BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg353717
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31000.1 | Symbols: | Calmodulin-binding protein | chr4:151... 2549 0.0
AT2G24300.2 | Symbols: | Calmodulin-binding protein | chr2:103... 1140 0.0
> AT4G31000.1 | Symbols: | Calmodulin-binding protein | chr4:15103159-15105979
FORWARD LENGTH=2112
Length=2112
Score = 2549 bits (1380), Expect = 0.0
Identities = 1590/1690 (94%), Gaps = 20/1690 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAATTCCATGAACAAGAGAGGACATGGACACAATCAAGAACATGCAGACAACTTG 60
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 244 ATGGAAAATTCTATGAACAACAGAGGACATGGACACAATCAAGAACATGCAGACAACTTG 303
Query 61 CCAGAACCAAAGAGACAGAAGCTTCCTGCTTTGGCAAGTGTCATAGTGGAAGCTGTCAAG 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CCAGAATCAAAGAGACAGAAGCTTCCTGCTTTGGCAAGTGTCATAGTGGAAGCTGTCAAG 363
Query 121 GTAGATAGTCTGCAGAGGCTTTGCTCGTCTTTGGAACCATTATTTCGAAGAATTGTCAGT 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 364 GTAGATAGTCTGCAGAGGCTATGCTCGTCTTTGGAACCATTATTTCGAAGAATTGTCAGT 423
Query 181 GAAGAGGTGGAACGTGCCTTATCGAGATTGGAGAACTCGAAATCTATTTCAAGATCTCCA 240
|||||||||||||||||| |||| || ||||||||||||||||||| |||||||||| ||
Sbjct 424 GAAGAGGTGGAACGTGCCATATCAAGGTTGGAGAACTCGAAATCTACTTCAAGATCTACA 483
Query 241 GAACCGAAGAAGAATCAAGGCCTTGATGGAAGAAACCTGCAAATTCGCTTCAGAACACGA 300
|||||||| |||| ||||||||| ||||||||||| |||||| |||| ||||||||||||
Sbjct 484 GAACCGAATAAGATTCAAGGCCTCGATGGAAGAAATCTGCAACTTCGGTTCAGAACACGA 543
Query 301 ATGCCTCCTCATTTATTCACAGGTGGGAAAGTCGAGGGAGAGCAAGGCTCAGCCATTCAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 ATGCCTCCTCATTTATTCACAGGTGGGAAAGTCGAGGGAGAGCAAGGCTCAGCCATTCAC 603
Query 361 GTGGTTCTTATAGATGCAAACACCGGAAATGTAATCCAAACAGGACAAGAATCAATGGCA 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 604 GTGGTTCTTATAGATGCAAACACCGGAAATGTAATCCAAACAGGAGAAGAATCAATGACA 663
Query 421 AAGCTGAGTATTGTCGTCTTAGATGGAGACTTCAATGATGATGACGACGAAGATTGGACG 480
||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct 664 AAGCTGAATATTGTCGTGTTAGATGGAGACTTCAATGATGAAGACGACAAAGATTGGACG 723
Query 481 AGAGAACATTTTGAGAGCTTTGAAGTGAAGGAACGCGAAGGGAAACATCCCATCTTGACT 540
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 724 AGAGAACATTTTGAGAGCTTTGAAGTGAAGGAACGCGAAGGAAAACGTCCCATCTTGACT 783
Query 541 GGTGACAGACATGTGATACTTAAAGAAGGTGTAGGAACTCTTGGAAAACTTACTTTCACT 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GGTGACAGACATGTGATAATTAAAGAAGGTGTAGGAACTCTTGGAAAACTTACTTTCACT 843
Query 601 GACAATTCGAGCTGGATTAGGAGCAGAAAGTTTAGACTTGGTGTTAAGGCTGCATCGGGG 660
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 844 GACAATTCGAGCTGGATTAGGAGCAGAAAGTTTAGACTTGGTGTTAAGCCTGCAACGGGA 903
Query 661 TTTCACATACGTGAAGCTAAAACAGAGCCATTTGCTGTTAAAGATCACAGAGGAGAACTA 720
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 904 TTTCACATCCGTGAAGCTAAAACAGAACCATTTGCTGTTAAAGATCACAGAGGAGAACTA 963
Query 721 TACAAGAAACATTATCCACCGGCTTTACATGATGAAGTCTGGAGATTGGATAAAATAGCG 780
