BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg354696 Length=1644 Score E Sequences producing significant alignments: (Bits) Value AT4G20860.1 | Symbols: | FAD-binding Berberine family protein ... 2470 0.0 > AT4G20860.1 | Symbols: | FAD-binding Berberine family protein | chr4:11172622-11174467 FORWARD LENGTH=1846 Length=1846 Score = 2470 bits (1337), Expect = 0.0 Identities = 1482/1554 (95%), Gaps = 2/1554 (0%) Strand=Plus/Plus Query 92 TTCAATGTGTCAAATCTGTTTATTCTACTCCCACAAGAGAACAATTCCAAAATTGCTTGT 151 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 145 TTCTATGTGTCAAATCTGTTTATTCTACTCCGACAAGAGAACAATTCCAAAATTGCTTGT 204 Query 152 CCACAAAACAATTCAATTCAACCTTCCAAAACCCTATAAATCTCACCACTCATAAACCAG 211 ||||||||||||||||||| ||| || ||||||||||||||||||||||||||| || || Sbjct 205 CCACAAAACAATTCAATTCTACCCTCAAAAACCCTATAAATCTCACCACTCATACACTAG 264 Query 212 ATTCCCGAG-TCTACACCGACTTTTCCGAATCTTCATCTCCAAATTCTACTTTCCTCAAC 270 ||||||||| || |||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 265 ATTCCCGAGTTC-ACACCGACTTTTCCGAGTCTTCATCTCCAAATTCTAGTTTCCTCAAC 323 Query 271 TTGAATTTCACCAGTTTGAAGCCGATTCTGATCGTAAAACCGAAATCCGAATCCGAAATC 330 ||||||||||| || |||||||||||||| ||||| || || ||||||||||||||||| Sbjct 324 TTGAATTTCACAAGCTTGAAGCCGATTCTCATCGTTAAGCCAAAATCCGAATCCGAAATA 383 Query 331 AAACAATCAATTCTATGCAGCAGGAAACTTGGAGTACAAGTAAGAACCATGAGTGGTGGT 390 |||||||| ||| |||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 384 AAACAATCGATTTTATGCAGCAGGAAACTTGGAGTGCAAGTAAGAACAATGAGTGGTGGT 443 Query 391 CATGACTACGAAGGTCTATCTTACCTCTCACAATCACCATTCATAATCGTTGACCTCGTT 450 ||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| Sbjct 444 CATGACTACGAAGGTCTATCTTACCTCTCACTATCACCTTTCATAATCGTCGACCTCGTT 503 Query 451 AACCTCAGATCGATCAACCTCAACCTCACAGACGACAACGCTTGGATCCAATCGGGCGCA 510 ||||||||||| |||| | |||||||||||||||| | |||||||||||||||||||||| Sbjct 504 AACCTCAGATCAATCAGCATCAACCTCACAGACGAGACCGCTTGGATCCAATCGGGCGCA 563 Query 511 ACACTCGGCGAACTCTATTACAAAATCGCCAAAACCAGCAAGATCCATGCCTTTGCCGCA 570 |||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 564 ACACTCGGCGAAGTCTACTACAAGATCGCCAAAACCAGCAAGATCCATGCCTTTGCCGCA 623 Query 571 GGGATATGTCCAAGTGTTGGTGTTGGCGGGCATATTAGCGGTGGAGGATTCGGTACAATA 630 |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| Sbjct 624 GGGATATGTCCAAGTGTTGGTGTTGGTGGACATATTAGCGGAGGAGGATTCGGTACAATA 683 Query 631 ATGAGGAAACACGGTTTAGCGTCTGATAACGTTGTAGACGCGCGTTTGATGGACGTAAAT 690 ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||| Sbjct 684 ATGAGGAAATACGGTTTAGCGTCTGATAACGTTGTGGACGCACGTTTGATGGATGTAAAT 743 Query 691 GGGAAAATTCTTGACCGGAAAACGATGGGGGAGGATTTGTTTTGGGCGCTAAGAGGCGGT 750 ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 744 GGGAAAACTCTTGACCGGAAAACGATGGGAGAGGATTTGTTTTGGGCGCTTAGAGGCGGT 803 Query 751 GGAGCTGCAAGTTTTGGCGTTGTCTTGTCATGGAAGGTTAAGCTTGCTAGGGTTCCTGAA 810 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 804 GGAGCTGCGAGTTTTGGCGTTGTCTTGTCGTGGAAGGTTAAGCTTGCTAGGGTTCCTGAA 863 Query 811 