BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355148
Length=2772
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16150.1 | Symbols: | calmodulin binding;transcription regu... 4560 0.0
AT3G16940.1 | Symbols: | calmodulin binding;transcription regu... 1144 0.0
AT5G05435.1 | Symbols: | other RNA | chr5:1606552-1607656 FORW... 91.6 4e-17
> AT4G16150.1 | Symbols: | calmodulin binding;transcription regulators
| chr4:9148059-9153292 FORWARD LENGTH=3182
Length=3182
Score = 4560 bits (2469), Expect = 0.0
Identities = 2671/2772 (96%), Gaps = 0/2772 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGGTGTTGATTCCGGCAGGCTTATCGGCTCTGAGATTCATGGATTCCATACTTTA 60
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 167 ATGGCCGGCGTTGATTCCGGCAAGCTTATCGGCTCTGAGATTCATGGATTCCATACTTTA 226
Query 61 CAAGATCTAGATATACAAACAATGTTGGATGAAGCATACAGTAGGTGGCTCCGGCCTAAT 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 227 CAAGATCTAGATATACAAACAATGTTAGATGAAGCATACAGTAGGTGGCTCCGTCCTAAT 286
Query 121 GAGATCCATGCTCTCCTCTGTAACCATAAATTCTTCACCATCAACGTCAAGCCTGTGAAT 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 GAGATCCATGCTCTTCTCTGTAACCATAAATTCTTCACCATCAACGTCAAGCCTGTGAAC 346
Query 181 TTACCCAAAAGTGGTACGATTGTGTTGTTTGATCGTAAGATGTTGAGAAACTTTAGAAAG 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 347 TTACCCAAAAGTGGTACGATTGTGTTGTTTGATCGTAAGATGTTGAGGAACTTTAGAAAG 406
Query 241 GATGGTCATAACTGGAAAAAGAAAAAGGATGGAAAGACAATTAAGGAAGCTCATGAACAC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 GATGGTCATAACTGGAAAAAGAAAAAGGATGGAAAGACAATTAAGGAAGCTCATGAACAT 466
Query 301 CTGAAAGTCGGTAATGAGGAAAGGATTCATGTTTACTATGCGCATGGTGAGGATACCCCT 360
|| ||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 467 CTAAAAGTTGGTAATGAGGAAAGGATTCATGTTTATTATGCCCACGGTGAGGATACCCCT 526
Query 361 ACATTTGTGCGAAGGTGTTACTGGTTATTGGATAAGTCTCAGGAGCACATAGTTCTTGTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 ACATTTGTGCGAAGGTGTTACTGGTTATTGGATAAGTCTCAGGAGCACATAGTTCTTGTC 586
Query 421 CACTATCGTGAGACACATGAGGTTCAGGCAGCTCCAGCAACACCTGGGAATTCGTACTCA 480
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 587 CACTATCGCGAGACACATGAGGTTCATGCAGCTCCAGCAACACCTGGGAACTCGTACTCA 646
Query 481 AGTTCAATCACTGACCACTTATCTCCTATAATTGTGGCTGAAGATACCAGTTCTGGTGTC 540
||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 647 AGTTCGATCACTGACCACTTATCTCCTAAAATTGTAGCTGAAGATACCAGTTCTGGTGTC 706