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 964 TACAAGAAACATTATCCACCGGTTTTACATGATGAAGTCTGGAGATTGGATAAAATAGCG 1023
Query 781 AAAGATGGAGTGCTACACAAGAAGCTACTAAAATCTAACATCGTGACTGTTAAAGACTTC 840
|||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1024 AAAGATGGAGCGCTACACAAGAAGCTACTAAAATCTAACATTGTGACTGTTGAAGACTTC 1083
Query 841 CTACGGATACTCATGAAGGATCCGCAGAAACTAAGAAGTTTGCTTGGGAGTGGAATGTCA 900
|||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1084 CTACAGATACTCATGAAGGATCCGCAGAAACTAAGAAGCTTACTTGGGAGTGGAATGTCA 1143
Query 901 AATAGAATGTGGGATAACACGGTGGAGCACGCAAAGACCTGTGTATTAGGTGGGAAACTT 960
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 1144 AATAGAATGTGGGATAACACGGTAGAGCACGCAAAGACTTGTGTCTTAGGTGGGAAACTT 1203
Query 961 TACGTCTATTACACAGATCAAACACACGAGACCGGTGTTGTCTTTAATCATATATATGAC 1020
|||| |||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 1204 TACGCCTATTACACAGATCAAACACACCAGACAGCTGTTGTCTTTAATCATATATATGAA 1263
Query 1021 TTCCAAGGCCTAATTGCCAATGGCCACTTCTTATCT-CTGGAATCTCTTAACCATGATCA 1079
|| ||||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||
Sbjct 1264 TTTCAAGGCCTAATTGCCAATGGCCACTTCTTGTCTTC-GGAATCTCTTAACCATGACCA 1322
Query 1080 AAAGATTTCTGCAGACATTTTGGTGAAGACAGCTTACGAGAACTGGCATAAAGTGGTTGA 1139
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1323 AAAGATTTCTGCAGACACTTTGGTGAAGACTGCTTACGAGAACTGGCATAAAGTGGTTGA 1382
Query 1140 GTATGACGGTAAGCTGTTGAATTGCTTACCAGTTGCTAAGAATGAAATAAAAA--TTGC- 1196
||||| ||||||||| |||||||||||||||||||||||||| | |||||||| ||||
Sbjct 1383 GTATGGCGGTAAGCTCTTGAATTGCTTACCAGTTGCTAAGAAGGGAATAAAAAGCTTGCC 1442
Query 1197 -----------T--C--AGAACCATCAAACGCAGCAGAAGACTCTGCAATGCCAACAGAC 1241
| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1443 AGAGCCAAAAATGGCTCAGAACCATCAAACGCAGCAGAAGGCTCTGCAATGCCAACAGAC 1502
Query 1242 TGCGAATGGCTACTCATGGGTTCCTCAGCATCTGATAGAGTATCCTTTAGTCCAACAACC 1301
|| |||||||||||||| | ||||||||||||||||||||||||||| |||||||||||
Sbjct 1503 TGTGAATGGCTACTCATCAGATCCTCAGCATCTGATAGAGTATCCTTTTGTCCAACAACC 1562
Query 1302 TTGCAATCAGTTACGAGACTACACATCGATGGAGAGTTCTTTGGTTTCGGGCTCATACAA 1361
|||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 1563 TTGCTATCAGTTACGAGACTACACATCGATGGAGAGTTCTTCAGTTTCAGGCTCATATAA 1622
Query 1362 TGGAGGCCTTGAAGATATTTTTACGGAGGAAATTCGAGCGAGGAGTTCTGAGATGCTGGA 1421
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1623 TGGAGGCCTTGAAGATATTTTCACGGAGGAAATTCGAGCGAGGAGTTCTGAGATGCTCGA 1682
Query 1422 GACCGATGACATGCAGAGATTGCTGAAGACATTTGGGATATCAGGCAGGTTTGGTCACAG 1481
||| ||| |||||||||||||||| ||||||||||||||||||||| |||||||| ||||
Sbjct 1683 GACGGATAACATGCAGAGATTGCTCAAGACATTTGGGATATCAGGCGGGTTTGGTAACAG 1742
Query 1482 GGATGAGTTCAGTTACGGTTTCAGTGATCGGTATGAAGCTCAGATAGATAAGGGTTATAG 1541
|||||||| || ||||||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct 1743 GGATGAGTCCATTTACGGTTTCAGTGATCAGTACGAAGCTCAGATAGACAAGGGTTATAT 1802
Query 1542 GAGAGAAGGAGGTCGAGGCGCAGGGAAAGCTGTAGTGGGATGGCTTAAGCTTAAAGCTGC 1601
