BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg354739 Length=3405 Score E Sequences producing significant alignments: (Bits) Value AT4G20060.1 | Symbols: EMB1895 | ARM repeat superfamily protein... 5022 0.0 > AT4G20060.1 | Symbols: EMB1895 | ARM repeat superfamily protein | chr4:10854790-10859330 REVERSE LENGTH=3405 Length=3405 Score = 5022 bits (2719), Expect = 0.0 Identities = 3187/3415 (93%), Gaps = 24/3415 (1%) Strand=Plus/Plus Query 1 ATGGAGAAGGTTTCAGCAGCTTGCGCCATGGAATGGAGCATCAAGCTCGAGAAATCTCTT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGAAGGTTTCAGCAGCTTGCGCCATGGAATGGAGCATCAAGCTCGAGAAATCTCTT 60 Query 61 CGTTCTAAAAACCCAGTTAAAGCTGTTGAAGCTATCTTAGAGACTGGTGAGAAGCTTGAA 120 |||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 61 CGTTCTAAAAACTCAGTTAAAGCCGTTGAAGCTATCTTAGAGACTGGTGGGAAGCTTGAA 120 Query 121 CAGTGGAGCAAAGAACAAGAATCTGCAATTGCTGTTTACAATTTATTTGGTTTGGTTCCT 180 |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 121 CAGTGGAGTAAAGAACCAGAATCTGCTATTGCTGTTTACAATTTATTTGGTTTGGTTCCT 180 Query 181 GAAGAAGATAAGCTCTTTTCAAATACTATCTTGTTGAGGCTAGTTGACGCGTTTTGTGTT 240 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 181 GAAGAAGATAAGCTCTTTTCAAATACTATCCTGTTGAGGCTTGTTGACGCGTTTTGTGTT 240 Query 241 GGGGATAAGCTTGTTAAGCTTGCTGTTGTTCGGGTTTTTATGTCTATGTTCAAGCTAAGC 300 |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 241 GGGGATAAGCTTATTAAGCTTGCTGTTGTTCGGGTTTTTATGTCTATGTTTAAGCTAAGC 300 Query 301 CGAGGGAATAACGTAAATGAGTCTGC-AGCTTGGTTTTTGTCAAAGGCTAGGGTGCATAA 359 |||||||| ||||||||||| || || || ||||||||||||||||| |||||||||||| Sbjct 301 CGAGGGAAGAACGTAAATGAATCAGCAAG-TTGGTTTTTGTCAAAGGGTAGGGTGCATAA 359 Query 360 CCACTTGGAGATT-CTTATACGAGTGAAGAATGTTTATGACAAGGGTGATACTGAGGCTA 418 ||||||||| ||| |||| ||||||||||||||| ||||| ||||||||||||||| ||| Sbjct 360 CCACTTGGA-ATTGCTTACACGAGTGAAGAATGTGTATGATAAGGGTGATACTGAGTCTA 418 Query 419 AAGCTTTGGCTTTGATTCTGTTTGGTTGTTGGAGAGATTTTGCCAGTGAATTTGCTCCCG 478 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | Sbjct 419 AAGCTTTGGCTTTGATTCTGTTTGGTTGTTGGAGAGATTTTGCTAGCGAATTTGCTCCTG 478 Query 479 TGCGGTACTTGATTTTCACCAGTATGGTTTCTTCACATGATCTGGAGGTAAGATCAGCTC 538 | ||||| ||| |||||| ||||||||||||| | ||||||||||||| ||||||||||| Sbjct 479 TACGGTATTTGGTTTTCAGCAGTATGGTTTCTCCTCATGATCTGGAGGGAAGATCAGCTC 538 Query 539 TGTTTGCAGCAGCTTGCTTTTGTGAAGTAGCAGATGACTTTGCTTTGGTTGTTTTGGGGA 598 ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 539 TGTTTGCTGCAGCTTGCTTTTGTGAAGTAGCAGATGACTTTGCATTGGTTGTTCTGGGGA 598 Query 599 