BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg354720
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20340.1 | Symbols: | Transcription factor TFIIE, alpha sub... 1764 0.0
AT1G03280.1 | Symbols: | Transcription factor TFIIE, alpha sub... 1151 0.0
AT4G20810.1 | Symbols: | transcription initiation factor IIE (... 470 2e-131
AT5G48205.1 | Symbols: | zinc ion binding | chr5:19546937-1954... 56.5 7e-07
> AT4G20340.1 | Symbols: | Transcription factor TFIIE, alpha subunit
| chr4:10984707-10987748 FORWARD LENGTH=1547
Length=1547
Score = 1764 bits (955), Expect = 0.0
Identities = 1074/1129 (95%), Gaps = 17/1129 (2%)
Strand=Plus/Plus
Query 1 ATGGAAAAATCAATCACGGTGGTGCAGAAAACCGTTGTGCTCGAGCCGTTTATCAAGCTG 60
||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 120 ATGGACAAATCAATCACGGTGGTGCGGAAAACCGTTGTGCTCGAGCCGTTTGTCAAGCTG 179
Query 61 GTGAAGCTTTTAGTAAGGATTTTCTATGACAATTATACTCCGGAAAGCGATAATCAGCAG 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTGAGGCTTTTAGTAAGGATTTTCTATGACAATTATACTCCGGAAAGCGATAATCAGCAG 239
Query 121 AAATCTGCAAAAAATGTCAGAGGGACTGCTGTTATCGTGCTGGACGCGCTTGCGAGGCGG 180
||||||| |||||||| | ||| | ||||||||||||||||||||||||| ||||||||
Sbjct 240 AAATCTGTGAAAAATGTTAAAGGTAGTGCTGTTATCGTGCTGGACGCGCTTACGAGGCGG 299
Query 181 CAATGGGTTAGAGAAGAAGACTTGGCAAAAGAGTTGAAGCGGAATGCCAAGGAACTTCGA 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 300 CAATGGGTTAGAGAAGAAGACTTGGCAAAAGAGGTGAAGCGGAATGCCAAGGAGCTTCGA 359
Query 241 AAATTAATAAGACATTTTGAAGAACAAAAATTTGTCATGCGTTACCACAGGAAAGAGACT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAATTAATAAGACATTTTGAAGAACAAAAATTTGTCATGCGTTACCACAGGAAAGAGACT 419
Query 301 GCAAAGCGTGCGAAGATGTATAGTTATGCAGTGGGTGGTACAACTGATGGCCGAGCAGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCAAAGCGTGCGAAGATGTATAGTTATGCAGTGGGTGGTACAACTGATGGCCGAGCAGAG 479
Query 361 GACAATGTTAAGTTCCACACGCACTCGTATTGCTGTCTTGATTATGCACAGATATATGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GACAATGTTAAGTTCCACACGCACTCGTATTGCTGTCTTGATTATGCACAGATATATGAT 539
Query 421 ATTGTTCGTTATAAACTGCACCGGCTCaaaaaaaaaTTCAAAGATGAACTAGAAGATC-G 479
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | |
Sbjct 540 ATTGTTCGTTATAAACTGCACCGGCTCAAGAAAAAGTTCAAAGATGAACTAGAAGA-CAG 598
Query 480 AAATACTGTTCAGGAGTATGGCTGTCCTAACTGCAAAAGAAAGTATAATGCACTGGATGC 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 599 AAATACTGTTCAGGAGTATGGCTGTCCTAACTGCAAAAGAAAATATAATGCACTGGATGC 658
Query 540 CCTGAGATTAATTTCTATGGAAGACGATTCTTTTCATTGTGAAAATTGCAATGGTGAACT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CCTGAGATTAATTTCTATGGAAGACGATTCTTTTCATTGTGAAAATTGCAATGGTGAACT 718