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1803 GAGAGAAGGAGGTAGAGGCGCAGGGAAAGCTGTAGTGGGATGGCTTAAGCTCAAAGCTGC 1862
Query 1602 ATTGAGATGGGGTATCTTTATACGCAAGAAAGCTGCAGAGAGGAGGCCTCAGATTGTGGA 1661
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1863 ATTGAGATGGGGTATCTTTATACGCAAGAAAGCTGCAGAGAGGAGGCCTCAAATTGTGGA 1922
Query 1662 GATCGACTAA 1671
||||||||||
Sbjct 1923 GATCGACTAA 1932
> AT2G24300.2 | Symbols: | Calmodulin-binding protein | chr2:10340908-10343736
FORWARD LENGTH=2084
Length=2084
Score = 1140 bits (617), Expect = 0.0
Identities = 1018/1209 (84%), Gaps = 38/1209 (3%)
Strand=Plus/Plus
Query 9 TTCCATGAACAAGAGAGGACATGGACACAATCAAGAACATGCAGACAA-CTTGCCAGAAC 67
||||||||||||| ||||| | | | || |||||| || | ||||| | ||||||||
Sbjct 2 TTCCATGAACAAGCGAGGATACGAATGCAGTCAAGAGGATACTGACAAGC-TGCCAGAAT 60
Query 68 CAAAGAGAC-AGAAGCTTCCTGCTTTGGCAAGTGTCATAGTGGAAGCTGTCAAGGTAGAT 126
||||||||| | ||| | |||||||| |||||||| || |||||||||||||| ||||||
Sbjct 61 CAAAGAGACAAAAAG-TGCCTGCTTTAGCAAGTGTTATTGTGGAAGCTGTCAAAGTAGAT 119
Query 127 AGTCTGCAGAGGCTTTGCTCGTCTTTGGAACCATTATTTCGAAGAATTGTCAGTGAAGAG 186
||||||||||||||||||||||||||||| || || ||||| |||||||| || |||||
Sbjct 120 AGTCTGCAGAGGCTTTGCTCGTCTTTGGAGCCGTTGTTTCGCAGAATTGTTAGCGAAGAA 179
Query 187 GTGGAACGTGCCTTATCGAGATT-GGAGAACTCGAAA-TCT-ATTTCAAGATCTCCAGAA 243
|||||||| |||||||| || || ||| ||| | ||| | | | || || || ||||||
Sbjct 180 GTGGAACGAGCCTTATCAAGGTTGGGA-AACGC-AAAGT-TAACCTCGAGGTCACCAGAA 236
Query 244 CCGAAGAAGAAT-CAAGGCCTTGATGGAAGAAACCTGCAAATTCGCTTCAGAACACGAAT 302
|| ||| || || |||| || ||||||||||||||||| ||| ||| || || |||||
Sbjct 237 CCAAAG-AGGATCCAAGACCGCAATGGAAGAAACCTGCAACTTCACTTTAGGACGCGAAT 295
Query 303 GCCTCCTCATTTATTCACAGGTGGGAAAGTCGAGGGAGAGCAAGGCTCAGCCATTCACGT 362
||||||||| ||||||||||| |||||||| |||||||||| |||||| || ||||| ||
Sbjct 296 GCCTCCTCACTTATTCACAGGCGGGAAAGTTGAGGGAGAGCGAGGCTCGGCAATTCATGT 355
Query 363 GGTTCTTATAGATGCAAACACCGGAAATGTAATCCAAACAGGACAAGAATCA-ATGGCAA 421
||||||||||||||||||||| ||||||||| | ||||||||| |||||||| | |||
Sbjct 356 GGTTCTTATAGATGCAAACACAGGAAATGTAGTTCAAACAGGAGAAGAATCAGCT-TCAA 414
Query 422 AGCTGAGTATTGTCGTCTTAGATGGAGACTTCAATGATGATGACGACGAAGATTGGACGA 481
|||||| | |||| || ||||| || |||||||||||||| ||||| ||||| ||||| |
Sbjct 415 AGCTGAATGTTGTAGTGTTAGAGGGTGACTTCAATGATGAAGACGATGAAGACTGGACCA 474
Query 482 GAGAACATTTTGAGAGCTTTGAAGTGAAGGAACGCGAAGGGAAACATCCCATCTTGACTG 541
|||| || |||||||||||||||||||| || || |||||||||| |||||||| ||||
Sbjct 475 GAGAGCACTTTGAGAGCTTTGAAGTGAAAGAGCGAGAAGGGAAACGCCCCATCTTAACTG 534
Query 542 GTGACAGACATG-TGA-TACTTAAAGAAGGTGTAGGAACTCTTGGAAAACTTACTTTCAC 599
| |||| ||| | | | | ||||| |||||||| |||||||||||| |||||||||||||
Sbjct 535 GGGACACACA-GAT-AGTGCTTAAGGAAGGTGTGGGAACTCTTGGAGAACTTACTTTCAC 592
Query 600 TGACAATTCGAGCTGGATTA-GGAGCAGAAAGTTTAGACTTGGTGTTAA---GGCTGCA- 654
|||||| ||||| |||| || | ||| |||||||||| ||||||||||| |||| ||
Sbjct 593 TGACAACTCGAGTTGGA-TACGTAGCCGAAAGTTTAGGCTTGGTGTTAAGCCGGCTTCAG 651