Query 541 CATAATGCTTGTAATACAGGGTTTGAAGTGCGCAGCAACAGTCTGGGTTCTAGAAATCAT 600
|||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 707 CATAATACTTGTAATACAGGTTTTGAAGTGCGGAGCAACAGTCTGGGTTCTAGAAATCAT 766
Query 601 GAGATTAGGCTTCATGAGATCAACACACTTGATTGGGATGAGCTTCTAGTACCAGCAGAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 767 GAGATTAGGCTTCATGAGATCAACACACTTGATTGGGATGAGCTTCTAGTACCTGCAGAT 826
Query 661 ATTAGCAACCAGTCTCATCCAACCGAAGAAGATATGCTATACTTCACAGAACAGCTCCAA 720
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 ATTAGCAACCAATCTCATCCAACCGAAGAAGATATGCTATACTTCACAGAACAGCTCCAA 886
Query 721 ACTGCACCCAGGGGATCTGCAAAGCAAGGAAATCACCTTGCAGGCTACAACGGATCAGTA 780
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 887 ACTGCACCCAGGGGATCTGTAAAGCAAGGAAATCACCTTGCAGGCTACAACGGATCAGTA 946
Query 781 GATATACCATCATTCCCCGGTCTTGAAGATCCTGTTTATCAAAATAATAACTCATGTGGT 840
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 947 GATATACCATCATTCCCGGGTCTTGAAGATCCTGTATATCAAAATAATAACTCATGTGGT 1006
Query 841 GCAGGAGAATTTTCTAGTCAGCATTCGCACTGTGGAGTAGATCCAAATCTACAGAGACGG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1007 GCAGGAGAATTTTCTAGTCAGCATTCGCACTGTGGAGTAGATCCAAATCTACAGAGAAGG 1066
Query 901 GATTCCATTGCAACAGGTACTGATCAACCAGGTGATGCTTTGCTTAATAACGGTTATGGA 960
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 GATTTCAGTGCAACAGTTACTGATCAACCAGGTGATGCTTTGCTTAATAACGGTTATGGA 1126
Query 961 AGTCAGGATAGTTTTGGAAGGTGGGTGAACAACTTCATTAGTGACTCTCCTGGTTCCGTC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 AGTCAGGATAGTTTTGGAAGGTGGGTGAACAACTTCATTAGTGACTCTCCTGGTTCCGTC 1186
Query 1021 GATGATCCTTCCCTTGAAGCTGTATATACACCTGGGCAGGATTCATCTACTCCTCCTACT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 GATGATCCTTCCCTTGAAGCTGTATATACACCTGGGCAGGATTCATCTACTCCTCCTACT 1246
Query 1081 GTATTTCCTTCTCATTCTGACATACCGGAGCAAGTATTCAACATAACTGATGTTTCACCT 1140
||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 GTATTTCATTCCCACTCTGACATACCGGAGCAAGTATTCAACATAACTGATGTTTCACCT 1306
Query 1141 GCCTGGGCCTACTCGACAGAGAAAACAAAGATTCTTGTAACTGGGTTCTTTCACGACAGC 1200
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 GCCTGGGCGTATTCGACAGAGAAAACAAAGATTCTTGTAACTGGGTTCTTTCACGACAGC 1366
Query 1201 TTCCAACATTTTGGAAGATCAAACCTCTTCTGCATATGTGGAGAGTTGCGTGTCACCGCA 1260
||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1367 TTCCAACATTTGGGAAGATCAAACCTCATCTGCATATGTGGAGAGTTGCGTGTCCCCGCC 1426