Query 600 TGTTATGGAATGTAACAAACTAACTTCCGAAGAAGTAGTAGATGGAGGTGACAATGCAAG 659
|||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct 719 TGTTATGGAATGTAACAAGCTAATTTCCGAAGAAGTAGTAGATAGAGGTGACAATGCAAG 778
Query 660 GAGACGGCAGCGGGAGAAAGTAAAAGTTTGGCTTCAGGATTTGGAGGTTGAACTGAAACC 719
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 779 GAGACGGCAGCGGGAGAAAGTAAAAGTTTGGCTTCAGGATTTGGAGGGTGAACTGAAACC 838
Query 720 TCTGATGGAACTAATAAATAGAGTAAAAGACCTACCATTCCCTGCCTTTGAACCTTTTCC 779
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 839 CCTGATGGAACTAATAAATAGAGTAAAAGACCTACCGTTCCCTGCCTTTGAACCTTTTCC 898
Query 780 GGCATGGGAAGTTCGTGCTGCTAAGGCTGCTCGTGAAAATGGTGATCTTAACT-TAAATG 838
||||||||||| |||||| ||||||||||||||||||||||||||| ||||| | | ||
Sbjct 899 GGCATGGGAAGCTCGTGCAGCTAAGGCTGCTCGTGAAAATGGTGATTTTAACCCTGA-TG 957
Query 839 ATCCTTCAAGGTCACTGGGCGGGTATGGTTCAACACCAATGCCATTTCTGGGAGAGACAA 898
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 958 ATCCTTCAAGGTCTTTGGGCGGATATGGTTCAACACCAATGCCATTTCTGGGAGAGACAA 1017
Query 899 AGGTTGAGGTTAACCTTGGTGAAGGAAAAGAAGATGTCAAATCGAAAGGTGGAGATTCTA 958
|||||||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||
Sbjct 1018 AGGTTGAGGTTAACCTTGGTGAAGGAAATGAAGATGTCACATCTACAGGTGGAGATTCTA 1077
Query 959 GTCTGAAAATGTTGCCTCCATGGATGATCAAGCAAGGCATGAATCTGACCGAGGAACAAA 1018
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1078 GCCTGAAAATGTTGCCTCCATGGATGATCAAGCAAGGCATGAAGCTGACCGAGGAACAAA 1137
Query 1019 GAGGAGAGATGAGACAGGAAGCAAATGCTGATGGA----C--------TTTCAGATGACA 1066
||||||||||||||||||||||||||| ||||||| | ||||||||||||
Sbjct 1138 GAGGAGAGATGAGACAGGAAGCAAATGTTGATGGAGAAGCAGCAAAACTTTCAGATGACA 1197
Query 1067 AGAAATCAGTCATGGAAAATGGCGATGATAATAAGGATTTGAAGGCATG 1115
|||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1198 AGAAATCAGTCATGGAAAATGGCGATGATAATAAAGATTTGAAGG-ATG 1245
Score = 455 bits (246), Expect = 6e-127
Identities = 290/310 (94%), Gaps = 8/310 (3%)
Strand=Plus/Plus
Query 1147 GATGAGTATCTCAAAGCTTACTACGCCGCTATACTGGAGCAGCAAAAGCTTGCTGCAAAA 1206
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1242 GATGAGTATCTCAAAGCTTACTACGCCGCTATAATGGAGCAGCAAAAGCTTGCTGCAAAG 1301
Query 1207 CTGAATCAGCAAGAATCCGCAGGCGAATCAACAACCACTGACATTGAATCGGCTACTACA 1266
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 CTGAATGAGCAAGAATCCGCAGGCGAATCAACAACCACTGACATTGAATCGGCTACTACA 1361
Query 1267 TCCTCAGATCGTCAGGTTGGTATGAAGTCCAAACGCGAAGAGGAAGAAGAAGAAGATGTT 1326
| |||||||||||| |||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1362 TACTCAGATCGTCAAGTTGGTATGAAGTCCAAACGCGAAGA-G--GAAGAAGAAGATGTT 1418