Query 655 --T-CGG-G---G-TTTCACATACGTGAAGCTAAAACAGAGCCATTTGCTGTTAAAGATC 706
| || | | ||| ||| |||||||| |||||||| || |||||||| |||||||
Sbjct 652 GGTATGGTGATAGCTTTTGCATTCGTGAAGCCAAAACAGAACCTTTTGCTGTCAAAGATC 711
Query 707 ACAGAGGAGAACTATACAAGAAACATTATCCACCGGCTTTACATGATGAAGTCTGGAGAT 766
| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 712 ATAGAGGAGAACTATACAAGAAACATTATCCACCGGCTGTACACGATGAAGTCTGGAGAC 771
Query 767 TGGATAAAATAGCGAAAGATGGAGTGCTACACAAGAAGCTACTAAAATCTAACATCGTGA 826
||||| |||||||||||| ||||||||||||||||||||| | ||| |||| || ||||
Sbjct 772 TGGATCGAATAGCGAAAGACGGAGTGCTACACAAGAAGCTATTGAAAGCTAATATTGTGA 831
Query 827 CTGTTAAAGACTTCCTACGGA-TACTCATGAAGGATCCGCAGAAACTAAGAAGTTTGCTT 885
| || |||||||||| | || | || | |||||||| ||||| || |||| |||||||
Sbjct 832 CAGTCGAAGACTTCCTTC-GACTCCTTGTTAAGGATCCACAGAAGCTGAGAAATTTGCTT 890
Query 886 GGGAGTGGAATGTCAAATAGAATGTGGGATAACACGGTGGAGCACGCAAAGACCTGTGTA 945
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 891 GGGAGTGGAATGTCGAATAGAATGTGGGAGAACACGGTGGAGCACGCAAAGACGTGCGTG 950
Query 946 TTAGGTGGGAAACTTTACGTCTATTACACAGATCAAACACACGAGACCGGTGTTGTCTTT 1005
|| |||||||| ||||| || | ||||||||| ||||| |||| || || ||||||||
Sbjct 951 TTGGGTGGGAAGCTTTATGTGTTTTACACAGACCAAACTCACGCTACAGGCGTTGTCTTC 1010
Query 1006 AATCATATATATGACTTCCAAGGCCTAATTGCCAATGGCCACTTCTTATCTCTGGAATCT 1065
|||||||||||||| |||| |||||||||| | || || || ||| ||||||| || |||
Sbjct 1011 AATCATATATATGAATTCCGAGGCCTAATTACAAACGGACAGTTCCTATCTCTAGAGTCT 1070
Query 1066 CTTAACCATGATCAAAAGATTTCTGCAGACATTTTGGTGAAGAC-AGCTTACGAGAACTG 1124
||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1071 CTTAACCATGACCAAAAGATTTCTGCAGACATTTTGGTGAAG-CTGGCTTACGAGAACTG 1129
Query 1125 GCATAAAG-TGGTTGAGTATGACGGTAAGCTGTTGAATTGCTTACCAGTTGCTAAGAATG 1183
|||||||| | |||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1130 GCATAAAGCT-ATTGAGTATGACGGTAAGCTGTTGAATTGCTTACCAGTTGCCGAGAAGG 1188
Query 1184 AAATAAAAA 1192
|||||||||
Sbjct 1189 AAATAAAAA 1197
Score = 180 bits (97), Expect = 5e-44
Identities = 170/204 (83%), Gaps = 10/204 (5%)
Strand=Plus/Plus
Query 1469 GGTTTGGTCACAGGGATGAGTTC-AGTTACGGTT-TCAGTGAT-CGGTATGAAGCTCAGA 1525
|||||||||| | |||||| || ||||||||| | || || | ||| |||||||||
Sbjct 1603 GGTTTGGTCAGACTGATGAG-TCTTGTTACGGTTAT-AG-CATCCCGTACCAAGCTCAGA 1659
Query 1526 TAGATAA-GGGTTATAGGAGAGAA-GGAGGTCGAGGCGCAGGGAAAGCTGTAGTGGGATG 1583
| ||||| | || | |||||| | | | ||||| | ||||||||||| || |||||
Sbjct 1660 TCGATAACACG-TACCGAAGAGAACGTA-ATAGAGGCTCGGGGAAAGCTGTTGTTGGATG 1717
Query 1584 GCTTAAGCTTAAAGCTGCATTGAGATGGGGTATCTTTATACGCAAGAAAGCTGCAGAGAG 1643
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 GCTAAAGCTTAAAGCTGCTTTGAGATGGGGTATCTTTATACGCAAGAAAGCTGCAGAGAG 1777
Query 1644 GAGGCCTCAGATTGTGGAGATCGA 1667
|||||||||||||||||||||||
Sbjct 1778 AAGGCCTCAGATTGTGGAGATCGA 1801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579896525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5