Query 1261 GAATTTCTCCAGATGGGGGTTTATCGTTGCTTCCTTCCCCCTCAATCTCCTGGGGTTGTG 1320
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1427 GAATTTCTCCAGATGGGGGTTTATCGTTGCTTCCTTCCTCCTCAATCTCCTGGGGTGGTG 1486
Query 1321 AACCTATATCTGAGTGTCGATGGAAACAAACCGATCAGCCAATCGTTCAGCTTCGAACAC 1380
||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1487 AACCTTTATCTTAGTGTCGATGGAAACAAACCGATCAGCCAATTGTTCAGCTTCGAACAC 1546
Query 1381 CGCTCAGTTCAGTTTATTGAAAAAGCCATCCCTCAAGATGACCAGCTATACAAGTGGGAA 1440
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1547 CGCTCAGTTCAGTTTATCGAAAAAGCCATCCCTCAAGACGACCAGCTATACAAGTGGGAA 1606
Query 1441 GAATTTGAATTCCAAGTCAGACTTGCTCATCTTCTGTTCACTTCTTCGAACAAAATCAGC 1500
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 GAATTTGAGTTCCAAGTCAGACTTGCTCATCTTCTGTTCACTTCTTCGAACAAAATCAGC 1666
Query 1501 ATTTTAACAAGTAAAATCTCACCTGATAACCTGCTAGAGGCTAAGAAACTCGCCAGCAGG 1560
||||||| |||||||| |||||||| ||||| || ||||||||||||||||||||||||
Sbjct 1667 GTTTTAACTAGTAAAATATCACCTGAAAACCTTCTTGAGGCTAAGAAACTCGCCAGCAGG 1726
Query 1561 ACTTCCCATCTCTTAAATAGTTGGGCTTATTTAATGAAGTCAATCCAAGCAAATGAGGTG 1620
||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1727 ACTTCGCATCTCTTAAATAGTTGGGCTTATTTAATGAAGTCAATTCAGGCAAATGAGGTA 1786
Query 1621 CCGTTTGATCAAGCGAGAGACCATCTCTTTGAGCTTACTCTGAAAAATAGGCTGAAAGAG 1680
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 CCGTTTGATCAAGCGAGGGACCATCTCTTTGAGCTTACTCTGAAAAATAGGCTGAAAGAG 1846
Query 1681 TGGCTTTTGGAGAAGGTCATCGAAAACCGCAACACTAAGGAATATGACTCTAAAGGCCTT 1740
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1847 TGGCTTTTGGAGAAGGTCATCGAAAACCGCAACACTAAGGAATATGACTCTAAAGGGCTT 1906
Query 1741 GGAGTGATCCACCTTTGCGCCGTCCTAGGATACACTTGGTCAATCCTTCTATTCTCATGG 1800
|||||||||||||| || |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1907 GGAGTGATCCACCTCTGTGCCGTCCTAGGATACACTTGGTCAATCCTTCTCTTCTCCTGG 1966
Query 1801 GCAAATATATCGTTGGATTTCCGTGATAAGCAGGGTTGGACTGCTCTTCATTGGGCAGCA 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 GCAAATATATCGTTGGATTTCCGTGATAAGCAGGGTTGGACTGCTCTTCATTGGGCAGCA 2026
Query 1861 TACTATGGAAGGGAGAAAATGGTGGCTGCTCTACTATCTGCCGGGGCAAGGCCAAACCTG 1920
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2027 TACTATGGAAGGGAGAAAATGGTGGCTGCTCTTCTATCTGCGGGGGCAAGGCCAAACCTG 2086
Query 1921 GTGACAGACCCGACTAAGGAATTCCTCGGCGGCTGCACGGCAGCTGATCTGGCACAGCAG 1980
