BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353102
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37360.1 | Symbols: CYP81D2 | cytochrome P450, family 81, su... 558 2e-158
AT4G37340.1 | Symbols: CYP81D3 | cytochrome P450, family 81, su... 414 4e-115
AT1G66540.1 | Symbols: | Cytochrome P450 superfamily protein |... 385 3e-106
> AT4G37360.1 | Symbols: CYP81D2 | cytochrome P450, family 81,
subfamily D, polypeptide 2 | chr4:17567124-17568858 REVERSE
LENGTH=1500
Length=1500
Score = 558 bits (302), Expect = 2e-158
Identities = 366/398 (92%), Gaps = 0/398 (0%)
Strand=Plus/Plus
Query 202 GCCCCCATGCTGCTTCCTCACGTCGCCTCGAAAGATTGTAAAGTTGCGGGATACGATATG 261
||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1093 GCCCCTATGCTGCTTCCTCACGTAGCCTCGAAAGATTGTAAAGTTGGGGGATACGATATG 1152
Query 262 CCACATGGCACGATGCTATTGACTAATGCATGGGCTATACATAGGGATCCTCGGCTATTG 321
|| | ||| |||||||||||||||||||||||||||||||| |||||||| | ||||| |
Sbjct 1153 CCGCGTGGGACGATGCTATTGACTAATGCATGGGCTATACACAGGGATCCCCTGCTATGG 1212
Query 322 GATGATCCAACTAGCCTCAATCCAGAGAGGTTCGAGAAAGGAGGAGAGGCTCATAAGCTT 381
||||||||||| ||| |||| ||||||||||||||||||| |||||||||| | |||||
Sbjct 1213 GATGATCCAACGAGCTTCAAGCCAGAGAGGTTCGAGAAAGAAGGAGAGGCTAAGAAGCTA 1272
Query 382 ATGCCGTTCGGGCTAGGTAGACGGGCATGTCCTGGGTCCGGTTTGGCTCAGCGGCTAGTG 441
||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1273 ATGCCGTTCGGGCTAGGAAGAAGGGCATGTCCTGGATCCGGTTTGGCTCAGCGGCTAGTG 1332
Query 442 ACCTTGAGTCTCGGGTCTTTGATTCAATGTTTTGAGTGGGAGAGGATTGGAGAAGAAGAG 501
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1333 ACCTTGAGTCTCGGGTCTTTGATTCAATGTTTTGAATGGGAGAGGATTGGAGAAGAAGAG 1392
Query 502 GTTGATATGACTGAAGGTGGAGGACTCACTATGCCTAAAGGTATACCGTTGGTAGCCATG 561
|| ||||||||||||||| ||||||||| ||||| |||| || |||||||| ||| |||
Sbjct 1393 GTCGATATGACTGAAGGTCCAGGACTCACAATGCCGAAAGCTAGACCGTTGGAAGCTATG 1452
Query 562 TGCAGAGCACGTGCCTTCGTTGGTAAAATCTTACCCGA 599
||||||||||||| ||| ||||||||||||||||||||
Sbjct 1453 TGCAGAGCACGTGACTTTGTTGGTAAAATCTTACCCGA 1490
Score = 134 bits (72), Expect = 1e-30
Identities = 88/96 (92%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 107 ATACATCAGCGGTAACATTGGAATGGGCATTGTCAAGCTTGTTGAACAATCCAGAGGTAC 166
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 908 ATACAACAGCGGTAACATTGGAATGGGCATTGTCAAGCTTGTTGAACAATCCTGAGGTGC 967
Query 167 TGAAAAAGGCGAGAGATGAGATCGATAGAAAGATCG 202
|||| ||||| ||||| |||||||| |||| |||||
Sbjct 968 TGAACAAGGCCAGAGACGAGATCGACAGAATGATCG 1003
> AT4G37340.1 | Symbols: CYP81D3 | cytochrome P450, family 81,
subfamily D, polypeptide 3 | chr4:17564850-17566787 REVERSE
LENGTH=1687
Length=1687
Score = 414 bits (224), Expect = 4e-115
Identities = 351/411 (85%), Gaps = 13/411 (3%)
Strand=Plus/Plus
Query 205 CCCATGCTGCTTCCTCACGTCGCCTCGA-AAGATTGTAAAGTTGCGGGATACGATATGCC 263
||| || || |||||||||| || || | |||| |||||||| | ||| ||| |||||||
Sbjct 1177 CCCTTGTTGGTTCCTCACGTAGCATC-AGAAGACTGTAAAGTAGGGGGTTACCATATGCC 1235
Query 264 ACATGGCACGATGCTATTGACTAATGCATGGGCTATACATAGGGATCCTCGGCTATTGGA 323
|| ||| |||||||||||||||||||||||||| ||||||||||||||| | ||| |||
Sbjct 1236 ACGTGGAACGATGCTATTGACTAATGCATGGGCAATACATAGGGATCCTAAGATATGGGA 1295
