BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg351421

Length=1035
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G43580.1 | Symbols:  | Beta-galactosidase related protein | ...   134    2e-30
  AT3G21960.2 | Symbols:  | Receptor-like protein kinase-related ...  67.6    2e-10


> AT3G43580.1 | Symbols:  | Beta-galactosidase related protein 
| chr3:15502143-15503606 FORWARD LENGTH=1464
Length=1464

 Score =  134 bits (72),  Expect = 2e-30
 Identities = 96/108 (89%), Gaps = 0/108 (0%)
 Strand=Plus/Plus

Query  63   TTCGTCCATGGCAAGAGCTCCACCTCCCCATGCGCATCATTTGGATCCTCCATGGCTTAG  122
            ||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct  308  TTCGTGCATGACAAGAGCTCCACCTCCCCATGCGCATCATTTGGATCCCCCATGGCTCAG  367

Query  123  TTCCGAGCTATCGGTTTGCTTCTGGTGGCTGGAGGCCCTTGGACCGTC  170
            | || |||||| |||||| ||||||||||||||   ||||| ||||||
Sbjct  368  TCCCAAGCTATTGGTTTGTTTCTGGTGGCTGGAAATCCTTGAACCGTC  415


> AT3G21960.2 | Symbols:  | Receptor-like protein kinase-related 
family protein | chr3:7737156-7739542 FORWARD LENGTH=1326
Length=1326

 Score = 67.6 bits (36),  Expect = 2e-10
 Identities = 64/77 (83%), Gaps = 3/77 (4%)
 Strand=Plus/Plus

Query  751  TTAATCAACAGTAAGGTTATTATTCATGAAATTGA-AAGCTTGAGGAAGAACGGCATTAT  809
            |||| ||||  || || ||||||||| ||||   | ||| ||||||||||||||||||||
Sbjct  824  TTAA-CAACTTTATGGGTATTATTCAAGAAA-CAAGAAGTTTGAGGAAGAACGGCATTAT  881

Query  810  GATCCCGTATCCAAGGA  826
            ||||||||  |||||||
Sbjct  882  GATCCCGTCCCCAAGGA  898



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 50736488470


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5