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2087 GTGACAGACCCTACTAAGGAATTCCTCGGCGGCTGCACGGCAGCTGATCTGGCACAACAG 2146
Query 1981 AAAGGTTATGACGGTTTAGCAGCTTTTCTTGCTGAGAAATGTCTTCTAGCACAGTTCAAG 2040
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2147 AAAGGTTATGACGGTTTAGCAGCTTTTCTTGCTGAGAAATGTCTTGTAGCACAGTTCAAG 2206
Query 2041 GACATGGAAATGGCTGGAAACATCAGTGGCAAACTTGAAACCATCAAGGCAGAGAAGTCA 2100
|||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2207 GACATGCAAACGGCTGGAAACATTAGTGGCAACCTTGAAACCATCAAGGCAGAGAAGTCG 2266
Query 2101 TCGAATCCAGGGAATGCAAATGAAGAGGAGCAGAGCCTGAAGGACACTCTGGCGGCATAC 2160
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 2267 TCAAATCCAGGGAATGCAAATGAAGAGGAGCAAAGCCTGAAGGACACTCTAGCGGCATAC 2326
Query 2161 AGAACTGCTGCAGAGGCAGCGGCGCGTATTCAGGGAGCGTTCAGGGAGCACGAGCTGAAA 2220
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2327 AGAACTGCTGCAGAGGCAGCGGCGCGGATTCAGGGAGCGTTCAGGGAGCACGAGCTGAAA 2386
Query 2221 GTTAGGTCAAGCGCCGTTAGGTTTGCTAGCAAGGAAGAAGAAGCCAAAAACATAATTGCC 2280
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2387 GTTAGGTCAAGCGCAGTTAGGTTTGCTAGCAAGGAAGAAGAAGCCAAAAACATAATAGCC 2446
Query 2281 GCGATGAAGATTCAGCACGCGTTTCGCAATTTCGAGGTTCGTAGGAAGATTGCAGCTGCT 2340
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2447 GCGATGAAGATTCAGCACGCGTTTCGCAATTTCGAGGTTCGTAGGAAGATTGCAGCCGCT 2506
Query 2341 GCTCGGATTCAGTACAGGTTCCAAACATGGAAAATGAGGCGGGAGTTTTTGAACATGCGG 2400
|||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 2507 GCTCGGATTCAGTATAGGTTCCAAACATGGAAAATGAGGCGGGAATTTCTGAACATGCGA 2566
Query 2401 AATAAGGCAATTAGGATCCAGGCTGTGTTTAGAGGGTTCCAAGTAAGAAGACAGTACCAG 2460
|| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 2567 AAGAAGGCAATTAGGATCCAGGCTGCGTTTAGAGGTTTCCAAGTAAGAAGACAGTACCAG 2626
Query 2461 AAAATAACATGGTCGGTGGGAGTTCTTGAGAAGGCGATTCTGAGATGGAGACTGAAGAGA 2520
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2627 AAAATAACATGGTCAGTGGGAGTTCTTGAGAAGGCAATTCTGAGATGGAGACTGAAGAGA 2686
Query 2521 AAAGGTTTCAGAGGGCTTCAGGTTAGGCAACCTGAGGAGAAGGAAGGAAGTGAGGCGGTG 2580
||||| |||||||| |||||||| || |||||||| ||||||||||| ||||||||||||
Sbjct 2687 AAAGGATTCAGAGGCCTTCAGGTAAGTCAACCTGACGAGAAGGAAGGGAGTGAGGCGGTG 2746
Query 2581 GAGGATTTCTACAAGACAAGCCAGAAACAAGCAGAGGAACGGCTCGAGAGGTCAGTGGTT 2640
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2747 GAGGATTTCTACAAGACAAGCCAGAAACAAGCGGAGGAACGGCTTGAGAGGTCAGTGGTT 2806
