAGAGGCAGAGAGATCTTGACCTTAACCGGTGATCTT 3348 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3420 TTTGAGAACATTTTCAGGTGGCAAAGAGGCAGAGAGATCTTGACCTTAACCGGTGATCTT 3479 Query 3349 GAACTGTTCGAGAGAGG-CAGAGTGATAGACAAATTTGAAGAACCTGGAAACCCATCCCG 3407 || ||||| || ||||| | |||||||||||||||| ||||||||||||||||||||||| Sbjct 3480 GAGCTGTTTGAAAGAGGTC-GAGTGATAGACAAATTCGAAGAACCTGGAAACCCATCCCG 3538 Query 3408 AGTCTTACTGGCCTCAATCACAGCTTGCGCAGAAGGGATTAGTCTAACCGCTGCTTCACG 3467 |||| | |||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 3539 AGTCCTCCTGGCCTCGATCACAGCTTGCGCAGAAGGGATTAGTCTGACCGCTGCTTCACG 3598 Query 3468 GGTCATCATGCTCGACTCGGAATGGAACCCTTCAAAGACAAAGCAAGCCATAGCTCGTGC 3527 |||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| Sbjct 3599 GGTCATCATGCTCGACTCAGAATGGAACCCTTCTAAGACAAAGCAAGCTATAGCTCGTGC 3658 Query 3528 ATTCAGACCGGGACAGCAGAAAGTTGTTTATGTTTATCAGCTCTTGTCCAGAGGAACATT 3587 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 3659 ATTCAGACCGGGACAGCAGAAAGTTGTTTACGTTTATCAGCTCTTGTCCAGAGGAACATT 3718 Query 3588 AGAGGAAGATAAGTACAGGAGGACAACATGGAAAGAGTGGGTCTCGAGTATGATATTCAG 3647 ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 3719 AGAGGAAGACAAGTACAGGAGGACAACATGGAAAGAGTGGGTCTCGTGTATGATATTCAG 3778 Query 3648 TGAGGAGTTTGTTGCGGATCCATCTCTATGGCAAGCTGAGAAGATTGAAGACGATGTTCT 3707 ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| Sbjct 3779 TGAGGAGTTTGTTGCGGATCCATCTCTGTGGCAAGCTGAGAAGATTGAAGATGATATTCT 3838 Query 3708 TAGAGAGATCGTTGGAGAAGATAAAGTTAAATCTTTCCATATGATCATGAAGAATGAGAA 3767 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3839 TAGAGAGATCGTTGGAGAAGATAAAGTTAAATCTTTCCATATGATCATGAAGAATGAGAA 3898 Query 3768 GGCTTCAACAGGGTAA 3783 |||||||||||||||| Sbjct 3899 GGCTTCAACAGGGTAA 3914 > AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 | chr3:14755798-14760085 REVERSE LENGTH=3879 Length=3879 Score = 1995 bits (1080), Expect = 0.0 Identities = 2192/2711 (81%), Gaps = 147/2711 (5%) Strand=Plus/Plus Query 1141 GAGCTTTCGGTTATTCCTTTCACTCCAGTATTTGAGCCTATACCGTTGGAACAGTTTGGT 1200 |||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| Sbjct 1129 GAGCTTTCGGTTATTCCTTTCACTCCTGTCTTTGAACCTATACCGTTGGAACAGTTTGGT 1188 Query 1201 CTTAATGCTAACT-GTTTGGGTGGGGGTGGCAGTTTTTCAAGAAGCCAGTACTTTGATGA 1259 || ||||| || | |||| || | ||| | || | || ||| | | | ||||| Sbjct 1189 CTCAATGC-AAATAGTTT--GT-GTGGT-G--GTGTCTCTGGAA---ATTTGATGGATGA 