BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353421
Length=2643
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34100.1 | Symbols: | RING/U-box superfamily protein | chr4... 2124 0.0
AT4G34103.1 | Symbols: | pseudogene of protein binding / zinc ... 337 4e-91
> AT4G34100.1 | Symbols: | RING/U-box superfamily protein | chr4:16330467-16335074
FORWARD LENGTH=3660
Length=3660
Score = 2124 bits (1150), Expect = 0.0
Identities = 1550/1735 (89%), Gaps = 59/1735 (3%)
Strand=Plus/Plus
Query 945 AGAAGCTGGATCATCCCTCCTTAAACAGTTCTCGGCAGCAATGAGGCATCTGATGACTAT 1004
|||||||| | |||||||||||| |||||||| |||||||||||||||||||||||| ||
Sbjct 1629 AGAAGCTGTACCATCCCTCCTTAGACAGTTCTTGGCAGCAATGAGGCATCTGATGACCAT 1688
Query 1005 GCTCAAAGCTACCTGTT-TTTAT-GTCTA-C-TTCTTAGGGGTCTTCCCTCTGATGTGTG 1060
| |||||| | ||| || ||| | ||| | | ||| |||||||| |||||||||||||
Sbjct 1689 GATCAAAGTTGCCT-TTCTTT-TGGTC-ATCGAGCTT-GGGGTCTTTCCTCTGATGTGTG 1744
Query 1061 GGTGGTCGCTAGATATTTGCACGGTTGGGATGTTTGGTAAAACAATGTCCCACAGAGTAC 1120
| |||| ||||||| ||||||| ||| ||||||| |||||||||||||||||||| ||||
Sbjct 1745 GTTGGTGGCTAGATGTTTGCACTGTTAGGATGTTCGGTAAAACAATGTCCCACAGGGTAC 1804
Query 1121 AGTTTTTATCAACTTCTCCAT-TGGTAAGCTCACTTCTTCATTGGGTTGTTGGATTCATG 1179
|||||||||||| |||||| | ||| |||||||||| ||||||||||||||||| |||||
Sbjct 1805 AGTTTTTATCAATTTCTCC-TCTGGCAAGCTCACTTGTTCATTGGGTTGTTGGAATCATG 1863
Query 1180 TACCTCATGTTTAC-AAT--G-ATCTTCGAAAGCCTTCTTCGAGAGGTTCTTCGACCTGG 1235
|| |||| || | ||| | ||||||| ||||||||||||| ||||||||| |||||
Sbjct 1864 TA---CATG-TTGCAAATAAGCATCTTCGTCAGCCTTCTTCGAGGGGTTCTTCGTCCTGG 1919
Query 1236 AGTTTTGTATTTCCTT-GATTATCTTGAAGATCCTAATGT-CGATCCGTTCCAAGATATG 1293
|||| ||||||||||| | | ||| | |||||||||| | | |||| |||| |||| ||
Sbjct 1920 AGTTCTGTATTTCCTTCG-TGATCCAGCAGATCCTAAT-TACAATCCATTCCGAGATTTG 1977
Query 1294 ATTGATGATCCAGTACACAAGCAAGCTCGGAAGGTTCTGTTAGAAACTGCAGTGTATGGA 1353
|||||||||||||| |||||||| ||||||| ||| |||||| | |||||||||||||
Sbjct 1978 ATTGATGATCCAGTGCACAAGCATGCTCGGAGGGTACTGTTATCAGTTGCAGTGTATGGA 2037
Query 1354 AGTTTGATTGTCATGCTGGTATTTTTGCCAGTCAAACTTGCGATCCGGATGGCTCCTTCA 1413
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2038 AGTTTGATTGTGATGCTGGTATTTTTACCAGTCAAACTTGCGATCCGGATGGCTCCTTCA 2097
Query 1414 ATCTTTCCACTCGACATATCTGTATCCGACCCATTCACTGAGATTCCAGCCGACATGCTT 1473
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2098 ATCTTTCCACTTGACATATCTGTATCCGACCCATTCACTGAGATTCCCGCCGACATGCTT 2157
Query 1474 CTGTTACAAATATGCATACCATTTGGT-ATCAAGCATTTCAGA-TTCCAGACCTCAATTA 1531
||||| ||||||||||| |||||| | ||| ||||||||||| || | |||| ||||||
Sbjct 2158 CTGTTTCAAATATGCATTCCATTT-ATCATCGAGCATTTCAGACTT-CGGACCACAATTA 2215
Query 1532 AGTCCCTTCTACGTTACTGGTTCACTGGTGTTGGTTGGGCGCTTGGTTTGACAGACTTCC 1591
||||||||||||| | |||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 2216 AGTCCCTTCTACGCTGCTGGTTCACTGGGGTTGGTTGGGCGCTTGGTTTAACAGACTTCC 2275