Query 2641 AAAGTCCAGGCCATGTTCCGGTCCAAGAAGGCTCAGCAAGATTACAGAAGGATGAAACTG 2700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2807 AAAGTCCAGGCCATGTTCCGGTCCAAGAAGGCTCAGCAAGATTACAGAAGGATGAAACTG 2866
Query 2701 GCTCATGAAGAAGCTCAGCTGGAGTATGATGGGATGAAAGAACTTGAGCAAATGGCTATG 2760
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
Sbjct 2867 GCTCATGAAGAAGCTCAGCTGGAGTATGATGGGATGCAAGAACTTGATCAAATGGCTACG 2926
Query 2761 GAGGAGAGCTGA 2772
||||||||||||
Sbjct 2927 GAGGAGAGCTGA 2938
> AT3G16940.1 | Symbols: | calmodulin binding;transcription regulators
| chr3:5781775-5786280 FORWARD LENGTH=3017
Length=3017
Score = 1144 bits (619), Expect = 0.0
Identities = 1451/1842 (79%), Gaps = 99/1842 (5%)
Strand=Plus/Plus
Query 933 TGATGCTTTGCTTAATAACGGT-TATGGAAGTCAG-GATAGTTTTGGAAGGTGGGTGAAC 990
||||||||||||||| | ||| | ||||| | || ||||||||||||||| ||||
Sbjct 910 TGATGCTTTGCTTAACGATGGTCCA-CAAAGTC-GAGAGAGTTTTGGAAGGTGGATGAA- 966
Query 991 AAC-TTCATTAGTGACTCTCCTGGTTC-CGTCGATGATCCTTCCCTTGAA-GC-T-GTAT 1045
| || || || || ||| ||| || | | || ||||||||| ||||| | | || |
Sbjct 967 TTCATTTATCAGCGAATCTAATGGCTCAC-TGGAGGATCCTTCCTTTGAACCCATGGT-T 1024
Query 1046 ATACACCTGGGCAGGATTCATCTA-CTCCTCCTA-CTGTATTTCCTTCTCATTCTGACAT 1103
|| ||| |||||||| ||| || ||||| | | ||||||||| |||||| ||| ||||
Sbjct 1025 AT--GCCTAGGCAGGATCCAT-TAGCTCCT-CAAGCTGTATTTCATTCTCACTCTAACAT 1080
Query 1104 ACCGGAGCAAGTATTCAACATAACTGATGTTTCACCTGCCTGGGCCTACTCGACAGAGAA 1163
||| |||||||| || |||||||| |||||||||||||| |||||||| || | |||||
Sbjct 1081 ACCTGAGCAAGTGTTTAACATAACCGATGTTTCACCTGCTTGGGCCTATTCTTCCGAGAA 1140
Query 1164 AACAAAGATTCTTGTAACTGGGTTCTTTCACGACAGCTT-CCAACATTTTGGAAGATCAA 1222
||| |||||||| |||||||||||||| || ||||| || |||||| | | ||||||||
Sbjct 1141 AACTAAGATTCTGGTAACTGGGTTCTTGCATGACAG-TTATCAACATCTCGAAAGATCAA 1199
Query 1223 ACCTCTT-CTGCATATGTGGAGAGTTGCGTGTCACC-GCAGAATTTCTCCA-GATGGGGG 1279
|||| || ||| | || || || || ||||| || || |||| |||||| | | || |
Sbjct 1200 ACCT-TTATTGCGTTTGCGGTGACTTTTGTGTC-CCTGCGGAATATCTCCAGGCT-GGAG 1256
Query 1280 TTTATCGTTGCTTCCTTCCCCCTCAATCTCCTGGGGTTGTGAACCTATATCTGAGTGTC- 1338
| || |||||| || | || || || || ||||| | || ||||| ||||| |||| |
Sbjct 1257 TCTACCGTTGCATCATACCTCCACACTCGCCTGGTATGGTAAACCTCTATCTTAGTG-CA 1315
Query 1339 GATGGAAACAAACCGATCAGCCAATCG-TTCAGCTTCGAACACCGCT-CAGT-TCAGTTT 1395
|||||| ||||||| |||||||||| | ||||| ||||||||||| | |||| ||| ||
Sbjct 1316 GATGGACACAAACCAATCAGCCAAT-GTTTCAGATTCGAACACCG-TGCAGTCCCAG-TT 1372