Query 324 TGATCCAACTAGCCTCAATCCAGAGAGGTTCGAGAAAGGAGGAGAGGCTCATAAGCTTA- 382
||||||||| ||| |||| ||||||||||||||||||| ||| |||||||| |||| ||
Sbjct 1296 TGATCCAACGAGCTTCAAACCAGAGAGGTTCGAGAAAGAAGGGGAGGCTCAGAAGC-TAT 1354
Query 383 TGCCGTTCGGGCTAGGTAGACGGGCATGTCCTGGGTCCGGTTTGGCTCAGCGGCTAGTGA 442
|| ||| |||||||| ||| |||| ||||||||||||||| ||||||| ||||||| ||
Sbjct 1355 TGGGGTTTGGGCTAGGAAGAAGGGCGTGTCCTGGGTCCGGTCTGGCTCAACGGCTAGCGA 1414
Query 443 CCTTGAGTCTCGGGTCTTTGATTCAATGTTTTGAGTGGGAGAGGATTGGAGAAGAAGAGG 502
||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1415 GCTTGACTATCGGGTCTTTGATTCAATGTTTTGAGTGGGAGAGGATAGGAGAAGAAGAGG 1474
Query 503 TTGATATGACTGAAGGTGGAGGAC---TCACTA-TGCCTAAAGGTATACCGTTGGTAGCC 558
| ||||||||||||||||||||| ||| || |||| |||| ||||||||||||||||
Sbjct 1475 TGGATATGACTGAAGGTGGAGGAGGAGTCA-TAATGCCCAAAGCTATACCGTTGGTAGCC 1533
Query 559 ATGTGCAGAGCACGTGCC-TTCGTTGGTAAAATCTT-ACCCGAGTCTGCTT 607
||||||| |||||| || || |||||||| ||| | | | ||||| ||||
Sbjct 1534 ATGTGCAAAGCACGCCCCGTT-GTTGGTAAGATCCTCAAC-GAGTCCGCTT 1582
> AT1G66540.1 | Symbols: | Cytochrome P450 superfamily protein
| chr1:24824459-24826586 FORWARD LENGTH=1623
Length=1623
Score = 385 bits (208), Expect = 3e-106
Identities = 312/362 (86%), Gaps = 8/362 (2%)
Strand=Plus/Plus
Query 233 AAGATTGTAAAGTTGCGGGATACGATATGCCACATGGCACGATGCTATTGACT-AATG-C 290
||||||||||||| | ||| ||||||||||| |||||||||| ||||| | || | |
Sbjct 1163 AAGATTGTAAAGTAGGGGGTTACGATATGCCGTGTGGCACGATGTTATTG-GTGAACGTC 1221
Query 291 ATGGGCTATACATAGGGATCCTCGGCTATTGGATGATCCAACTAGCCTCAATCCAGAGAG 350
|||||||||||||| |||||| |||||| ||||||||| | || |||| ||||||||
Sbjct 1222 -TGGGCTATACATAGAGATCCTAGGCTATGGGATGATCCCGCGAGTTTCAAGCCAGAGAG 1280
Query 351 GTTCGAGAAAGGAGGAGAGGCTCATAAGCTTA-TGCCGTTCGGGCTAGGTAGACGGGCAT 409
||| ||||||| ||||||| | |||||| ||| || |||||||| |||| ||| | || |
Sbjct 1281 GTTTGAGAAAGAAGGAGAGACGCATAAG-TTATTGACGTTCGGGTTAGGAAGAAGAGCGT 1339
Query 410 GTCCTGGGTCCGGTTTGGCTCAG-CGGCTAGTGACCTTGAGTCTCGGGTCTTTGATTCAA 468
||||||| ||||| |||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 1340 GTCCTGGTTCCGGACTGGCTC-GACGGCTAGTGAGCTTGAGTCTCGGGTCTTTGATTCAA 1398
Query 469 TGTTTTGAGTGGGAGAGGATTGGAGAAGAAGAGGTTGATATGACTGAAGGTGGAGGACTC 528
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1399 TGTTTTGAATGGGAGAGGATTGGAGAAGAGGAGGTGGATATGACTGAAGGTGGTGGACTC 1458
Query 529 ACTATGCCTAAAGGTATACCGTTGGTAGCCATGTGCAGAGCACGTGCCTTCGTTGGTAAA 588
|| ||||||| || ||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1459 ACAATGCCTAGAGCTATTCCGTTGGTAGCCATGTGCAGAGCACGTGCCTTTGTTGGAAAA 1518
Query 589 AT 590
||
Sbjct 1519 AT 1520
Score = 113 bits (61), Expect = 2e-24
Identities = 78/86 (91%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 107 ATACATCAGCGGTAACATTGGAATGGGCATTGTCAAGC-TTGTTGAACAATCCAGAGGTA 165
||||||||||||||||||||||||||||||| |||||| || ||||||||||| || |||
Sbjct 947 ATACATCAGCGGTAACATTGGAATGGGCATTATCAAGCCTT-TTGAACAATCCTGAAGTA 1005
Query 166 CTGAAAAAGGCGAGAGATGAGATCGA 191
|| ||||||| ||||||||| |||||
Sbjct 1006 CTAAAAAAGGTGAGAGATGAAATCGA 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5