AAGGTTACTTGTTTCATAAGTCAACATACGATGGGACCGAGCATGAACAAGCTTGTTCAT 870 ||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 864 AAGGTAACTTGTTTCATAAGTCAACATCCGATGGGACCTAGCATGAACAAGCTTGTTCAT 923 Query 871 AGATGGCAATCCATAGGATCAGAGCTAGACGAAGATTTATTCATCAGAGTTATTATTGAT 930 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 924 AGATGGCAATCCATAGGATCAGAGCTAGACGAAGATTTATTCATCAGAGTCATTATTGAC 983 Query 931 AACAGTCTAGAAGGGAATCAAAGAAGAGTGAAATCTACATTTCAAACTCTTTTTCTTGGT 990 ||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| Sbjct 984 AACAGTCTAGAAGGGAATCAAAGAAAAGTGAAATCAACATTTCAAACTCTATTTCTTGGT 1043 Query 991 GGAATCGATAGATTGATTCCTCTGATGAACCAGAAGTTTCCGGAACTCGGTTTACGATCT 1050 |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1044 GGAATCGATAGACTGATTCCTCTGATGAACCAGAAGTTTCCGGAACTCGGCTTACGATCT 1103 Query 1051 CAAGACTGCTCGGAAATGAGCTGGATCGAATCGATAATGTTCTTCAACTGGAGATCAGGA 1110 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1104 CAAGACTGTTCGGAAATGAGCTGGATCGAATCGATAATGTTCTTCAACTGGAGATCAGGA 1163 Query 1111 CAGCCGTTAGAGATTTTGCTCAACAGAGACCTAAGATTCGAAGATCAGTATTTCAAAGCA 1170 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1164 CAGCCGTTAGAGATTTTGCTCAACAGAGACCTAAGATTCGAGGATCAGTATTTCAAAGCA 1223 Query 1171 AAATCAGATTATGTTCAAAAACCCGTTCCTGAAAACGTTTTCGAAGAAGTAACCAAGAGA 1230 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1224 AAGTCAGATTATGTTCAAAAACCCGTTCCTGAAAACGTTTTCGAAGAAGTAACCAAGAGA 1283 Query 1231 TTTCTCGAGCAAGATACTCCATTGATGATCTTCGAGCCATTGGGTGGGAAAATCAGCAAG 1290 ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 1284 TTTCTCGAGCAAGATACTCCACTGATGATCTTTGAGCCATTGGGTGGGAAAATCAGCAAG 1343 Query 1291 ATTTCAGAAACAGAGTCTCCATATCCACACAGGAGAGGGAATCTGTATAATATACAGTAC 1350 |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1344 ATTTCAGAAACAGAATCTCCATATCCACACAGAAGAGGTAATCTGTATAATATACAGTAC 1403 Query 1351 ATGGTGAAATGGAAAGTGAATGAAGTCGAGGAGATGAACAAACATGTTAGGTGGATGAGA 1410 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1404 ATGGTGAAATGGAAAGTGAATGAAGTCGAGGAGATGAACAAACATGTCAGGTGGATGAGA 1463 Query 1411 TCGCTACACGATTACATGACTCCGTATGTTTCTAAATCGCCGAGAGGAGCTTATTTGAAT 1470 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1464 TCGTTACACGATTACATGACTCCGTATGTTTCTAAATCGCCGAGAGGAGCTTATTTGAAT 1523 Query 1471 TACAGAGATCTTGATTTGGGCTCGACCAAAGGGATCAACACAAGTTTCGAAGATGCGAGG 1530 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| Sbjct 1524 TACAGAGATCTTGATTTGGGCTCGACCAAAGGGATTAACACGAGTTTCGAAGATGCAAGG 1583 Query 1531 AAATGGGGTGAGACATATTTCAAAGGTAACTTCAAGAGATTGGGTTTGGTTAAAGGGAAG 1590 |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1584 AAATGGGGTGAGACTTATTTCAAAGGTAATTTCAAGAGATTAGGTTTGGTTAAAGGGAAG 1643 Query 1591 ATTGATCCCACAAATTTCTTCAGGAACGAACAGAGTATTCCTCCTCTGTTTTGA 1644 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1644 ATTGATCCAACAAATTTCTTCAGGAACGAACAGAGTATTCCTCCTCTGTTTTGA 1697 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81224481810 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5