BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg354810

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G19400.1 | Symbols:  | Profilin family protein | chr4:105808...   721    0.0  


> AT4G19400.1 | Symbols:  | Profilin family protein | chr4:10580827-10581989 
REVERSE LENGTH=737
Length=737

 Score =  721 bits (390),  Expect = 0.0
 Identities = 429/448 (96%), Gaps = 2/448 (0%)
 Strand=Plus/Plus

Query  1    ATGGATTCGGCGTTTGTGGACAGAGCTTGGGACAAATGGGTTACTTCGGGTAACGTTGGC  60
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct  81   ATGGATTCGGCGTTTGTGGACAGAGCTTGGGACAAATGGGTTACTACGGGTAACGTTGGT  140

Query  61   TCTTCAGGCAATCCATTGAAGGCTGCTATTTTGATTAACTATGATCCTACAGGACCTTCT  120
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  141  TCTTCAGGTAATCCATTGAAGGCTGCTATTTTGATTAACTATGATCCTACAGGACCTTCT  200

Query  121  CGTCTCTTATCAACAATAGCTGAACAAGAAGGGATTGATATCTATCCAGTTGATCTAAAG  180
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  201  CGTCTCTTATCAACAATAGCTAAACAAGAAGGGATTGATATCTATCCAGTTGATCTAAAG  260

Query  181  CAATTCATCGATTTCATGAGACGTGGCAATCTTCCTACTGAGACCTTTGTTCTTGGATCC  240
            ||||| || |||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct  261  CAATTTATAGATTTCATGAGATGTGGCAATCTTCCTACTGAGACTTTTGTTCTTGGATCC  320

Query  241  AATCAATACATTATAACATCAATTCATGAGAATTGGTTCGCTGCTCGGTGTTTAAACACT  300
            || |||||||| |||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct  321  AACCAATACATAATAACATCTATTCATGAGAACTGGTTCGCTGCTAGGTGTTTAAACACT  380

Query  301  TCCCAGCCTACTGGTGAAGGAGCTATTGTTATGCAGACTGCGGTTTACGTGTTGGTTGCT  360
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  381  TCCCAGCCTGCTGGTGAAGGAGCTATTGTTATGCAGACTGCGGTTTACGTGTTGGTTGCT  440

Query  361  TTATATGATGGATCAATTGGTTCAGCTTCTCAAGCTGTGGCTGCAGCTGATCAGTTTGCG  420
             ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct  441  CTATATGATGGATCAATTGGTTCAGCTTCTCAAGCTATGGCTGCAGCTGATCAGTTTGCA  500

Query  421  TCGCAGCTGAGTCG-AAAGAACTTCTAG  447
            |||||||||||||| ||| |||||||||
Sbjct  501  TCGCAGCTGAGTCGGAAA-AACTTCTAG  527



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21263257827


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5