Query 1592 TCTTGCCAAGACCAGAGGACAACATTGGTCAGGACAATGGAAACGGTGAACCAGGAAGGC 1651
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2276 TCTTGCCAAGACCAGAAGACAACATTGGTCAGGACAATGGAAATGGTGAACCAGGAAGGC 2335
Query 1652 AGAACAGAGTACAAGTATTGCAGGTCGGTA-GACCAGATAGGCCCATGGCTGTTCTTCCA 1710
||||||||| |||||| ||||||||||| | |||| || ||| ||||||||| ||||||
Sbjct 2336 AGAACAGAGCACAAGTGTTGCAGGTCGG-AGGACCTGACAGGGCCATGGCTGCGCTTCCA 2394
Query 1711 GCAGCTGGTGACCCTAACAGAAGTCGCCTATGTGCTGGGAGTGTCAACACGGGTGAGGAA 1770
| ||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 2395 GTAGCTGATGACCCTAACAGAAGTCGCCTCCGTGCTGGGAATGTCAACACGGGTGAGGAA 2454
Query 1771 TATGAAGATGATGAAGAACAATCTGATTC--AGA-GTACAACTTTGTCGTCAGGATAA-- 1825
|||||||||||||| |||||||||||||| | | |||||||||||| ||| ||||||
Sbjct 2455 TATGAAGATGATGACGAACAATCTGATTCTGACAGGTACAACTTTGTGGTCCGGATAATT 2514
Query 1826 -TCCTCCTACTTGTTGCATGGGTGACTCTTCTTCTCTTCAATTCGGCATTGATAGTTGTA 1884
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2515 CTCCTTCTACTTGTTGCATGGGTGACTCTTCTTCTCTTCAATTCAGCATTGATAGTTGTG 2574
Query 1885 CCAGTTTCGGTTGGACGTACTCTATTCAGTGTCA-TCCCAATTCTCCCAACAACTCATGG 1943
||||||||| | |||||| |||||||||||| || |||| ||||| |||| |||||||||
Sbjct 2575 CCAGTTTCGCTGGGACGTGCTCTATTCAGTGCCATTCCC-ATTCTTCCAATAACTCATGG 2633
Query 1944 CATCAAATGCAATGACCTGTATGCTTTTGTCATTGGCACATATGCCTTGTGGACTACCAT 2003
|||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 2634 CATCAAGTGCAATGATCTGTATGCTTTCGTCATTGGCACATATGCCTTTTGGACTACCAT 2693
Query 2004 ATCTGGGGCCACGTACGCTATTGAGCATGTCAAGTCGAAGAGGACTTCAGTCTTGCTTAA 2063
||||||||||| ||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 2694 ATCTGGGGCCAGGTATGCTATCGAGCATGTCAAGTCAAAGAGGACTTCAGTCTTGCTTAA 2753
Query 2064 CCAAACATGGAAATGGTGTGAGATTGT-TTCCAAGAGCCCGGTGCTGTTAGCCATATGGG 2122
||||| |||||||||||||| |||||| || ||||||| |||||||||||||||||||||
Sbjct 2754 CCAAATATGGAAATGGTGTGGGATTGTATT-CAAGAGCTCGGTGCTGTTAGCCATATGGG 2812
Query 2123 TTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTTATTGTCCCAATGA 2182
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2813 TTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTGATTGTCCCAATGA 2872
Query 2183 GAGTCCCAGTTGATGAAAGCCCTGTCTTCCTCCTGTACCAAGACTGGGCTCTTGGGCTCA 2242
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 2873 GAGTCCCAGTTGATGAAAGCCCTGTGTTCCTCCTGTATCAAGACTGGGCTCTTGGGCTCA 2932
Query 2243 TCTTTTTGAAGATCTGGACTAGACTGGTAATGCTGGACCATATGCTTCCTATAGTGGATG 2302
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2933 TCTTTTTGAAAATCTGGACTAGACTGGTAATGCTGGATCATATGCTTCCAATAGTGGATG 2992
Query 2303 ATAGCTGGAGAGCAAAGTTTGAGAGGGTAAGAGAAGATGGCTTCACAAGGCTTCAAGGGT 2362
||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||
Sbjct 2993 ATAGCTGGAGAGCAAAGTTTGAGCGGGTAAGAGAAGATGGCTTCTCGAGGCTTCAAGGGT 3052
Query 2363 TATGGGTACTTAGAGAGATTGTGTTCCCGATTGTGATGAAACTCCTAACAGCTTTATGCG 2422
