BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg352729
Length=2610
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01040.1 | Symbols: | Glycosyl hydrolase superfamily protei... 1794 0.0
AT4G01050.1 | Symbols: TROL | thylakoid rhodanese-like | chr4:4... 1020 0.0
> AT4G01040.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr4:453369-455548 FORWARD LENGTH=1448
Length=1448
Score = 1794 bits (971), Expect = 0.0
Identities = 1178/1273 (93%), Gaps = 33/1273 (3%)
Strand=Plus/Plus
Query 1 ATGGCGAGGAGACGACATTCATCGGCGGCGGAGAGTTTGAAACGGCGGAAGGACGGAGAC 60
||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 15 ATGGCGAGGAGGCGACGTTCATCGGCGGCGGAGAGTTTGAAACGGCGGAACGACGGATAC 74
Query 61 GAGTCACTGTCTCAAGTCGGGGAACCGGACTCAGATCGGAGACTCATCACCATTTTCGTG 120
|||||||||| |||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 75 GAGTCACTGTGTCAAGTCGTACAACAAGATTCAGATCGGAGACTCATCACCATTTTCGTA 134
Query 121 ATCTTCTTCATCT-TGATTCCCGCCGTTTCGATTGTC-GTGTACAAAGTCAAATTCGCTG 178
||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 135 ATCTTCTTCAT-TGTGATTCCCGCCGTTTCGATTG-CTGTGTACAAAGTCAAATTCGCTG 192
Query 179 ATCGAGTCATCCAAACGGAACCATCAATACGTCACAAGGGAATCGTTAAAACTGATATTA 238
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 193 ATCGAGTCATCCAAACGGAATCATCAATACGTCAAAAGGGAATCGTTAAAACTGATATTA 252
Query 239 ATTTCCAAGAAATCCTCACTGAACATTCTAAGGCCGCAGAGAA-TCAAC-A---ACTA-G 292
|||||||||||||||||||||||||||| ||||| ||||||| ||||| | |||| |
Sbjct 253 ATTTCCAAGAAATCCTCACTGAACATTCCAAGGCTTCAGAGAATTCAACTAGGCACTATG 312
Query 293 -----GCA---CTA---T-GATTA-TCCA--GAACTCTAAAGGTTATGATATGGCAAAGA 337
|| || | |||| |||| |||||||||||| ||||||||||||||||
Sbjct 313 ATTATCCAGTGTTAGCTTACATTACTCCATGGAACTCTAAAGGCTATGATATGGCAAAGA 372
Query 338 TATTTAACTCAAAGTTTACACATTTATCACCGGTATGGTACGATCTGAAGAGTAGTGGCC 397
|||| ||||||||||||||||||||||| |||||||||||||| ||| | || | |||
Sbjct 373 TATTCAACTCAAAGTTTACACATTTATCGCCGGTATGGTACGACCTG-A-AG-A---GCC 426
Query 398 AAGGATCTGGGTTGGTTTTGGAAGGGAGACATAATGCTGATAAGGGATGGATCCAAGAGC 457
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 427 AAGGGTCTGGATTGGTTTTGGAAGGGAGACATAATGCTGATAAGGGATGGATTCAAGAGC 486
Query 458 TTCGGTCAAGAGG-AAGTGCGCTGATATTACCAAGAGTTGTTCTAGAAGCAATTCCTGGG 516
||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 487 TTCGGTCAAGAGGCAA-TGCACTGATATTACCAAGAGTTGTTCTAGAAGCAATTCCTGGG 545
Query 517 GAGATGCTTAAGAAAAAGAAACTAAGGGAGAAAGCTATCAATCTTATTGTCACAGAGTGC 576
||||||||||| ||||| |||||||| ||||||||||||| |||||||||||||||||||
Sbjct 546 GAGATGCTTAACAAAAAAAAACTAAGAGAGAAAGCTATCAGTCTTATTGTCACAGAGTGC 605
Query 577 AAGGAAATGGAATATGATGGTATCGTGTTAGAGTCTTGGTCAAGGTGGGCAGCTTATGGC 636
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 AAGGAAATGGAATACAATGGTATCGTGTTAGAGTCTTGGTCAAGGTGGGCAGCTTATGGC 665
Query 637 GTTTTGCATGACCCAGATATGCGGAAAATGGCACTGCAATTCGTAAAACAACTTGGAGAC 696
|||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 666 GTTTTGCATGACCCTGATTTGCGGAAAATGGCACTGAAATTCGTAAAACAACTTGGAGAC 725
Query 697 GCCCTTCACTCAACAAGCTCACTGAGAAATAACCAGCAACATATGCAGTTCATGTATGTC 756
|| ||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 726 GCTCTTCACTCAACGAGCTCACCAAGAAACAACCAGCAACATATGCAGTTCATGTATGTC 785
Query 757 GTTGGTCCACCTCGTTCAGAGAAGCTCCAAATGTACGATTTTGGGCCCGAAGATCTTCAA 816
