BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg355185 Length=3462 Score E Sequences producing significant alignments: (Bits) Value AT4G15810.1 | Symbols: | P-loop containing nucleoside triphosp... 1256 0.0 > AT4G15810.1 | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:8989162-8992591 REVERSE LENGTH=2757 Length=2757 Score = 1256 bits (680), Expect = 0.0 Identities = 937/1059 (88%), Gaps = 26/1059 (2%) Strand=Plus/Plus Query 733 GAAGAGGTGAGAATGAACTATTCAGATGAATTTGATGATGGTTTAG-TGTCCTTTGGGAA 791 ||||||||||||||||||||||||||| |||| ||||||||||| | ||||||||||||| Sbjct 424 GAAGAGGTGAGAATGAACTATTCAGATAAATTAGATGATGGTTT-GATGTCCTTTGGGAA 482 Query 792 TAGTGAAGAATCGAGTCTCGGTGTTGTTCCACCAGGAGGTTTTAATGATTTTAAGGCAGA 851 || ||||||||| |||||| | | ||||||||||| ||||| || |||||||| |||||| Sbjct 483 TATTGAAGAATCAAGTCTC-G-G-TGTTCCACCAGAAGGTTCTAGTGATTTTATGGCAGA 539 Query 852 AACTGAAGGGAACTCTATTGAGGCAAGTATGGAAGTGGGTCAAAGTTTCAAGCAACTTTT 911 || |||||||||||||| |||||| ||||| ||| ||||||||| |||||||||||| | Sbjct 540 AAATGAAGGGAACTCTAGTGAGGCGAGTATAGAATTGGGTCAAAATTTCAAGCAACTCAT 599 Query 912 GGAGACTGGGG-TTGTTCAAAGAACCATCATCAAGGAGGAT-GGGAGTGGTAGCAATAAT 969 |||| |||| | | | |||| ||||||| |||||||||| | | ||||||||| | || Sbjct 600 CGAGAAAGGGGATAG-TAAAAGTACCATCAACAAGGAGGATAGTG-GTGGTAGCATTCAT 657 Query 970 GAATTCGACGCATTGATGATA-TTAAATGATGCAGAAAGAGTAGAAGATAGTGCAGTTGA 1028 ||||| ||||||||||||| | || ||||| ||||||||||||||||||||||||||| Sbjct 658 GAATTTGACGCATTGATGA-AGCCAAGTGATGTAGAAAGAGTAGAAGATAGTGCAGTTGA 716 Query 1029 ATTAGTAGAAATGGTAATGACTGATAAACCAGAATACGTAGGTTCTAATACAGGTGAACT 1088 ||||| | |||||| ||||| ||||||||||||||||| ||||||||||| ||||||||| Sbjct 717 ATTAGCAAAAATGGGAATGAATGATAAACCAGAATACGCAGGTTCTAATATAGGTGAACT 776 Query 1089 TGTTTCGAAAGAGGAAGATATGGTACAAGAGAAATCTTCTGACGGTGGGTTGGTGTCCTT 1148 ||| || | |||||||| ||||||||||||||||||||||||| || ||| ||||| || Sbjct 777 TGTATCCATAGAGGAAGTTATGGTACAAGAGAAATCTTCTGACAATGTGTTAGTGTCTTT 836 Query 1149 TGCGAGTAGTCTTGGTGTTGTGACAGGTGATTGCAATGAGTTTCTGGTGGAAAGTGAAGG 1208 || |||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| Sbjct 837 TGAGAGTAGTCTTGGTGTTATGACAGGTGAATGCAAGGAGTTTCTGGTGGAAAGTGAAGG 896 Query 1209 AAACGCTGTTGATGAGGATAAAGGATTAGATGAAACTGTCACTGTCAGCAGCCTTGTCGA 1268 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 