Query 1396 ATTGAAAAAG-CCATCCCTCAAGATGA-CCAGCTATACAAGTGGGAAGAATTTGAATTCC 1453
||| | ||| || ||||| |||| | | || | | ||| |||||||| ||||| ||||
Sbjct 1373 CTTG-ATAAGACCGTCCCTGAAGACAATCAAGAT-TCCAAATGGGAAGAGTTTGAGTTCC 1430
Query 1454 AAG-TCAGACTTGCTCATCTTCTGTTCACTTCTTCGAACAAAATCAGCATTTTAACAAGT 1512
||| || ||||| ||||||||||||| || ||||| |||||| ||| | || | | ||
Sbjct 1431 AAGTTC-GACTTTCTCATCTTCTGTTTACGTCTTCCAACAAACTCAACGTTCTCTCCAGC 1489
Query 1513 AAAATCTCACCTGATAACCTGCTAGAGGCTAAGAAACTCGCCAGCAGGACTTCCCATCTC 1572
|||||||||||| ||||||||| ||| ||||| |||||||| |||| || ||||||
Sbjct 1490 AAAATCTCACCTCATAACCTGCGAGATGCTAAAAAACTCGCTAGCAAAACAAATCATCTC 1549
Query 1573 TTAAATAGTTGGGCTTATTTAATGAAGTCAATCCAAGCAAATGAGGTGCCGTTTGATCAA 1632
||||| |||||||||||| || | ||||| ||||| | ||| |||| |||||||||||
Sbjct 1550 TTAAACAGTTGGGCTTATCTAGTCAAGTCCATCCAGGGGAATAAGGTATCGTTTGATCAA 1609
Query 1633 GCGAGAGACCATCTCTTTGAGCTTACTCTGAAAAATAGGCTGAAAGAGTGGCTTTTGGAG 1692
|||| ||| |||||||| |||||| ||||||| || ||||| || || |||||| |||||
Sbjct 1610 GCGAAAGATCATCTCTTCGAGCTTTCTCTGAAGAACAGGCTTAAGGAATGGCTTATGGAG 1669
Query 1693 AAGGT-CATCGAAAACCGCAACACTA-AGGAATATGACTCTAAAGGCCTTGGAGTGATCC 1750
|| || | | ||| |||||||| | ||| ||||| ||||||||||| || |||||||
Sbjct 1670 AAAGTGC-TTGAAGGTCGCAACAC-ATTGGATTATGATTCTAAAGGCCTCGGCGTGATCC 1727
Query 1751 ACCTTTGCGCC-GTCCTAGGATACACTTGGTCAATCCTTCTATTCTCATGGGCA-AATAT 1808
|||| || ||| || || ||||||||||||||| ||| || ||||||| | || | |
Sbjct 1728 ACCTCTGTGCCAGT-CTTGGATACACTTGGTCAGTCCAGCTGTTCTCATTGTCAGGCT-T 1785
Query 1809 ATCGTTGGATTTCCGTGATAAGC-AGGGTTGGACTGCTCTTCATTGGGCAGCATACTATG 1867
||||||| ||||||||||||| | |||| ||||||||||||||||||||||||||||| |
Sbjct 1786 ATCGTTGAATTTCCGTGATAAACAAGGG-TGGACTGCTCTTCATTGGGCAGCATACTACG 1844
Query 1868 GAAGGGAGAAAATGGTGGCTGCTCTACTATCTGCCGGGGCAAGGCCAAACCTGGTGACAG 1927
||||||||||||||||||||||||| || ||||| |||||||| || |||||||||||||
Sbjct 1845 GAAGGGAGAAAATGGTGGCTGCTCTTCTCTCTGCTGGGGCAAGACCGAACCTGGTGACAG 1904
Query 1928 ACCCGACTAAGGA-ATTCCTCGGCGGCTGCACGGCAGCTGATCTGGCACAGCAGAAA-GG 1985
|| |||| ||||| | || | || || |||| |||||||||| |||||||||| ||| ||
Sbjct 1905 ACTCGACGAAGGATAATCTT-GGTGGATGCATGGCAGCTGATTTGGCACAGCA-AAACGG 1962
Query 1986 TTATGACGGTTTAGCAGCTTTTCTTGCTGAGAAATGTCTTC-TAGCACAGTTCA-AGGAC 2043
|||||||||||||| |||| |||||||||||||||| || | || ||||| | || ||
Sbjct 1963 ATATGACGGTTTAGCTGCTTATCTTGCTGAGAAATGT-TTGGTTGCTCAGTTTAGAG-AC 2020