TGTTAAATGACATGGTGAAGTTCCCAGAAATAATGCAAAAGACCAGGTTAGCTGCTGTGC 658 ||||||| |||||||||||||||||||| |||| || ||||||||||||||||||||||| Sbjct 599 TGTTAAACGACATGGTGAAGTTCCCAGACATAACGCCAAAGACCAGGTTAGCTGCTGTGC 658 Query 659 GAGTTTTTGCAAAAATGGGATGCTCGCATGCAATTGCTAATAGAGCATTCAAGATCTGTA 718 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 659 GAGTTTTTGCAAAAATGGGATGCTCGCATACAATTGCTAATAGAGCATTCAAGATTTGTA 718 Query 719 TGAAGCTAATGCTGGACTCCCCAAAAGAGGACAATTTGATTCCATTCCTGGTTTCATTGA 778 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 719 TGAAGCTAATGCTGGACTCCCCAAAAGAGGACAATTTGGTTCCATTCCTGGTTTCCTTGA 778 Query 779 CTAAGCTTGCTTCAAGATCTACTCATCTTGCTTCTGAACTGACAGAAGTTATCATGCCCT 838 ||||||||||||||||||| ||||||||||||||||||||| |||| |||||||| |||| Sbjct 779 CTAAGCTTGCTTCAAGATCAACTCATCTTGCTTCTGAACTGGCAGAGGTTATCATACCCT 838 Query 839 TTCTGAGTAAAGATAAGACTTCTCATG-TGCGAGCTGCGGTATTGAGATGTCTCCACTTT 897 ||||| || ||||||| |||||||||| | |||||||| ||||||||||||||||||||| Sbjct 839 TTCTGGGTGAAGATAAAACTTCTCATGCT-CGAGCTGCAGTATTGAGATGTCTCCACTTT 897 Query 898 CTCATAGAAAGAGGGATGTGCTTCTCTCTTGCCCATGAAATAGAAATTGCAAGTGTTTCA 957 |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 898 CTCATAGAAAGAGGGATGTGCTTCTCTCTTGCCCATGAAAGAGATATTGCAAGTGTTTCA 957 Query 958 AGCTTGCTAAAGCAAGAAGATCTCTCATCAGATATGCAACTTAAAGCTCTTCAAATTTTC 1017 ||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 958 AGCTTATTAAAGCAAGAAGAGCTCTCATCAGATATGCAAGTTAAAGCTCTTCAAATTTTT 1017 Query 1018 CAGAAGATACTTGTCTACAAACTATGCATGATTGATGCATTTGAATTACATCAGCTCATA 1077 ||||||||| ||||||||||||||||||||| |||||||| |||||||| |||||||||| Sbjct 1018 CAGAAGATAGTTGTCTACAAACTATGCATGACTGATGCATCTGAATTACTTCAGCTCATA 1077 Query 1078 GCTATTGTTGAGAATGCATCTCTTTCTCAGATCTTTTCAAGCAGTTGTTTAGCTATAAGT 1137 |||||| |||||||||||||| |||||||||||||||||||||||||||||| || ||| Sbjct 1078 GCTATTACTGAGAATGCATCTCATTCTCAGATCTTTTCAAGCAGTTGTTTAGCCATCAGT 1137 Query 1138 ATTTTGGTGGGTATATGGAAAGAAATAGAACGGACTGCAGAAATAAGATCAATCGAGGTT 1197 | |||||| ||||||||| |||||||| ||||| || |||| ||||||||| ||| | Sbjct 1138 GTCTTGGTGAGTATATGGACAGAAATAGTTCGGACAGCGGAAAAAAGATCAATTGAGATA 1197 Query 1198 TCTTCAACATCTCTGCCTCTGCAGCTCGTTGTATTAATCATGGACAGGGTCACCCTACTG 1257 |||||||||||||| || |||||||||||||||||||||||||||||||| || | ||| Sbjct 1198 TCTTCAACATCTCTTCCGATGCAGCTCGTTGTATTAATCATGGACAGGGTCGCCTTGCTG 1257 Query 1258 GGGCGATTATGTTGTGATCCTTTTCAAGCTGAAGATGCAGTAGTTAGTGACGTTCAAGAG 1317 ||||||||||||| ||||| ||||| ||||| |||| ||||||||||| |||||||| Sbjct 1258 GGGCGATTATGTTCTGATCTTTTTCGAGCTGGCTATGCTGTAGTTAGTGAGGTTCAAGAC 