897 AAACGCTGTTGATGAGGATAAAGGATTAGATGAAACTGT-A-----AGCAGCCTTGTCGA 950 Query 1269 ACAAGGGGTGGTTGTGGGTCAAGGAAGTACCAGCAAGGAGAGCAATAACAGAACTCATGT 1328 ||||||||||| || |||| |||||||||||||||||||||||||||||| |||| Sbjct 951 ACAAGGGGTGG--GT----CAAGCTAGTACCAGCAAGGAGAGCAATAACAGAACTGATGT 1004 Query 1329 TGGGAGTGCCTGTGAAGCAGATGAATTGATGATTCCAGGTAACGGGTCTATTGGATCAGA 1388 ||| |||| |||||| |||||||||||||| |||||| || ||| ||||||||||||||| Sbjct 1005 TGGTAGTGTCTGTGATGCAGATGAATTGATAATTCCACGTGACGAGTCTATTGGATCAGA 1064 Query 1389 AAGCAGAGACTCATGGGATGAAGACGCTGGAAATATGATAGGTGAGGCAAAAGAACACTG 1448 ||||||||||||| ||||| |||||||||||||||||||||| ||||| |||||||||| Sbjct 1065 AAGCAGAGACTCAGGGGATAAAGACGCTGGAAATATGATAGGCAAGGCAGAAGAACACTG 1124 Query 1449 TGGAAATGATTGTGGTGCTGTTTGCGAATTAGAAAAAACT-GAATGTGAGGGCGGACCTG 1507 || ||||||| ||||||||||| |||||||||||||| || || || | || | ||||| Sbjct 1125 TGAAAATGATCGTGGTGCTGTTAGCGAATTAGAAAAA-CTTGAGTGCGCGGATGAACCTG 1183 Query 1508 AAGTTGTTATGAGCTCTGAAAGTGTTCAGTTAACTCCCCCTCCGGATTCTGAAACGACGA 1567 || ||| |||||| ||||||||| ||||||||||||| || | |||||||||| || | Sbjct 1184 AAATTGGTATGAGTTCTGAAAGTTTTCAGTTAACTCCAACTTCAGATTCTGAAATGATAA 1243 Query 1568 GGAACCTTGAGGACGCTGGAGGAATAGATGTCGCTGTAAGTGGGTGTGGTTCTTCTGATC 1627 ||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||| |||| Sbjct 1244 TGAACCTTGAGGTCGCTGGAGGAATAGATGTCGTTGTAATTGGTTGTGGTTCTTCCGATC 1303 Query 1628 GAAAAGCTGAACAAGAATCTGAAAATGAAGGAAATCAAGAATCAGACGATACTGATAGGA 1687 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1304 AAAAAGCTGAAGAAGAATCTGAAAATGAAGGAAATCAAGAATCAGACGATACTGATAGGA 1363 Query 1688 AGTTATCACTTCCTGATGAAGATAGAGCATCAAGTTTAAGAAGTTCCTTTGAAACAGCCA 1747 |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1364 AGTTGTCACTTCCTGATGAAGATAGAGCATCAAGTTTAATAAGTTCCTTTGAAACAGCCA 1423 Query 1748 ATGAGACTGTGGAAGATGGGAAGCAGATTAATAAGCAGG 1786 |||||||||||||||||||||| || ||||||||||||| Sbjct 1424 ATGAGACTGTGGAAGATGGGAATCA-ATTAATAAGCAGG 1461 Score = 826 bits (447), Expect = 0.0 Identities = 583/649 (90%), Gaps = 7/649 (1%) Strand=Plus/Plus Query 1873 ACCATGCCTGAAAACTCTTCGGTAATTGGTTATGATATAATGGAAAATGATACGCGGATG 1932 |||||||||||||||||||| ||||||| ||||||||||||||||||||| | | |||| Sbjct 1462 ACCATGCCTGAAAACTCTTCCGTAATTGCTTATGATATAATGGAAAATGAGA--C-GATG 1518 Query 1933 