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 786 GTTGGTCCGCCTCGTTCAGAGAAGCTCCAAATGTACGATTTTGGGCCAGAAGATCTTCAA 845
Query 817 TTCTTGAAAGATTCGGTTGATGGGTTCTCTCTTATGACCTATGATTTCTCCAATCCCCAG 876
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 846 TTCTTGAAAGATTCGGTTGATGGGTTCTCTCTTATGACCTATGATTTCTCAAATCCCCAG 905
Query 877 AACCCTGGCCCCAATGCACCTGTCAAGTGGATAGATTTGACCCTCAAGCTCCTGCTTGGT 936
||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 906 AACCCTGGCCCCAATGCTCCTGTCAAGTGGATAGATTTAACTCTCAAGCTCCTGCTTGGG 965
Query 937 TCATCCAATACCATAGACTCAAACATAGCCAGAAAAGTTCTTCTTGGTATCAACTTTTAC 996
|||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 966 TCATCCAACAACATAGACTCAAACATAGCCAGGAAGGTTCTTCTTGGTATCAACTTTTAC 1025
Query 997 GGAAACGATTTTGTAATCTCTGGAGATTCAGGAGGCGGAGGAGCAATCACCGGAAGGGAT 1056
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1026 GGCAACGATTTTGTAATCTCTGGAGATTCAGGAGGTGGAGGAGCAATCACCGGAAGGGAT 1085
Query 1057 TACCTCGCATTACTCCAGAAACACAAACCAAATTTTCGTTGGGATAAAGAGAGCGGGGAG 1116
|||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||
Sbjct 1086 TACCTCGCATTACTCCAGAAACACAAGCCAACTTTCCGTTGGGATAAAGAGAGCGGCGAA 1145
Query 1117 CATCTTTTCATGTATAGAGATGACAAGAACATCAAGCATGCTGTTTTCTATCCTACATTG 1176
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1146 CATCTTTTCATGTATAGAGATGATAAGAACATCAAGCATGCTGTTTTCTATCCTACATTG 1205
Query 1177 ATGTCAATCCTTCTACGGCTTGAGAATGCTCGTCTCTGGGGTATCGGCATTTCAATCTGG 1236
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1206 ATGTCAATCCTTCTACGGCTTGAGAATGCTCGTCTCTGGGGAATCGGCATTTCAATCTGG 1265
Query 1237 GAAATCGGACAAG 1249
|||||||||||||
Sbjct 1266 GAAATCGGACAAG 1278
> AT4G01050.1 | Symbols: TROL | thylakoid rhodanese-like | chr4:455768-458510
FORWARD LENGTH=1842
Length=1842
Score = 1020 bits (552), Expect = 0.0
Identities = 580/594 (98%), Gaps = 0/594 (0%)
Strand=Plus/Plus
Query 1374 CCCTATGTCGGTGTTATCCGAGAAAAGATCAGAACCACGAAAGCCTTTCTCGCTCCCTAA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 CCCTATGTCGGTGTTATCCGAGAAAAGATCAGAACCACGAAAGCCTTTCTCGCTCCCTAA 195
Query 1434 CCTCTTTCCACCAAAATCACCGAGACCAATCTCCCAAGAAAGCTTCTTGAAGAGATTCAA 1493
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 196 CCTCTTTCCACCAAAATCACAGAGACCAATCTCCCAAGAAAGCTTCTTGAAGAGATTCAA 255
Query 1494 TGGTGGATTGGCTCTTCTAACCTCTGTTCTAAGCAGTGCAACAGCTCCTGCTAAATCCCT 1553
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 256 TGGTGGATTGGCTCTTCTAACTTCTGTTCTAAGCAGTGCAACAGCTCCTGCTAAATCCCT 315
Query 1554 GACGTACGAGGAAGCTCTGCAACAATCTATGACCACTTCTTCATCTTTTGATTCGGATGG 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GACGTACGAGGAAGCTCTGCAACAATCTATGACCACTTCTTCATCTTTTGATTCGGATGG 375
Query 1614 TTTGATTGAAGGGATATCCAATTTTGTCACGGACAATCCATTGGTTATTGCCGGTGGAGT 1673
| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 376 TCTGATTGAAGGGATATCCAATTTTGTCACAGACAATCCTTTGGTTATTGCCGGTGGAGT 435
Query 1674 TGCTGCATTGGCTGTTCCATTTGTTTTGTCTCAGGTTCTGAACAAAAAGCCCAAATCTTG 1733
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||
Sbjct 436 TGCTGCATTGGCTGTTCCATTTGTTCTGTCTCAGGTTCTGAACAAGAAGCCCAAATCATG 495
Query 1734 GGGAGTTGAATCTGCTAAGAATGCTTATACCAAGTTGGGTACTGATGATAATGCTCAGTT 1793
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 GGGAGTTGAGTCTGCTAAGAATGCTTATACCAAGTTGGGTACTGATGATAATGCTCAGTT 555