1317 Query 1318 CTCTTGAAGGTTCTCCACCTA-TATGTAGGAAAACATTCTGAACTGAGGCTGCTAGTTCT 1376 ||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| Sbjct 1318 CTCTTGAAGGTTCTCCACCTATTA-GTAGGAAAACATTCTGAACTGAGACTGCTAGTTCT 1376 Query 1377 TGAAAAAGTCAGATTATTCCTAGAGC-T-TATTGTGAACCTAAATGATGGCTTAAGAAAA 1434 ||||||||||||||||||| || | | | |||||||| |||||||||||||||||||||| Sbjct 1377 TGAAAAAGTCAGATTATTCTTA-A-CGTATATTGTGAGCCTAAATGATGGCTTAAGAAAA 1434 Query 1435 GCAGATGGAGCTCATGCATTGCTGTTTGGTGTTATCAATTATAAAGGCAAAAGAGGGGCG 1494 |||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| | Sbjct 1435 GCAGATGGAGCTCATGAATTGCTATTTGGTGTTATCAATTATAAAGACAAAAGAGGGGTG 1494 Query 1495 GTGATGAGGTCAGAGTTTCTAGCATCAATACACAAGTTCCTGATAGTGTTCTTGGAGAAT 1554 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1495 GTCATGAGGTCAGAGTTTCTAGCATCAATACACAAGTTCCTGATAGTGTTCTTGGAAAAT 1554 Query 1555 CTCGAGGGCA-ATGATAATCTTTTGTCTGAAATTTACGAAAAGGTGAAGCATATCACTGA 1613 |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1555 CTCGAGGG-AGATGATAATCTTTTGTCTGAAATTTATGAAAAGGTGAAGCATATCACTGA 1613 Query 1614 GTTTGTACGTTCATGCAGCTTCATTGATTTCCACACACAAATGATATTTACACTGCTATT 1673 ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 1614 GTTTGTAAGTTCATGCAGCTTCATTGATTTCCACACACAAATGATATTCACACTGCTACT 1673 Query 1674 ACATTCGCCGATTCTTTGGGGATTCTCTGTGAATGATGATGCAGGAAATTCAGGCGTCTC 1733 |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 1674 ACATTCCCCGATTCTTTGGGGATTCTCTGTGAATGATGATACAGGAAATTCAGGCGTATC 1733 Query 1734 ACTTGTTGCTGATATAGTTAACTATGGAATCGTTTCTCTTGACTGTTCAAATCAGATTTT 1793 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1734 ACTTGTTGCTGATATAGTTAACTATGGAATCGTTTCTCTTGACTGTTCAAATCAGATTTT 1793 Query 1794 AATGGAGAGAAACTATTGGCCTGCCTACAGAGCTGGAGTTTACGCAGCACGTTTGGGTGC 1853 ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1794 AATGGAGAGAAACTACTGGCCTGCTTACAGAGCTGGGGTTTACGCAGCACGTTTGGGTGC 1853 Query 1854 TTGGGTCATATCTGCTATGATTTTTGACCAGCTGAAAACCAACGTCCAGTCTGATATTAA 1913 |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1854 TTGGGTCACATCTGCTATGATTTTTGACCAGCTCAAAACCAACGTCCAGTCTGATATTAA 1913 Query 1914 CTGTTGCTGGTTAAAGTCATTAACCTATTTATCCCATGCCGAGGGAAAATTCCAACTGCT 1973 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1914 TTGTTGCTGGTTAAAGTCATTAACCTATTTATCCCATGCCGAGGGAAAATTCCAACTGCT 1973 Query 1974 TCTCACTCCTAGTGATAGTGTCAAATTAGTCAATTGGCTGAAAAGTAACTG-TTATTTAC 2032 ||||||||| |||||||||||||| ||||||||||||||||||| ||| || |||||||| Sbjct 1974 TCTCACTCCAAGTGATAGTGTCAAGTTAGTCAATTGGCTGAAAAATAA-TGGTTATTTAC 