Query 1327 GAATGGGAAGAACAAGCTTCTG-TGACAGCAAATGGAAACTACAAGGTGGATTTGAATGT 1385
|||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1419 GAATGGGAAGAAGGAGCTTCTGTTG-CAGCAAATGGAAACTACAAGGTGGATTTGAATGT 1477
Query 1386 GgaagcagaagaggcagaagaaaaagaagaagaagaTGACGATGAC-A--TCGATTGGGA 1442
|||||||||||||||||||||||||||||| | ||| || |||||| | |||| |||||
Sbjct 1478 GGAAGCAGAAGAGGCAGAAGAAAAAGAAGATGGAGACGAAGATGACGACATCGACTGGGA 1537
Query 1443 AGAAGGCTGA 1452
||||||||||
Sbjct 1538 AGAAGGCTGA 1547
> AT1G03280.1 | Symbols: | Transcription factor TFIIE, alpha subunit
| chr1:803035-807066 FORWARD LENGTH=1901
Length=1901
Score = 1151 bits (623), Expect = 0.0
Identities = 921/1064 (87%), Gaps = 24/1064 (2%)
Strand=Plus/Plus
Query 1 ATGGAAAAATCAATCACGGTGGTGCAGAAAACCGTTGTGCTCGAGCCGTTTATCAAGCTG 60
|||||||||||| | | |||||||||| ||||||| ||| |||| ||| ||||| ||
Sbjct 154 ATGGAAAAATCAGGC-C--CGGTGCAGAAAGCCGTTGTTCTCCAGCCATTTGTCAAGTTG 210
Query 61 GTGAAGCTTTTAGTAAGGATTTTCTATGACAATTATACTCCGGAAAGCGATAATCAGCAG 120
|||| |||| ||| ||| ||||||||| |||||||| || |||||||||||||||||
Sbjct 211 GTGAGGCTTGTAGCGAGGGCTTTCTATGATGATTATACTACGAAAAGCGATAATCAGCAG 270
Query 121 AAATCTGCAAAAAATG---TCAGAGGGACTGCTGTTATCGTGCTGGACGCGCTTGCGAGG 177
|||||||| | || || |||||||| ||| | | | ||||| |||||||| || |||
Sbjct 271 AAATCTGCTAGAAGTGACAACAGAGGGATTGCCGCTGTGGTGCTAGACGCGCTGGCAAGG 330
Query 178 CGGCAATGGGTTAGAGAAGAAGACTTGGCAAAAGAGTTGAAGCGGAATGCCAAGGAACTT 237
||||||||||||||||||||||||||||||||||| ||| || | | |||||| |||||
Sbjct 331 CGGCAATGGGTTAGAGAAGAAGACTTGGCAAAAGATTTGCAGTTGCACGCCAAGCAACTT 390
Query 238 CGAAAATTAATAAGACAT-TTTGAAGAACAAAAATTTG-TCATGCGTTACCACAGGAAAG 295
|||||| ||||||||| | ||||||||| |||| ||| | |||||| ||||| ||||||
Sbjct 391 CGAAAAATAATAAGAC-TCTTTGAAGAA-GAAAAGTTGATTATGCGTGACCACCGGAAAG 448
Query 296 AGACTGCAAAGCGTGCGAAGATGTATAGTTATGCAGTGGGTGGTACAACTGATGGCCGAG 355
||||||||||| |||| |||||||||||| |||||||| || |||||||||||||||||
Sbjct 449 AGACTGCAAAGGGTGCAAAGATGTATAGTGCTGCAGTGGCTGCTACAACTGATGGCCGAG 508
Query 356 CAGAGGACAATGTTAAG-TTCCACACGCACTCGTATTGCTGTCTTGATTATGCACAGATA 414
|||||||||| |||||| || ||||| ||||||||||||||||| |||||||||||||||
Sbjct 509 CAGAGGACAAAGTTAAGCTT-CACACCCACTCGTATTGCTGTCTCGATTATGCACAGATA 567
Query 415 TATGATATTGTTCGTTATAAACTGCACCGGCTCaaaaaaaaaTTCAAAGATGAACTAGAA 474
| ||| ||||||||| || |||||| ||| | ||||||| |||||||||| ||||||
Sbjct 568 TGTGACGTTGTTCGTTTTAGACTGCATCGGATGAAAAAAAGGCTCAAAGATGAGCTAGAA 627
Query 475 GATCGA-AATACTGTTCAGGAGTATGGCTGTCCTAACTG-CAAAAGAAAGTATAATGCAC 532
||| | |||||||||||||||||||||||||||||||| |||| |||| |||||||| |