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 3053 TATGGGTACTTAGAGAGATTGTGTTCCCGATCGTCATGAAACTCCTAACGGCTTTATGCG 3112
Query 2423 TGCCTTATGTCCTGGCGAGAGGCGTGTTTCCAATGCTCGGATATCCGCTAGTAGTGAACT 2482
|||||||||| |||| ||||| ||||| |||||||||||||||||||| || |||||||
Sbjct 3113 TGCCTTATGTGTTGGCAAGAGGAGTGTTCCCAATGCTCGGATATCCGCTTGTTGTGAACT 3172
Query 2483 CGGCGGTCTACAGATTCACATGGATAGGCTGTCTCTCGGTGA---TC--CT-CTTCTG-- 2534
| ||||||||||||||| | |||||||| ||||| || |||| || || ||||||
Sbjct 3173 CAGCGGTCTACAGATTCGCGTGGATAGGTTGTCTTTCAGTGAGCCTCTTCTGCTTCTGTG 3232
Query 2535 C-----G-T-C--TG---G-TTCAGAAACCTTCACAACTCCATCCGTGATGACCGTTATC 2581
| | | | || | || ||||||||||||||||| |||||||||||||||||||
Sbjct 3233 CAAAAAGATGCCATGTCTGGTTTAGAAACCTTCACAACTCTATCCGTGATGACCGTTATC 3292
Query 2582 TCATTGGTCGGAGACTCCATAACTTTGGGGAATCTGCTTTGGCTAATCAAAACCA 2636
|||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||
Sbjct 3293 TCATTGGTCGGAGACTGCATAACTTTGGGGAAGCTGCTTTAGCTAATCAAAACCA 3347
Score = 869 bits (470), Expect = 0.0
Identities = 821/981 (84%), Gaps = 62/981 (6%)
Strand=Plus/Plus
Query 1 ATGGAGATTTCCTCGGCCGAATCGTTGTCCATCTCTGGCGCAACCGCCTCTGAGGTCGTC 60
|||||||||||| ||||||| |||||||||||||||||||| | || ||||||||||||
Sbjct 124 ATGGAGATTTCCCCGGCCGATTCGTTGTCCATCTCTGGCGCGGCTGCTTCTGAGGTCGTC 183
Query 61 TCGGAGCCTTCGGTATCTTCTTCGTCATCCTCCTCGCGCCTGTCTGCTTCGTCGCCGAAT 120
|| |||||||| ||||||||||| | | || | | || |||| |||||||||
Sbjct 184 TCCGAGCCTTCCGTATCTTCTTC-T--T-CT--T-----C---CT-CTTCCTCGCCGAAT 228
Query 121 CAGGCCTCTTCC-ACCGCTTTCTCCACCATGGATCAC-GCA-TTT-----GCTAC-GG-T 170
||||| || || | | ||||||| | |||||||| | ||| ||| || || || |
Sbjct 229 CAGGCATCACCCAATC-CTTTCTCAAACATGGATC-CTGCAGTTTCGACGGCGACAGGAT 286
Query 171 ---GG--C----A-G-T--TGAAGATGAGGAGGACGTGTGCAGGATTTGCAGAATTCCTG 217
|| | | | | |||||||| |||||||| |||||||| ||||||| |||||
Sbjct 287 CGAGGTACGTTGATGATGACGAAGATGAAGAGGACGTTTGCAGGATCTGCAGAAATCCTG 346
Query 218 GGGATACGGACAATCCGCTTCGGTATCCGTGCACCTGCCGCGGGAGCATCAAATTTGTTC 277
| ||| | ||||||||||||||||||||||| |||| |||| || |||||||||||||
Sbjct 347 GTGATGCAGACAATCCGCTTCGGTATCCGTGTGCCTGTAGCGGAAGTATCAAATTTGTTC 406
Query 278 ACCAGGATTGCCTCCTTCAGTGGCTTAATCACTGCAAAGCTCGTCACTGCGAGCTTTGCA 337
|||||||||| ||||||||||||||||||||| |||| |||||||| |||||| ||||||
Sbjct 407 ACCAGGATTGTCTCCTTCAGTGGCTTAATCACAGCAACGCTCGTCAATGCGAGGTTTGCA 466
Query 338 AACATCCTTTTTCATTCTCCCCAGTGTATGCTGAAAATGCTCCAACAAGGCTCCCTTTCC 397
| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 467 AGCATCCTTTTTCATTCTCCCCAGTATATGCTGACAATGCTCCGTCAAGGCTCCCTTTCC 526
Query 398 AGGAGTTTGTAGTTGCCATTGCCACGAAA-CTTTTCGGTGTTTTACACTTCTTTCTGCGG 456
||||||||||||||| |||||| | |||| | || | ||||||||| ||||||||||||
Sbjct 527 AGGAGTTTGTAGTTGGCATTGCTATGAAAGC-TTGCCATGTTTTACAGTTCTTTCTGCGG 585
Query 457 TTGAGCTTCCTGATTTCGGCCTGGTTTATCACTATTCCTTAT-ATCACATTTTGGGTATG 515
||||| || || |||| | |||| || ||||||| |||| | || ||||||||| ||||