1238 Query 1260 GATTGAAAAGTATCGAAGTAAATCCTCGAAATACGGGAAG-A-AA-ATGACAGAA-A-TG 1314 ||| || |||||||| |||||| | |||||||||||||| | || | || |||| | || Sbjct 1239 GATCGATAAGTATCGTAGTAAAGCAGCGAAATACGGGAAGAAGAAGAAGA-AGAAGATTG 1297 Query 1315 GAA--G-AGATGATGGAATCTGATCTATGTTGGAAAGGTCCTAACTACGTGAA-GTCGGT 1370 || | ||| |||||||||||||||| ||||||| || ||| | | | ||| || ||| Sbjct 1298 AAATGGAAGA-GATGGAATCTGATCTAGGTTGGAATGGACCT-A-T-TGGGAATGT-GGT 1352 Query 1371 TCA-AAAACG-AA--CACCCCGACCT-TCG----CGGT-CATTTGCT-CCAAAAACAGAG 1419 ||| |||| | || ||| | | | ||| ||| | ||| || ||| | || Sbjct 1353 TCATAAAA-GAAATGGACCGC-A-TTCTCGAATAAGGTCCGTTT-CTAGGGAAACCGGA- 1407 Query 1420 GATTCCGATGAACCACGGGTCTATAAGAA-AGTAACATTGAGTGCAGGTGCATATAACAA 1478 | ||| || ||||| | | | |||||||| || ||| ||||| |||||||| |||||||| Sbjct 1408 GTTTCTGAGGAACCGCAGATTTATAAGAAGAG-AACGTTGAGCGCAGGTGCGTATAACAA 1466 Query 1479 GCTGATAGATTCATACATGAACA-ACATTGAGTCCACAATTTCAGCCAAGGAC-GAGCCT 1536 | ||||||| || ||||||| | | ||||| || |||||| ||||||||||| || | Sbjct 1467 GTTGATAGACTCGTACATGAGTAGA-ATTGATTCTACAATTGCAGCCAAGGACAAAG-CA 1524 Query 1537 ACCAATGTTGTTGACCAGTGG-GAGGAGTTAAAGAA-GACG-AA---TTTCGCATTTAAA 1590 |||||||||||||| |||||| ||| ||||||||| || || ||||| || || Sbjct 1525 ACCAATGTTGTTGAGCAGTGGCAAGG-GTTAAAGAACCCCGCAAGCTTTTCG-ATCGAAG 1582 Query 1591 CTGCATAGGGATATGGAACAAAACTTA--AGTGAGGATGG-TGAGGGAGAGACTTCAGAG 1647 | | | | || | || | | | || ||||| || ||| || |||||||||||| Sbjct 1583 CCG-A-A--GA-AAGG---TTGAGTGAGGAG-GAGGA-GGATGATGGCGAGACTTCAGAG 1632 Query 1648 AACGAAATGT-TATGGAGAGAAATGGAACTCTGCTTGGCTTCTTCTTACATACTCGATGA 1706 || || || | ||||||| ||||||||||| |||||||||||||||||||| || ||||| Sbjct 1633 AATGAGAT-TCTATGGAGGGAAATGGAACTATGCTTGGCTTCTTCTTACATTCTTGATGA 1691 Query 1707 CAACGAGGCAAGAGTGGACAACGAGGCTTTAGA-AAAGGCGAGAAGTGGTTGTGAACACG 1765 | | |||| |||||||| |||||||| || | ||| || | ||| ||||||||| | Sbjct 1692 CCATGAGGTGAGAGTGGATAACGAGGCGTTCCATAAA-GCAACCTGTGATTGTGAACATG 1750 Query 1766 ATTAT-AAGCTGGACGAAGAAATCGGGATGTGTTGCAGGTTATGTGGTCATGTAGGAACT 1824 | ||| || || | ||||||||||| ||||||||||| || |||||||||||||||||| Sbjct 1751 ACTATGAA-TTGAATGAAGAAATCGGAATGTGTTGCAGATTGTGTGGTCATGTAGGAACT 1809 Query 1825 GAGATAAAAGATGTATCTGCACCATTTGCAG-AACATAAGAAATGGACAATGGACACTAA 1883 ||||||||| |||| |||||||| ||||| | || ||||||||||| | ||| ||||| Sbjct 1810 GAGATAAAACATGTTTCTGCACCTTTTGC-GCGGCACAAGAAATGGACGACGGAGACTAA 1868 Query 