BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354010
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27860.1 | Symbols: | vacuolar iron transporter (VIT) famil... 1201 0.0
AT4G27852.1 | Symbols: | Potential natural antisense gene, loc... 128 2e-28
> AT4G27860.1 | Symbols: | vacuolar iron transporter (VIT) family
protein | chr4:13873797-13876526 FORWARD LENGTH=2133
Length=2133
Score = 1201 bits (650), Expect = 0.0
Identities = 768/826 (93%), Gaps = 4/826 (0%)
Strand=Plus/Plus
Query 926 AAACTCAAAATAACGATGACCAAGATGCAAATCCTGATCAAGATTTTGACAAGAAAACAG 985
||||||||||| ||||| | ||| |||| ||||||| |||||| | |||||| ||||||
Sbjct 1024 AAACTCAAAATCACGATAAAGAAGCTGCAGATCCTGACCAAGATGTAGACAAGGAAACAG 1083
Query 986 ACAACCAAAACAA-TCACCTAACTCCGATATATCCATCAACACTGGAGCAACCTTCCAAG 1044
| |||||||| || ||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1084 AGAACCAAAA-AAGTCACCTAACTCCGATATATCCTTCACCACTGGAGCAACCTTCCAAG 1142
Query 1045 AAAATTATCAATAAGGAAACTCAAGCAGAACCTGTATTGCCACCTAATGCTCAACCAGAG 1104
||||||||||||||||||||||| |||||||| | |||||||||||||||||| |||||
Sbjct 1143 CAAATTATCAATAAGGAAACTCAAACAGAACCTATGTTGCCACCTAATGCTCAATCAGAG 1202
Query 1105 ATCCCAAATAGTGTTGAACCACGCAAAGACGGTAATAAACTCGAAATCCTGAAAAGTATT 1164
|||||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||
Sbjct 1203 ATCCCAAATAGTGTTGAACCACGCAAAGGCGGTAATAAAGTAGAAATTCTGAAAAGTATT 1262
Query 1165 GTGTATGGAGGTCTTACAGAATCCATCACAAGCCTTTGCACCGTAACATCTGCGGCGGCG 1224
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1263 GTGTATGGAGGTCTTACAGAATCCATCACAAGCCTATGCACGGTAACATCTGCGGCAGCT 1322
Query 1225 ACTGGTGCTTCAACTCTGAACGTTTTAGCCTTGGGAGTTGCCAATTTGTCAAGCGGTCTT 1284
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 TCTGGTGCTTCAACTCTGAACGTTTTAGCCTTGGGAGTTGCCAATTTGTCAAGCGGTCTT 1382
Query 1285 CTTCTGACCGTTCACAGTCTCCAAGAACTAATAAACGAGAAACCCAGAAGACAAACAAAC 1344
|||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1383 CTTCTGACTGTTCACAGCCTCCAAGAACTAATAAACGAGAAACCCAGAAAACAAACCAAC 1442
Query 1345 ACTGATGATTCTCCAGGAGAAGTAGAAGGAGAAGAAGATCGATACGAGGAAGTTCTCGGA 1404
|||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1443 ACTGATGATTCTCCAGAAGAAGGAGAAGGAGAAGAAGATCGATACGAGGAAGTACTCGGG 1502
Query 1405 AGAAGAGAGTATTCGAGGCTTCACAGATTGATCGCAATCTCTTCTTTCGTCGTCTTCGGC 1464
|||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 1503 AGAAGAGAGTATTCGAGGATTCACAGAGTGATCGCAATCTCTTCTTTCGTCATCTTCGGA 1562
Query 1465 TTGATCCCACCTTTGGTATACGGCTTCTCGTTTCGAAGAA-GATTGGAGAAGAGACAAGA 1523
|||||||||||||| |||||||| ||||||||||||| || ||| ||| |||||||||||
Sbjct 1563 TTGATCCCACCTTTAGTATACGGTTTCTCGTTTCGAAAAAAGAT-GGAAAAGAGACAAGA 1621