Sbjct 628 GAT-AAGAATACTGTTCAGGAGTATGGCTGTCCTAACTGCCAAAGGAAA-TATAATGCGC 685
Query 533 TGGATGCCCTGAGATTAATTTCTATGGAAGACGATTCTTTTCATTGTGAAAATTGCAATG 592
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 686 TGGATGCTCTGAGATTAATTTCTATGGTAGACGATTCTTTTCATTGTGAAAATTGCAATG 745
Query 593 GTGAACTTGTTATGGAATGTAACAAACTAACTTCCGAAGAAGTAGTAGATGGAGGTGACA 652
||||||||||| ||||||| ||||| |||||||||||||||||||| ||||||| ||| |
Sbjct 746 GTGAACTTGTTGTGGAATGCAACAAGCTAACTTCCGAAGAAGTAGTTGATGGAGATGATA 805
Query 653 ATGCAAGGAGACGGCAGCGGGAGAAA-GT-AAAAGTTTGGCTTCAGGATTTGGAGGTTGA 710
||||||||||||||| |||||| ||| | |||| | | ||||||| | ||||||||| |
Sbjct 806 ATGCAAGGAGACGGCGGCGGGA-AAACCTAAAAAATAT-GCTTCAGAAATTGGAGGTTCA 863
Query 711 ACTGAAACCTCTGATGGAACTA-ATAAATAGAGTAAAAGACCTACCATTCCCTGCCTTTG 769
| |||||||||||||||| | | ||||||||||||||||||||||| | |||| ||||
Sbjct 864 AATGAAACCTCTGATGGATC-AGTTAAATAGAGTAAAAGACCTACCAATACCTGAATTTG 922
Query 770 AACCTTTTCCGGCATGGGAAGTTCGTGCTGCTAAGGCTGCTCGTGAAAATGGTGATCTTA 829
| |||||| ||||||||| | ||||| || | ||||||||| || |||||||||||||
Sbjct 923 GATCTTTTCTGGCATGGGAGGCCCGTGCAGCGATGGCTGCTCGCGAGAATGGTGATCTTA 982
Query 830 A-CTTAAATGATCCTTCAAGGTCACTGGGCGGGTATGGTTCAACACCAATGCCATTTCTG 888
| | | |||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 983 ACCCT-AATGATCCTTTGAGGTCACAGGGCGGGTATGGTTCAACACCAATGCCATTTCTC 1041
Query 889 GGAGAGACAAAGGTTGAGGTTAACCTTGGTGAAGGAAAAGAAGATGTCAAATCGAAAGGT 948
|||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| ||||||
Sbjct 1042 GGAGAGACAAAGGTTGAGGTTAACCTAGGTGATGGAAACGAAGATGTTAAATCTAAAGGT 1101
Query 949 GGAGATTCTAGTCTGAAAATGTTGCCTCCATGGATGATCAAGCAAGGCATGAATCTGACC 1008
||||| || ||||||||| | ||||||||||||||||||||| |||| ||||||||||||
Sbjct 1102 GGAGACTCCAGTCTGAAAGTCTTGCCTCCATGGATGATCAAGGAAGGAATGAATCTGACC 1161
Query 1009 GAGGAACAAAGAGGAGAGATGAGACAGGAAGCAAATGCTGATGG 1052
||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1162 GAGGAACAAAGAGGAGAGATGAGACAGGAAGCAAAGGTTGATGG 1205
Score = 233 bits (126), Expect = 3e-60
Identities = 258/319 (81%), Gaps = 20/319 (6%)
Strand=Plus/Plus
Query 1147 GATGAGTATCTCAAAGCTTACTACGCCG--CTATACTGGAGCAGCAAAAGCTTGCTGCAA 1204
|||||||||||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct 1282 GATGAGTATCTCAAAGCTTACTACGCCGAACT-TA-TGAAGCAGCAAGAGCTTGCTGCAA 1339
Query 1205 AACTGAA-TCAGCAAGAATCCGCAGGCGAATCAACAACCACTGACATTGAATCGGCTACT 1263
| ||| ||| ||||||||||| || ||| | |||| ||| |||| | |||| ||||
Sbjct 1340 GGC-GAAATCAACAAGAATCCGCTGGTGAA-C--CAACTTCTGGCATTCAGTCGGGTACT 1395
Query 1264 ACATCCTCAGATCGTCAGGTTGGTATGAAGTCCAAACGCGAAGAGGA--A-GA--A-GA- 1316
|| ||||| |||||||||| |||||||| ||||||| |||||||| | || | ||