1884 GCAGCTCGAA-GAAGATGACA-TAA-A-GACTA-AGTTGAGCCACA-AAGAAGGCGAGAC 1937 ||| || || |||||||||| ||| | |||| |||| | ||| | | | || |||| Sbjct 1869 GCAAATC-AACGAAGATGACATTAATACTACTATAGTT-AACCA-AGATGGAGTTGAGA- 1924 Query 1938 TG-AAGA-TTTCACTATGTCAAG-TGATTCTTCGA-AAATG-CTTGCCGCTGAAGAAAGT 1992 | | | ||||||||| | || || ||| || | | ||| | | | |||||||||||| Sbjct 1925 -GCCATACTTTCACTAT-ACCAGTTGCTTCCTC-AGATATGCCAT-CGGCTGAAGAAAGT 1980 Query 1993 GAAAACGTTTGGGCATTAATACCTCAGCTTAAGAGAAAACTACATATGCATCA-ACGAAG 2051 || || || ||| | |||||||||||||||||||||||||| ||| |||| || | || Sbjct 1981 GACAATGTCTGGTCTTTAATACCTCAGCTTAAGAGAAAACTGCATTTGCACCAGA-AAAA 2039 Query 2052 AGCTTTTGAGTTTCTCTGG-AGAAATCTAGCAGGATCTGTGGAACCCTCGCTTATGGATC 2110 ||||||||||||||||||| || || ||||| || || |||| ||| || | ||||||| Sbjct 2040 AGCTTTTGAGTTTCTCTGGAAG-AACCTAGCCGGGTCAGTGGTTCCCGCGATGATGGATC 2098 Query 2111 CCACTTCAGATAACATAGGTGGTTGTGTGA-TCTCTCATTCTCCAGGAGCTGGTAAAAC- 2168 | | ||||||||| |||||||| ||||| | | |||||| |||| ||||| || ||||| Sbjct 2099 CGAGTTCAGATAAGATAGGTGGGTGTGT-AGTTTCTCATACTCCCGGAGCAGGAAAAACA 2157 Query 2169 TTTCCTAATAATCGCTTTCCTCACTAGCTACTTGAAGCTATTTCCCGGG-AAAAGACCCT 2227 ||| ||||| || ||||| ||| | |||||||||||| ||||| ||||| |||||||| | Sbjct 2158 TTT-CTAATCATAGCTTTTCTCGCGAGCTACTTGAAGATATTT-CCGGGTAAAAGACCTT 2215 Query 2228 TGGTTCTTGCTCCTAAAACAACTTTGTACACATGGTACAAGGAGTTCATCAAATGGGAGA 2287 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2216 TGGTTCTTGCTCCAAAAACAACTTTGTACACTTGGTACAAGGAGTTCATCAAATGGGAGA 2275 Query 2288 TCCCAGTTCCGGTTCATTTGATCCACGGTCGAAGAACCTACTGTACCTTCAA-GCAGAAC 2346 | || || || ||||| ||| |||| ||||| ||||||||||||| | ||| | |||| Sbjct 2276 TTCCGGTCCCTGTTCACTTGCTCCATGGTCGTAGAACCTACTGTATGTCCAAAG-AGAAG 2334 Query 2347 AGCACAATTCAGTTCAATGGAGTTCCGAAACCGAGCCAAGATGTTATGCATGTTCTTGAT 2406 | | || |||||||| | ||| |||| ||||| |||||||||||||||||||||||||| Sbjct 2335 A-C-CA-TTCAGTTCGAGGGAATTCCAAAACCAAGCCAAGATGTTATGCATGTTCTTGAC 2391 Query 2407 TGCTTAGA-AAAGATACAGAAATGGCACGCGCATCCGAGTGTTCTTGTAATGGGTTACAC 2465 || ||||| ||| || ||||||||||| || || |||||||||||||||||||||||||| Sbjct 2392 TGTTTAGACAAA-ATCCAGAAATGGCATGCACAGCCGAGTGTTCTTGTAATGGGTTACAC 2450 Query 2466 CTCGTTTCTGACTTTGATGAGGGAAGACTCGAAGTTTGCTTATCGAAAGTACATGGCTAA 2525 |||||||| ||||||||||||||||| || ||||||||| || |||||||||||||||| Sbjct 2451 ATCGTTTCTAACTTTGATGAGGGAAGATTCAAAGTTTGCTCATAGAAAGTACATGGCTAA 2510 Query 