Query 2044 ATGGAAATGGCTGGAAACATCAGTGGCAAACTTGAAACCAT-CAAGGCAGAGAAGTCATC 2102
||| |||| ||||||||||||| |||| | || || | | ||||||||||| || |
Sbjct 2021 ATGAAAATTGCTGGAAACATCACTGGCGATCTGGAGGCT-TGCAAGGCAGAGATGT--T- 2076
Query 2103 GAATCCAGGGAA-TGCAAATG-AAGAGGAGCAGAGCCTGAAGGACACTCTGGCGGCATAC 2160
||| ||| || | | | | | |||| |||||||| || ||||| |||| || ||||||
Sbjct 2077 GAA-CCAAGGCACT-CTACCGGAAGATGAGCAGAGTCTCAAGGATGCTCTTGCAGCATAC 2134
Query 2161 AGAACTGCTGCAGAGGCAGCGGCGCGTATTCAGGGAGCGTTCAGGGAGCACGAGCTGAAA 2220
||||| |||||||| |||||||| || ||||| || ||||| ||||| | | ||| |||
Sbjct 2135 AGAACAGCTGCAGAAGCAGCGGCTCGGATTCAAGGTGCGTTTAGGGAAAAAGCGCT-AAA 2193
Query 2221 GTTAG---G-TCAAGCGCCG-TT-AGGTTTGCTAGCAAGGAAGAAGAAGCCAAAAACATA 2274
| || | ||||||| | || || ||||||| ||| |||||||| ||||| | ||||
Sbjct 2194 GGCAGCACGGTCAAGCGT-GATTCAG-TTTGCTAACAAAGAAGAAGAGGCCAAGAGCATA 2251
Query 2275 ATTGCCGCGATGAAGATTCAGCACGCGTTTCGCAATT-TCGAGGTTCGTAGGAAGATTGC 2333
|| || ||||||||||||||| | ||||| || || | | || ||||||||||| |
Sbjct 2252 ATCGCGGCGATGAAGATTCAGAATGCGTTCCGGAAATAT-GATACACGTAGGAAGATAGA 2310
Query 2334 AGCTGCTG-CTCGGATTCAGTACAGGTTCCAAACATGGAAAATGAGGCGG-GAGTTTTTG 2391
||| ||| | |||||||| | |||||||||||| |||||||| | | | |||| | ||
Sbjct 2311 AGCCGCTTAC-CGGATTCAATGCAGGTTCCAAACTTGGAAAAT-ACGAAGAGAGTATCTG 2368
Query 2392 AACATGCGGAAT-AAGGCAATTAGGATCCAGGCTGTGTTT-AGAGGG-TTCCAAGTAAGA 2448
||||||||| ||| |||||||||||||||||| ||| || ||| || |||| |||
Sbjct 2369 AACATGCGGCGCCAAG-CAATTAGGATCCAGGCTGC-TTTCAG-GGGATTACAAGCAAGG 2425
Query 2449 AGACAGTACCAGAAAATAACATGGTCGGTGGGAGTTCTTG-AGAAGGC-GATTCTGAGAT 2506
|| |||||| |||| ||| |||||||| ||||| ||| ||||||| | || |||| |
Sbjct 2426 AGGCAGTACAAGAAGATATTGTGGTCGGTAGGAGTA-TTGGAGAAGGCAGTTT-TGAGGT 2483
Query 2507 GGAGACTGAAGAGAAAAGG-TTTCAGAGGGCTTCAGGTTAGGCAACCTGAGGAGAAGGAA 2565
|||||| ||||||||||| ||| ||||| || |||||| | || | |||||| |
Sbjct 2484 GGAGACAAAAGAGAAAAGGGTTT-AGAGGACTCCAGGTT-G-CAGCA-GAGGAGGATTCT 2539
Query 2566 GGAAGTGAGGCGGTGGAGGATTTCTACAAGACAAGCCAGAAACAAGCAGAGGA-ACGGCT 2624
||||||| ||| |||||||||||||||||||||| |||||||||||| | ||||
Sbjct 2540 CCTGGTGAGGCACAGGAAGATTTCTACAAGACAAGCCAGAGACAAGCAGAGGAGA-GGCT 2598
Query 2625 CGAGAGGTCAGTGGTTAAAGTCCAGGCCATGTTCCGGTCCAAGAAGGCTCAGCAAGATTA 2684
|||||| || || || ||| || ||||||||| |||| ||||||||||| || |||||
Sbjct 2599 CGAGAGATCTGTAGTGCGAGTACAAGCCATGTTCAGGTCTAAGAAGGCTCAACAGGATTA 2658