Sbjct 1396 GTATACTCAGGTCGTCAGGTTAGTATGAAGGCCAAACGTGAAGAGGATGAAGACGAAGAT 1455
Query 1317 -A-GAAGATGTTGAATGGGAAGAACAAG-CTTCTGTGACAGCAAATGGAAACTACAAGGT 1373
| ||||| || |||||||||||| ||| || |||| || || ||||||||||| |||||
Sbjct 1456 GAAGAAGAAGTAGAATGGGAAGAA-AAGGCTCCTGTTACTGCTAATGGAAACTATAAGGT 1514
Query 1374 GGATTTGAATGTGgaagcagaagaggcagaagaaaaagaagaagaagaTGACGATGACAT 1433
||| ||||||||||||||||||| | | | ||||||||||||| || || ||| |
Sbjct 1515 GGACTTGAATGTGGAAGCAGAAGCTTCGGGTGGTGAAGAAGAAGAAGAGGAAGACGACGT 1574
Query 1434 CGATTGGGAAGAAGGCTGA 1452
|||||||||||||||||||
Sbjct 1575 CGATTGGGAAGAAGGCTGA 1593
> AT4G20810.1 | Symbols: | transcription initiation factor IIE
(TFIIE) alpha subunit family protein / general transcription
factor TFIIE family protein | chr4:11141427-11143597 REVERSE
LENGTH=1251
Length=1251
Score = 470 bits (254), Expect = 2e-131
Identities = 425/502 (85%), Gaps = 34/502 (7%)
Strand=Plus/Plus
Query 570 TTTTCATTGTGAAAATTGCAATGGTGAACTTGTTATGGAATGTAACAAACTAACTTCCGA 629
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 444 TTTTCATTGTGAAAATTGCAATGGTGAACTTGTTATGGAATGTAACAAGCTAACTTCCGA 503
Query 630 AGAAGTAGTAG-A--TGGAGGTGACAATGCAAGGAGACGGCAGCGGGAGAAAGTAAAAG- 685
||||||||||| | |||| |||||||| ||||||| |||| | || | | ||||||
Sbjct 504 AGAAGTAGTAGTAGATGGAAGTGACAATCCAAGGAGTCGGC-G-GG-ATCATCTAAAAGA 560
Query 686 TTTGGCTTCAGGATTTGGAGGTT-GAACTGAAACCTCTGATGGAAC-TAATAAATAGAGT 743
|||| |||||| || |||||||| || ||||||||||||||||| | || |||| ||| |
Sbjct 561 TTTG-CTTCAGAATATGGAGGTTCGA-CTGAAACCTCTGATGGATCATA-TAAACAGAAT 617
Query 744 AAAAGACCTACCA-TTCCCT-GCCTTTGAACCTTTTCCGGCATGGGA-AGTTCGTGCT-G 799
|||||||||||| |||| | || |||||| |||||||||||||||| | | |||| | |
Sbjct 618 AAAAGACCTACCGGTTCC-TAGC-TTTGAATCTTTTCCGGCATGGGAGACT-CGTG-TAG 673
Query 800 CTAAGGCTGCTCGTGAAAATGGTGATCTTAACT-TAAATGATCCTTCAAGGTCACTGGGC 858
||||||||||||||||||||||||| |||||| | | |||| ||| ||| ||| |||
Sbjct 674 CTAAGGCTGCTCGTGAAAATGGTGACCTTAACCCTGA-TGATACTTTGAGGCCACAGGGT 732
Query 859 GGGTATGGTTCAACACCAATGCCATTTCTGGGAGAGACAAAGGTTGAGGTTAACCTTGGT 918
||||||||||||||||| ||||||||||| ||||||||| || |||||||||||||||||
Sbjct 733 GGGTATGGTTCAACACCGATGCCATTTCTCGGAGAGACAGAGATTGAGGTTAACCTTGGT 792
Query 919 GAAGGAAAA-GAAGATGTCAAATC-GA--AAGGTGGAGATTCTAGTCT-GAA--AATGTT 971
|||| |||| |||||||||||||| || ||| |||||||||| ||| ||| || |
Sbjct 793 GAAG-AAAACGAAGATGTCAAATCTGATGAAGTTGGAGATTCT--TCTAGAAGGAAACTC 849
Query 972 --GCCTCCATGGATGATCAAGCAAGGCATGAATCTGACCGAGGAACAAAGAGGAGAGATG 1029
|||| ||||| |||||||| |||| ||||||||| |||| |||||||||||||| ||
Sbjct 850 ACGCCTTCATGGTTGATCAAGAAAGGAATGAATCTGTCCGATGAACAAAGAGGAGAAATA 909