2526 AGTGCTAAGAGAGAGTCCTGGGCTT-CTTGTTCTTGATGAAGGACATAACCCAAGGAGTA 2584 ||| || |||||| |||||| || || ||||| || || ||||||||||| ||||||| Sbjct 2511 AGTACTGAGAGAGTCTCCTGGA-TTACTGGTTCTAGACGAGGGACATAACCCGAGGAGTA 2569 Query 2585 CCAAGTCGCGATTACGCAAGGCCTTGATGAAAGTTGGTACTGACTTAAGGATACTTCTTT 2644 |||||||| ||||||| ||||||||||||||||||| ||||||||| ||||| || |||| Sbjct 2570 CCAAGTCGAGATTACGAAAGGCCTTGATGAAAGTTGATACTGACTTGAGGATTCTGCTTT 2629 Query 2645 CGGGTACTTTGTTTCAGAACAACTTCTGCGAGTACTTCAACACGCTGTGTTTGGCTAGAC 2704 | ||||| |||||||||||||||||||| |||||||||||||| |||| |||||||||| Sbjct 2630 CTGGTACATTGTTTCAGAACAACTTCTGTGAGTACTTCAACACTTTGTGCTTGGCTAGAC 2689 Query 2705 CAAAGTTTATTCATGAGGTTCTAATGGAGTTAGATCA-GAAATTCAAGACCAATCAAA-- 2761 | |||||| |||||||||||||| ||||||| || || ||| ||| ||||||| ||| Sbjct 2690 CCAAGTTTGTTCATGAGGTTCTAGTGGAGTTGGA-CAAGAAGTTCCAGACCAACCAAGCC 2748 Query 2762 GTGTAAATAAGGCGCCTCACTTGCTCGAGAATAGAGCTCGTAAATTCTTCATCGATATAA 2821 | | ||| | ||||||||||||||| || ||||||||||| || |||||| | || || | Sbjct 2749 GAGCAAA-A-GGCGCCTCACTTGCTTGAAAATAGAGCTCGGAAGTTCTTCCTTGACATTA 2806 Query 2822 TTGCCAAGAAGATTGATGCAGGCGTGGGAGATGAACGCCTT-CAAGGTCTCAATATGTTG 2880 | |||||||||||||| || ||||| ||||| ||| || || |||||||| |||||| Sbjct 2807 TAGCCAAGAAGATTGACACAAAAGTGGGCGATGAGCGC-TTGCAGGGTCTCAACATGTTG 2865 Query 2881 AAGAACATGACTAATAGTTTCATTGATAACTATGAAGGGAGTGGAAGTGGAAGTGGCGAT 2940 | ||| ||||| | | ||||||| ||||||||||||||||||||||| |||||||| ||| Sbjct 2866 AGGAATATGACGAGTGGTTTCATCGATAACTATGAAGGGAGTGGAAGCGGAAGTGGTGAT 2925 Query 2941 GCTCTTCCC-GGTCTACAAATCTATACACTAGT-GATGAACTCGACGGATATACAGCATA 2998 | ||| ||| ||| | || || || ||| | || |||||| || || ||| ||||||| | Sbjct 2926 GTTCT-CCCAGGTTTGCAGATTTACACATT-GTTGATGAATTCCACTGATGTACAGCACA 2983 Query 2999 AGA-TACTCACAAAACTTCAGGATGTAATAA-AGACTTATT-TCGGGTATCCACTCGAGG 3055 ||| | || || ||||||||| | |||| | ||||| | || |||||||||||| Sbjct 2984 AGAGT-CTTACCAAACTTCAGAACATAATGTCA-ACTTACCAT-GGATATCCACTCGAGC 3040 Query 3056 TCGAGCTT-CAGATAACATTGGCAGCTATACATCCTTGGTTGGTCACGAGCTCAAACTGT 3114 ||||| || | ||||| || || ||||| |||||||||||||||| | | ||| |||| Sbjct 3041 TCGAG-TTACTCATAACGTTAGCTGCTATCCATCCTTGGTTGGTCAAAACCACAACCTGT 3099 Query 3115 TGCAAAAAATTCTTCAACCCGCAAGAACTTTTAGAGATCGAAAAACTCAAGCACGATGCA 3174 ||| |||||||||||||| || || ||||||||||| || || ||||||||||||||| Sbjct 3100 TGCGCCAAATTCTTCAACCCTCAGGAGCTTTTAGAGATTGAGAAGCTCAAGCACGATGCA 3159 