Query 1524 GTACAAGGTTTTAGCAGTTTACGCAGTGTCTCTACTCTGCGTCGTCTTGCTCTCAATTGC 1583
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1622 GTACAAGGTTTTAGCTGTTTACGCAGTGTCTCTACTCTGCATCGTCTTGCTCTCAATAGC 1681
Query 1584 GAAAGCTTACGTCTCGAAGAAACGGGATTATGTCAAGACTCTGTTTCGGTACACGACGAT 1643
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1682 GAAAGCTTACGTGTCGAAGAAACGCGATTATGTCAAGACTCTGTTTCGGTACACGACGAC 1741
Query 1644 GGCGACGACGGCATCGGGATTCTCTCAATTTGTGGGATACTTGGTCAGTCAGTGGCTTGA 1703
|||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1742 GGCGACGACGGCGTCGGGATTCTCTCAATTTGTGGGATACTTGGTGAGTCAATGGCTTGA 1801
Query 1704 GAAAAGCGGGCTTTATGATGATTCTTCAGAAACTCAACGAGTTTGA 1749
|||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1802 GAAAAGCGGGTTTTATGATGATTCTCCAGAAACTCAACGAGTTTGA 1847
Score = 1103 bits (597), Expect = 0.0
Identities = 926/1075 (86%), Gaps = 62/1075 (6%)
Strand=Plus/Plus
Query 1 ATGGAACCTACCACGAATCCAACTCCAACTCCAAGCTCCGCCGGCAACAGTGTCTGTACC 60
||||| || |||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 12 ATGGATCCCACCATGAATCCAACTCCAACTCCAAGCTCCGCCGGCAACAGTGTCTGCACA 71
Query 61 GATGAATTGACCAACCTGCCCCCGGA--A-TCGCCACTAGGCAGCCAGGAGGACGATGGC 117
||||||||||||||||| |||||||| | |||||||| | |||| || |||| ||| ||
Sbjct 72 GATGAATTGACCAACCTTCCCCCGGAGGACTCGCCACTCGACAGCGAGAAGGATGATAGC 131
Query 118 GTTGACTTCAGCCACGAACAAGGATCGGAGTCAAATGAAGCTATTGACACTGAGAATGGT 177
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 GTTGACTTCAGCCAGGAGCAAGGATCGGAGTCAAATGAAGCTATTGACACTGAGAATGGT 191
Query 178 TCAAGATCCATAGACAAGAACCAATGCTCTGAAACTGAAGATGTAGTTAGAGCAAAAGAT 237
||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 192 TCAAGATCCGTAGACAAGAACCAATACTCTGAAACTGAAGTTGTAGTTAGAGCAAAAGAT 251
Query 238 TTACAGACAGAACCTGATTCACTGGATGATGATGTGGAGATTGTAATCAAGAACCAACAT 297
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 252 TTACAGACAGAACCTGATTCACTGGATGATGATGTGGAGATTGTGATCAAAAACCAACAT 311
Query 298 AAGTATTACTTTTACTGCCCTTGCTGTGGTGAAGATATCACCAAAACAGTCAAGCTCGTA 357
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 AAGTATTACATATACTGCCCTTGCTGTGGTGAAGATATCACCAAAACAGTCAAGCTCGTG 371
Query 358 AAGATGTCAGATCCCCAACCCACAAAAGACCATGACACTGAGAATAGAGCTAATGACAGT 417
||||| ||||||||| ||| ||||||||||||||||| || | | | |||||||
Sbjct 372 AAGATATCAGATCCCAAACACACAAAAGACCATGACAA--AGC-T-G---T--TGACAGT 422
Query 418 GACATTGAGAATGGTTCAAGATCCATAGGCaaaaaaaCAAAGGTTCCATCATGGTT-TCT 476
|||| |||||||||||||| ||||| || ||| || |||||||||||||||||||| |||
Sbjct 423 GACACTGAGAATGGTTCAAAATCCAAAGACAAGAACACAAAGGTTCCATCATGGTTCTCT 482
Query 477 TGATTTT-TGTCAGCCGCTGGTTTCTTCTGTTTATGGTCCTAACAAAGACCAAGGCGAGA 535
|||||| | |||||||||| ||||||||| | | | | ||||| |||| | |