2032 Query 2033 CAGAACTGTCCAAAGATGCATCTGGAGAGTTTGCACACTGTCTAGCTCTTCATGAAGCTT 2092 ||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 2033 CAGAACTCTCCAAAGATGCCTCTGGAGAGTTTGCACACTGTCTAGCTCTTCGTGAAGCTT 2092 Query 2093 ATATGAATTTACAATCGTCACTGGGAATGATGGGAAATATTATAGCATCAAG-GGAAGTG 2151 ||||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||| || Sbjct 2093 ATATGAATTTACAATCGTCTCTGGGAATGTTGGGAAATATTATAGCGTCAAGTGGA-GTA 2151 Query 2152 TTTTGTTTCCAAACGTGGCTCTTGGTACTAAAGACTCGGTTACTTG-AAACCGTGCTTGA 2210 || ||||||||||||||| ||||||| |||||||||||| || ||| ||||||||||||| Sbjct 2152 TTCTGTTTCCAAACGTGGTTCTTGGTTCTAAAGACTCGGGTA-TTGGAAACCGTGCTTGA 2210 Query 2211 ACTCGTCGAATGCCTCGGGCTGCTTGATCAAGATATCCACAACAAGAAGCAGGTGGAGGA 2270 ||||||||||||||| ||||||||| | |||||| | | ||||||||| |||||||| || Sbjct 2211 ACTCGTCGAATGCCTTGGGCTGCTTAACCAAGATTTACGCAACAAGAATCAGGTGGAAGA 2270 Query 2271 AA-AGATCTCGACTGGTTGCAATTCCCTGCAACAGCTTCCTCAGATTTCTATTCAGCTAC 2329 || | ||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 2271 AATAC-TCTTGACTGGTTGCGATTCCCTGCAACAGCTTCCTCGGATTTCTATTCAGCTAC 2329 Query 2330 AAAAGTTGGCAAAGGAATTTGATATGTTAGCGACATGTTTTATAGACATAGACGATAGCA 2389 |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| Sbjct 2330 AAAAGTTGGCAAAGGAATTTGATATGTTGGCGACGTGTTTCATAGACATAGACGATAGCA 2389 Query 2390 GTTCTAGCATTATCACGACATTTTCACTGAGCTGTTCAGTTCTGGCTTTTGCTGCTGGAA 2449 |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2390 GTTCTAGCATTATCACAACAATTTCACTGAGCTGTTCAGTTCTGGCTTTTGCTGCTGGAA 2449 Query 2450 TTGTTCTTTTCCTACCAAGTTTTTCTTTTCATCAAGCGTTGGTTCCTTTCACTTCACAAA 2509 ||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||| Sbjct 2450 TTGTTCTTTTCCTTCCAGGTTTTTCTTTTCAAGAAGCATTGGTTCCTTTCACTTCACAAA 2509 Query 2510 GTGGTCTGTGCTCGAGGCTTGTACAAGATTTAGTTCGGCGGCTGTGGAAAGTGGACCCTG 2569 | ||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| Sbjct 2510 GCGGTCTGTGCTCGAGGCTTGTAGAAGATTTAGTTCGACGGCTGTGGAAAGTAGACCCC- 2568 Query 2570 AAA-TCTGCAAAAAGCTCAACATACTCGTTAAGACAAACGAATCATTTAACTGTCTCCAC 2628 || ||||| |||||||||||||||||||||| |||||||| || || |||||| |||| Sbjct 2569 AATGTCTGCGAAAAGCTCAACATACTCGTTAACACAAACGAGTCGTTAAACTGTTTCCAT 2628 Query 2629 TTGCAACCTAGGAATCAGGTATTGAGAGTCTGTGGCAAAGTGAAGATGTTGCTCTCTATT 2688 |||||| ||||||||||||| |||||||||||||||||||| |||||| ||||||||||| Sbjct 2629 TTGCAATCTAGGAATCAGGTTTTGAGAGTCTGTGGCAAAGTAAAGATGCTGCTCTCTATT 2688 Query 2689 TGCAGAGACGCTCTTTCCTGCATTTATGGATTGCAGAATCAGTCAATGTCAATGCACAAA 2748 |||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 