Query 3175 AAGAAAGGATCTAAAGTCATGTTTGTGCTAAACCTTGTCTACCGAGTGGTCAAGAGGGAG 3234 ||||||||||| ||||||||||||||||| || ||||| | ||| ||||||||||||||| Sbjct 3160 AAGAAAGGATCAAAAGTCATGTTTGTGCTTAATCTTGTGTTCCGGGTGGTCAAGAGGGAG 3219 Query 3235 AAGATCTTGATCTTTTGCCACAACATTGCGCCAATCCGTATGTTTACC-GAACTGTTTGA 3293 || ||| | || ||||| |||||||||||||| ||||| ||||| | || ||||| || Sbjct 3220 AAAATCCTCATATTTTGTCACAACATTGCGCCGATCCGCCTGTTT-CTTGAGCTGTTCGA 3278 Query 3294 GAATGTTTTCAGGTGGCAA-AGAGGCAGAGAGATCTTGACCTTAACCGGTGATCTTGAAC 3352 |||||| ||||||||| || |||||| ||||| || ||||||| || || ||||| || | Sbjct 3279 GAATGTATTCAGGTGG-AAGAGAGGCCGAGAGCTCCTGACCTTGACAGGGGATCTCGAGC 3337 Query 3353 TGTTCGAGAGAGGCAGAGTGATAGACAAATTTGAAGAACCTGGAAACCCA-TCCCGAGT- 3410 |||| || ||||||||||| ||||||||||||||||| || ||| || | ||||| || Sbjct 3338 TGTTTGAAAGAGGCAGAGTAATAGACAAATTTGAAGAGCCAGGAGGCC-AGTCCCGTGTT 3396 Query 3411 CTTACTGGCCTCAATCACAGCTTGCGCAGAAGGGATTAGTCTAACCGCTGCTTCACGGGT 3470 || ||||| || || ||||| || |||||||| || ||||||||||||||||||||||| Sbjct 3397 CTG-CTGGCTTCGATTACAGCCTGTGCAGAAGGCATCAGTCTAACCGCTGCTTCACGGGT 3455 Query 3471 CATCATGCTCGACTCGGAATGGAACCCTTCAAAGACAAAGCAAGCCATAGCTCGTGCATT 3530 |||||||| || || || ||||| ||||| |||||||||||||| || || |||||||| Sbjct 3456 GATCATGCTTGATTCAGAGTGGAATCCTTCTAAGACAAAGCAAGCAATCGCACGTGCATT 3515 Query 3531 CAGACCGGGACAGCAGAAAGTTGTTTATGTTTATCAGCTCTTGTCCAGAGGAACA-TTAG 3589 ||||||||||||||||||||| || || ||||| ||||||||||| ||||||||| || | Sbjct 3516 CAGACCGGGACAGCAGAAAGTGGTGTACGTTTACCAGCTCTTGTCGAGAGGAACACTT-G 3574 Query 3590 AGGAAGATAAGTACAGGAGGACAACATGGAAAGAGTGGGTCTCGAGTATGATATTCAGTG 3649 | ||||| || ||||||||||| || |||||||| |||||||| |||||||| ||||||| Sbjct 3575 AAGAAGACAAATACAGGAGGACGACCTGGAAAGAATGGGTCTCCAGTATGATTTTCAGTG 3634 Query 3650 AGGAGTTTGTTGCGGATCCATCTCTATGGCAAGCTGAGAAGATTGAAGACGATGTTCTTA 3709 | || ||||| | ||| ||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3635 AAGAATTTGTGGAGGACCCATCTCAATGGCAAGCTGAGAAGATTGAGGACGATGTTCTTA 3694 Query 3710 GAGAGATCGTTGGAG-AAGATAAAGTTAAATCTTTCCATATGATCATGAAGAATGAGAAG 3768 |||| ||||| |||| |||| ||||| ||||| |||||||||||||||||||| ||||| Sbjct 3695 GAGAAATCGT-GGAGGAAGACAAAGTCAAATCCTTCCATATGATCATGAAGAACGAGAAA 3753 Query 3769 GCTTCAACAGG 3779 ||||||||||| Sbjct 3754 GCTTCAACAGG 3764 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 188427037908 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5