Sbjct 483 -GATTTTAT-TCAGCCGCTGTTTTCTTCTGA--A-GA-CAGAGGAAAGA--AAGG-G-GT 532
Query 536 AAGGGGTTGATTCAAAGTTACCAGAAACTTCCGATGACCTTGATATCAATGGTGAAGAAC 595
| |||||||| |||||| || ||||| ||| || || | ||||| |||||| ||||
Sbjct 533 T-G---TTGATTCAGAGTTACTAGGAACTTACGAAGATCTCGGTATCATTGGTGAGGAAC 588
Query 596 CAAGCATTGATGTCAGTAATGAGAAAGGCGGACCGAGTTTTCCAAAGTGGTACCTCGATG 655
| ||||| ||||||||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 589 CGAGCATAGATGTCAGTAACGAGAAAGACAGACCGAGTTTTCCAAAGTGGTACCTCGATG 648
Query 656 TTTTTGCTTGGTTGTTCCTCTGTATTATTATTGCTCTCTCTGTCCTTTCGACTTCTCCAC 715
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 649 TTTTTGCTTGGTTATTCCTCTGTATTATTATTGCTCTTTCTGTCCTTTCGACTTCTCCAC 708
Query 716 CGCCTTTCATTCAACCGCATCTGCAATTGCCTTCTATGCCTTCATTGCGGCTGCCTTCCG 775
|||||||||||||||| ||||||||||| || ||||||||| ||||| || ||||||| |
Sbjct 709 CGCCTTTCATTCAACCACATCTGCAATTACCATCTATGCCTACATTGAGGATGCCTTCTG 768
Query 776 CTTCTATACTTTTGTTACTTCCCACGTTTGCGGTGTTGCTTCTCTTCATTATTTCAATGA 835
||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 769 CTTCTGTACTTTTGTTACTTCCCACATCTGCGGTGTTGCTTCTCTTCATTATTTCAATGA 828
Query 836 GGTCCCGTTTCAGTCCAAGATATCACGAGGAGAAAGGCGAAAATAGGGTCGATTCC-AAG 894
|||||||||||| ||| ||||||||| ||||||||||||| || ||| |||| |||
Sbjct 829 GGTCCCGTTTCACTCCGAGATATCACAAGGAGAAAGGCGA-----GG-TCG-TTCCCAAG 881
Query 895 TCTACTAATACCACTAGTGAAGAACCAGCAAAAACTCAAAATAACGATGACCAAGATGCA 954
|||||| || ||| ||| | ||| ||||||||||| ||||
Sbjct 882 TCTACTGATTCCA--AGT------C----------TCA------CGATGACCAAGCTGCA 917
Query 955 AATCCTGATCAAGATTTTGACAAGAAAACAGACAACCAAAACAA-TCACCTAACTCCGAT 1013
||| |||||||||||||||||||||||||||||||| |||| || || ||||||||| ||
Sbjct 918 AATACTGATCAAGATTTTGACAAGAAAACAGACAAC-AAAAGAAATCGCCTAACTCCTAT 976
Query 1014 ATATCCATCAACACTGGAGCAACCTTCCAAGAAAATTATCAATAAGGAAACTCAA 1068
||| || ||| |||| ||| ||||||||||| ||| | |||||||||||||||||
Sbjct 977 ATACCCTTCATCACTAGAGAAACCTTCCAAGCAAACTGTCAATAAGGAAACTCAA 1031
> AT4G27852.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT4G27850 and AT4G27860 | chr4:13872079-13873907
REVERSE LENGTH=1589
Length=1589
Score = 128 bits (69), Expect = 2e-28
Identities = 89/98 (91%), Gaps = 3/98 (3%)
Strand=Plus/Minus
Query 1 ATGGAACCTACCACGAATCCAACTCCAACTCCAAGCTCCGCCGGCAACAGTGTCTGTACC 60
||||| || |||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 100 ATGGATCCCACCATGAATCCAACTCCAACTCCAAGCTCCGCCGGCAACAGTGTCTGCACA 41
Query 61 GATGAATTGACCAACCTGCCCCCGGA--A-TCGCCACT 95
||||||||||||||||| |||||||| | ||||||||
Sbjct 40 GATGAATTGACCAACCTTCCCCCGGAGGACTCGCCACT 3
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86495539035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5