2689 TGCAGAGATGCTCTTTCATGCACTTATGGATTGCAGAATCAGTCAATGTCAATGCACAAA 2748 Query 2749 GAGGAGATTATGTCTGAGATTACTAAAAGTTGCAGGAATCTACTGTCACAAGCAATTATG 2808 ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 2749 GAGGAGATTATGTCTGAGATTACGAAAAGTTGCAGGCATCTACTGTCACAAGCAATTATG 2808 Query 2809 AAATGGATGCAGATTCCTTTTGGCATTCCAAAGTATTTCTTCAACATAAGGCCTTGTGTT 2868 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2809 AAATGGATGCAGATTCCTTTTGGTATTCCAAAGTATTTCTTCAACATAAGGCCTTGTGTT 2868 Query 2869 GGTGTTGAGCTATTTGCTCTTAGTTCAGCGAGTAGCAAACGTACTCCTGATACAGTTTCG 2928 |||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||| Sbjct 2869 GGTGCCGAGCTATTTGCTCTTAGTTCAGAGAGTAGCAAACGTATTCCTGACACAGTTTCA 2928 Query 2929 GTGGAACAAGGCTTTCAACTGTCACTAGATCTTTGTCTTCAGTTGAAAAACGCACAACAA 2988 ||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 2929 GTGGAACAAGGGTTTCAACTGTCACTAGATCTTTGTCTTCAGTTGAAAAACATAAAACAA 2988 Query 2989 CAGCAAGTCCCTGTTCGACTTAACAAACTGTATTGCCTTCTCTATACTAAACTAGCTTAT 3048 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2989 CGGCAAGTCCCTGTTCGACTTAACAAACTGTATTGCCTTCTCTATACTAAACTAGCTTAT 3048 Query 3049 CACACTCCAACTCAACACGGTGAAACCAACAGAAACCAAAAGTCTTATACCCCATGGAGA 3108 || ||||||||||||||||||||| |||||||||||||| ||||||| |||| |||||| Sbjct 3049 CATTCTCCAACTCAACACGGTGAAAACAACAGAAACCAAATGTCTTATTCCCCTTGGAGA 3108 Query 3109 GATGAAGATCTGGTAGAAATGAGTAACAAGCTATTTCATCATGCTATAAAGTCTGGTAAG 3168 |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 3109 GATGAAGATCTGATTGAAATGAGTAACAAGCTGTTTCATCATGCTATAAAGTCTGGTAAG 3168 Query 3169 AAGCCGGAAGTTTCAGGTCGATTTGATTGGACCAAGAGTGGTGTTTCTACGGTTGTGGAG 3228 |||||||| || |||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 3169 AAGCCGGACGTCTCAGGTCGATTTGATTGGGCCAAGAGTGGTGTTTCTACGGTTGTGCAG 3228 Query 3229 TTCGAACCAAACGAGAGAGGACAAGGGTTTTCAAGCTGCTTGCTAGACGTTTCGCGTTTC 3288 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 3229 TTCGAACCAAACGAGAGAGGACAAGGGTTTTCAAGCTGCTTGTTAGACGTTTCGCGTTTC 3288 Query 3289 CCAGTTGGTTCATATCAAATAAAATGGCTAAGCTGCTGCACTGATCAACATGGTTCTTAC 3348 || |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 3289 CCGGTTGGTTCATATCAAATAAAATGGCTAAGCTGTTGCGTTGATCAACATGGTTCTTAC 3348 Query 3349 TGGATTCTTCTACCTCTCAATGGCAAACCTGTGTTTACCATTAAGAAAGCTTCAT 3403 |||| ||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 3349 TGGAATCTTCTACCTCTCAATGGCAAACCTGTGTTTACGGTTAAGAAAGCGTCAT 3403 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 169463933454 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5