Query 2685 CAGAAGGATGAAACTGGCTCATGAAGAAGCTCAGCTGGAGTA 2726
||||||||||||||| ||||||||||||||||| |||||||
Sbjct 2659 CAGAAGGATGAAACTCACTCATGAAGAAGCTCAGTTGGAGTA 2700
Score = 440 bits (238), Expect = 3e-122
Identities = 364/426 (85%), Gaps = 4/426 (1%)
Strand=Plus/Plus
Query 19 GGCAGGCTTATCGGCTCTGAGATTCATGGATTCCATACTTTACAAGATCTAGATATACAA 78
||||| || |||||||| |||||||||||||||||||| ||||||||||| ||| ||||
Sbjct 203 GGCAGACTAATCGGCTCGGAGATTCATGGATTCCATACCTTACAAGATCTTGATGTACAG 262
Query 79 ACAATGTTGGATGAAGCATACAGTAGGTGGCTCCGGCCTAATGAGATCCATGCTCTCCTC 138
||||||||||| |||||| | || |||||||| ||||| || ||||||||||| |||||
Sbjct 263 ACAATGTTGGAGGAAGCAAAAAGCAGGTGGCTACGGCCAAACGAGATCCATGCAATCCTC 322
Query 139 TGTAACCATAAATTCTTCACCATCAACGTCAAGCCTGTGAATTTACCCAAAAGTGGTACG 198
| ||||| |||| |||||| ||||| |||||||| ||||| |||||||| ||||| | |
Sbjct 323 TATAACCCGAAATACTTCACTATCAATGTCAAGCCAGTGAACTTACCCAATAGTGGCA-G 381
Query 199 -ATTGTGTTGTTTGATCGTAAGATGTTGAGAAACTTTAGAAAGGATGGTCATAACTGGAA 257
||| | || || || |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 382 AATTATATTATTCGACCGTAAGATGTTGAGGAACTTCAGAAAGGATGGTCATAACTGGAA 441
Query 258 AAAGAAAAAGGATGGAAAGACAATTAAGGAAGCTCATGAACACCTGAAAGTCGGTAATGA 317
||||||||||||||||| |||| | || || |||||||||||||||||||| ||||| ||
Sbjct 442 AAAGAAAAAGGATGGAAGGACAGTCAAAGAGGCTCATGAACACCTGAAAGTTGGTAACGA 501
Query 318 GGAAAGGATTCATGTTTACTATGCGCATGGTGAGGATACCCCTACATTTGTGCGAAGGTG 377
||||||||||||||| ||||||||||||||||| |||| | |||| ||||| ||||| ||
Sbjct 502 GGAAAGGATTCATGTATACTATGCGCATGGTGAAGATAACACTACCTTTGTTCGAAGATG 561
Query 378 TTACTGGTTATTGGATAAGTCTC-AGGAGCACATAGTTCTTGTCCACTATCGTGAGACAC 436
||| |||||| |||||||| ||| || || |||| || ||||| || || ||||| ||||
Sbjct 562 TTATTGGTTACTGGATAAGGCTCGAG-AGAACATCGTCCTTGTACATTACCGTGATACAC 620
Query 437 ATGAGG 442
| ||||
Sbjct 621 AGGAGG 626
> AT5G05435.1 | Symbols: | other RNA | chr5:1606552-1607656 FORWARD
LENGTH=626
Length=626
Score = 91.6 bits (49), Expect = 4e-17
Identities = 59/64 (92%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 2 TGGCCGGTGTTGATTCCGGCAGGCTTATCGGCTCTGAGATTCATGGATTCCATACTTTAC 61
|||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 109 TGGCCGACGTTGATTTCGGTAGGCTTATCGGCTCTGAGATTCATGGATTCCATACTTTGC 168
Query 62 AAGA 65
||||
Sbjct 169 AAGA 172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137708258535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5