Query 1030 AGACAGGAAGCAAATGCTGATG 1051
||||| |||||||| |||||||
Sbjct 910 AGACATGAAGCAAAGGCTGATG 931
Score = 252 bits (136), Expect = 8e-66
Identities = 224/261 (86%), Gaps = 27/261 (10%)
Strand=Plus/Plus
Query 1147 GATGAGTATCTCAAAGCTTACTACGCCGCTATACTGGAGCAGCAAAAGCTTGCTGCAAAA 1206
|||||||||||||||||||||||||| |||||||||||| ||||| |||| |||| ||||
Sbjct 979 GATGAGTATCTCAAAGCTTACTACGCGGCTATACTGGAGGAGCAAGAGCTAGCTG-AAAA 1037
Query 1207 -CTGAATCAGCAAGAATCCGCAGGCGAA-TCAACAACCACTGACATTGAATCGGCTACTA 1264
|||||||||||||||||||||||| || | |||||| ||||||||||| |||||||
Sbjct 1038 GCTGAATCAGCAAGAATCCGCAGGCAAAGT-AACAAC---TGACATTGAATTGGCTACTT 1093
Query 1265 CATCCTCAGATCGTCAGGTTGGTATGAAGTCCAAACGCGAAGAGGAAGAAGAAGAAGATG 1324
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1094 CATCCTCAGATCGTCAGGTTGGTATGAAGTCCAAACGTGAAGAGGAAGAAGAAGAAGA-- 1151
Query 1325 TTGAATGGGAAGAACAAGCTTCTGT-GACAGCAAATGGAAACTACAAGGTGGATTTGAAT 1383
| | | |||||| | ||||||||||||||||||||||||| ||||||
Sbjct 1152 ---A--G-------C----TTCTGTTG-CAGCAAATGGAAACTACAAGGTGGACTTGAAT 1194
Query 1384 GTGgaagcagaagaggcagaa 1404
|||||||||||||| ||||||
Sbjct 1195 GTGGAAGCAGAAGAAGCAGAA 1215
Score = 219 bits (118), Expect = 8e-56
Identities = 205/246 (83%), Gaps = 9/246 (4%)
Strand=Plus/Plus
Query 59 TGGTGAAGCTTTTAG-TAAGGATTTTCTATGACAATTATACTCCGGAAAGCGATAATCAG 117
||||||||||| ||| || | ||||||||| |||||||||||| ||| | ||||||||
Sbjct 2 TGGTGAAGCTTGTAGCGAA-AACTTTCTATGATAATTATACTCCGAAAAACAATAATCAG 60
Query 118 CAGAAATCTGCAAAAAATGTCA---GAGGGACTGCTGTTATCGTGCTGGACGCGCTTGCG 174
|||||||||||||||||| || |||| | ||| ||| | ||||||||||||||| |
Sbjct 61 AAGAAATCTGCAAAAAATGGCAGCGGAGGAATTGCCGTTTTGGTGCTGGACGCGCTTACA 120
Query 175 AGGCGGCAATGGGTTAGAGAAGAAGACTTGGCAAAAGAGTTGAAGCGGAATGCCAAGGAA 234
||||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||
Sbjct 121 AGGCGGCAATGGGTTCGAGAAGAAGACTTGGCAAAAGAGTTGAAGTTAAACACCAAGCAA 180
Query 235 CTTCGAAA-ATTAATAAGACATTTTGAAGAACAAAAATTTGTCATGCGT-TACCACAGGA 292
||||| | || | ||||| | |||||||||||| ||||| |||||||| | | ||||||
Sbjct 181 CTTCGTACGAT-ATTAAGATACTTTGAAGAACAACAATTTATCATGCGTGTTC-ACAGGA 238
Query 293 AAGAGA 298
||||||
Sbjct 239 AAGAGA 244
> AT5G48205.1 | Symbols: | zinc ion binding | chr5:19546937-19547787
REVERSE LENGTH=576
Length=576
Score = 56.5 bits (30), Expect = 7e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1309 GAAGAAGAAGAAGATGTTGAATGGGAAGAA 1338
||||||||||||||||||||||||||||||
Sbjct 541 GAAGAAGAAGAAGATGTTGAATGGGAAGAA 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71585977170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5