Sbjct 586 TTGAGTTTTGTGCTTTCTGTCTGGCTTCTCACTATACCTT-TCATTACATTTTGGATATG 644
Query 516 GCGATTGGCTTTTGTACGGAGTTTTGGTGAAGCTCAGCGGTTGTTCTTAAGTCACATCTC 575
||| |||||||| || || | ||||||||||||||| ||||||||||||| ||||||||
Sbjct 645 GCGTTTGGCTTTCGTGCGAACTTTTGGTGAAGCTCAAAGGTTGTTCTTAAGCCACATCTC 704
Query 576 CACCACAGTAATTCTCACTGATTGTTTGCATGGGTTCTTACTGTCGGCAACAATT-TACT 634
|||||||||||||||||||||||| ||||||||||||||||| || |||| ||| | ||
Sbjct 705 CACCACAGTAATTCTCACTGATTGCTTGCATGGGTTCTTACTATCTGCAAGTATTGT-CT 763
Query 635 TC-TTTTACTTTGGAG-TAATTTTACTAAAGATGA-T-CTTTAGGCGTTTGCGAGAGCTA 690
|| | || | |||||| | | || | | ||| || | |||||||| || ||||||||
Sbjct 764 TCATCTT-CCTTGGAGCT-ACTTCA-TTAAG-GGACTACTTTAGGCACTTACGAGAGCT- 818
Query 691 AGGGGG-CAAGAAGAGAGAGACGATGAAGTGGACAGAAATGGTGCTCGTGCTGTC-AGAA 748
||||| |||||||||||||| ||||| ||||||||||||||||||||||||| | ||||
Sbjct 819 TGGGGGACAAGAAGAGAGAGATGATGATGTGGACAGAAATGGTGCTCGTGCTG-CAAGAA 877
Query 749 GACCTGCTGGACAGGCTAATAGGAATCTTGCGGGAGAGGAGAATTGCGAAGATGCTGGGG 808
||||||||||||||||||||||||||||||| ||||||| |||| | |||||||||||||
Sbjct 878 GACCTGCTGGACAGGCTAATAGGAATCTTGCTGGAGAGGGGAATGGTGAAGATGCTGGGG 937
Query 809 ATCAGGGTGCTGCGGTTGGTCAGATTGTTA-ATAGGAACCCTGAAAATGTTCTGGAAAGG 867
||||||||||||||||||||||||||| || | ||||| |||||||||||||||| ||||
Sbjct 938 ATCAGGGTGCTGCGGTTGGTCAGATTGCTAGA-AGGAATCCTGAAAATGTTCTGGCAAGG 996
Query 868 TTGGGCATACAAGCAGTTCGTATCGAGGCTCAGGTTGAACAGA-GTTTTCATGGTTTGGA 926
|||| ||||||||||| |||| | ||||||||||||||||||| |||| |||| |||||
Sbjct 997 TTGGACATACAAGCAGCTCGTCTTGAGGCTCAGGTTGAACAGATGTTTG-ATGGGTTGGA 1055
Query 927 CGACGCTGATGGTGAAGAAGA 947
||||||||||||| ||||||
Sbjct 1056 TGACGCTGATGGTGCAGAAGA 1076
> AT4G34103.1 | Symbols: | pseudogene of protein binding / zinc
ion binding protein | chr4:16335338-16335669 FORWARD LENGTH=332
Length=332
Score = 337 bits (182), Expect = 4e-91
Identities = 212/227 (93%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 2398 ATGAAACTCCTAACAGCTTTATGCGTGCCTTATGTCCTGGCGAGAGGCGTGTTTCCAATG 2457
|||||||||||||| |||||||| ||||||||||| |||||||||| ||||| ||||||
Sbjct 1 ATGAAACTCCTAACGGCTTTATGTGTGCCTTATGTGTTGGCGAGAGGAGTGTTCCCAATG 60
Query 2458 CTCGGATATCCGCTAGTAGTGAACTCGGCGGTCTACAGATTCACATGGATAGGCTGTCTC 2517
|||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct 61 CTCGGATATCCGCTAGTAGTGAACTCAGCGGTCTACAGATTCGCATGGATAGGTTGTCTC 120
Query 2518 TCGGTGATCCTCTTCTGCGTCTGGTTCAGAAACCTTCACAACTCCATCCGTGATGACCGT 2577
|| |||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||
Sbjct 121 TCAGTGAGCCTCTTCTGCTTCTGGTTTAGAAACCTTCACAACTCTATCCGTGATGACCGT 180
Query 2578 TATCTCATTGGTCGGAGACTCCATAACTTTGGGGAATCTGCTTTGGC 2624
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 TATCTCATTGGTCGGAGACTCCATAACTTTGGGGAAGCTGCTTTGGC 227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131236722888
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5