Query 1794 ACTTGACATAAGAGCTTCTGCTGATTTCAGACAAGTGGGCAGTCCTAATATTAAGGGTTT 1853
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 GCTTGACATAAGAGCTACTGCTGATTTCAGACAAGTGGGCAGTCCTAATATTAAGGGTTT 615
Query 1854 GGGTAAAAAAGCGGTTTCTACTGTTTATAACGGTGAAGACAAGCCTGGTTTCCTGAAGAA 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 GGGTAAAAAAGCGGTTTCTACTGTTTATAACGGTGAAGACAAGCCTGGTTTCCTGAAGAA 675
Query 1914 GCTTTCCTTGAAGTTTAAAGATCCTGAGAACACCACATTGTTCATTCTGGACAA 1967
|||||| |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 676 GCTTTCTTTGAAGTTTAAAGATCCTGAGAACACCACATTATACATTCTGGACAA 729
Score = 440 bits (238), Expect = 3e-122
Identities = 267/281 (95%), Gaps = 1/281 (0%)
Strand=Plus/Plus
Query 2007 GTTTGATGGAAACTCCGAGCTTGTAGCTGAATTGGTGGCTCTTAATGGATTCAAATCTGC 2066
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 730 GTTTGATGGAAACTCTGAGCTTGTTGCTGAATTGGTGGCTCTTAATGGATTCAAATCTGC 789
Query 2067 TTACGCGATTAAAGATGGTGCAGAGGGACCTAGAGGCTGGTTGAATAGCGGCTTGCCTTG 2126
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 790 TTATGCGATTAAAGATGGTGCAGAGGGACCTAGAGGCTGGTTGAATAGCAGCTTGCCTTG 849
Query 2127 GGTAGAGCCAAAGAAGACTCTCAGTCTTGATTTGAGCAGTTTGACGGATAGCATCAGCGG 2186
| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 850 GATAGAGCCAAAGAAGACTCTCAGCCTTGATTTAAGCAGTTTGACGGATAGCATCAGCGG 909
Query 2187 TGTATTTGGTGAGAGTTCTGATGGTGTGTCTGTCGCTCTTGGAGTAGCCGCTGCTGCTGG 2246
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 910 TGTATTTGGTGAGAGTTCTGATGGTGTATCTGTCGCTCTTGGAGTAGCTGCTGCTGCTGG 969
Query 2247 ATTAAGTGTTTTTGCATTTACAGAGGACCGAAAGCAAACTC 2287
||||||||||||||||||||||||| | |||| || ||||
Sbjct 970 ATTAAGTGTTTTTGCATTTACAGAG-ATTGAAACCATACTC 1009
Score = 387 bits (209), Expect = 4e-106
Identities = 256/278 (92%), Gaps = 6/278 (2%)
Strand=Plus/Plus
Query 2262 ATTTACAGAGGACCGAAAGCAAACTCTAAAACAGGTGGATGAGTTCTTGAACACAAAGAT 2321
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1060 ATTTGCTGAGGACCGAAAGCAAACTCTAAAACAGGTGGATGAGTTCTTGAACACAAAGGT 1119
Query 2322 TGCTCCTAAAGAACTTGTTGACGAGTTAAAGGAAATAGGAAAGGCTCTTCTTCCTCAGTC 2381
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1120 TGCCCCTAAAGAACTTGTTGATGAGTTAAAGGAAATAGGAAAGGCTCTTCTTCCTCAATC 1179
Query 2382 AACAAGCAACAAAGCTCTTCCTGCACCAGCAACAGTAGCAGCAGAAGCAG---C--C-AC 2435
|||||||||||||||||| || ||||||||||||||| |||||||||||| | | ||
Sbjct 1180 AACAAGCAACAAAGCTCTCCCAGCACCAGCAACAGTAACAGCAGAAGCAGAATCAGCTAC 1239
Query 2436 AGCTACAACCACCACTGTCGATAAACCAGTACCTGAGCCAGAAGCAGGAGCAGCTACAAC 2495
||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1240 AGCTACAACCACCACAGTCGATAAACCAGTACCTGAGCCAGAAACAGTTGCAGCTACAAC 1299
Query 2496 CACCACCGTAGATAAACCAGTACCAGAGCCAGAGCCAG 2533
||||| ||||||||||||||||| |||||||||||||
Sbjct 1300 AACCACTGTAGATAAACCAGTACCTGAGCCAGAGCCAG 1337
Score = 89.8 bits (48), Expect = 1e-16
Identities = 48/48 (100%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 2563 TACCCTGACTTGAAGCCTCCATCTTCTCCGATGCCATCGCAGCCCTGA 2610
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 TACCCTGACTTGAAGCCTCCATCTTCTCCGATGCCATCGCAGCCCTGA 1507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129581213769
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5