GCACCGCTGATTCACAATCACACGTTTGTGAAGCTTGACGAGTACGAAGGAACATGTGAT 1992 |||| ||||||||| |||||||| ||| || ||||||||||||||||||||||| ||||| Sbjct 1519 GCACGGCTGATTCATAATCACACTTTTATGGAGCTTGACGAGTACGAAGGAACAGGTGAT 1578 Query 1993 ACAAGGGAGAGACTCTCTGAATCCAGTTTCCAGAATTATTCTGAAGTATTATGCTCTGAT 2052 ||||| |||| |||| ||| ||||||||||||||||| ||| ||| |||||| |||| || Sbjct 1579 ACAAGTGAGAAACTCACTGGATCCAGTTTCCAGAATTCTTCAGAACTATTATCCTCTAAT 1638 Query 2053 CATTCTGTGCAGCTGATAAGTGAGAAAGTGAAAGAGAGAGTTGAGAAGACCCAGCTCTTG 2112 ||||||||| ||||||||||||||| |||||| || |||||||||||||| ||||||||| Sbjct 1639 CATTCTGTGGAGCTGATAAGTGAGAGAGTGAAGGAAAGAGTTGAGAAGACTCAGCTCTTG 1698 Query 2113 AAAGAAAAGCTCCAGAGGATTATAAGAAGAACA-GATCTTTGCAGTGAAAATTTAACTGT 2171 || |||||||||||||||||||||||||||||| | |||| || ||||||||| |||||| Sbjct 1699 AAGGAAAAGCTCCAGAGGATTATAAGAAGAACATG-TCTTAGCCGTGAAAATTCAACTGT 1757 Query 2172 TACTGAAGTTGAGTCTAAGCTGAGCATAGCTGGTGGAGAACATCAAACGACCTTAGGGCT 2231 |||| |||||| ||||||| ||||| |||||||||||||||||| |||| |||||||||| Sbjct 1758 TACTAAAGTTGCGTCTAAGATGAGCCTAGCTGGTGGAGAACATCCAACGTCCTTAGGGCT 1817 Query 2232 GGATAACGTGTCTGATAGAACAAAGATAATGCTGCCTGAACATGAGTTTCCAGATGATCT 2291 ||| || ||| ||| ||||||||||| ||||||||||||| |||||||||| |||||| Sbjct 1818 TGATCACATGTTTGACGGAACAAAGATAGTGCTGCCTGAACAAGAGTTTCCAGCTGATCT 1877 Query 2292 AGACTTCTCCATTAATGTCCTTGTTATCGGGAAAACCGGGGTGGGAAAAAGTGCAACGGT 2351 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1878 AGACTTCTCCATTAACGTCCTTGTTATCGGGAAAACTGGGGTGGGAAAAAGTGCAACGGT 1937 Query 2352 TAATTCTATATTTGGGGAGAC-AAAGTCTCCTGTTGGTGCATTTGGAGTTACCACCAAGT 2410 ||||||||| ||||||||||| ||| ||| ||||||||||||||||||||||||| || | Sbjct 1938 TAATTCTATTTTTGGGGAGACTAAA-TCTGCTGTTGGTGCATTTGGAGTTACCACTAACT 1996 Query 2411 CTGAAAATTACGTGGTTGGGAATGTAGGAGGAATCCTGATAAGAATACTGGATACGCCAG 2470 ||| |||||| || |||||||||||||||||||||| |||||| ||||| |||||||||| Sbjct 1997 CTGCAAATTATGTTGTTGGGAATGTAGGAGGAATCCAGATAAGTATACTTGATACGCCAG 2056 Query 2471 GTCTCATGTCCTCTGCATCTGAGGAACAGTTGAATCTGGAAGTCCTTAT 2519 | ||| ||||||||||| ||||||||||||| |||| |||||||||||| Sbjct 2057 GACTCTTGTCCTCTGCAACTGAGGAACAGTTTAATCAGGAAGTCCTTAT 2105 Score = 634 bits (343), Expect = 2e-180 Identities = 569/670 (85%), Gaps = 47/670 (7%) Strand=Plus/Plus Query 2785 AGCAAGATGCCT-GGAATTGTGCTGGCAGAGAACAACATGAGC-TCTTTCTCCACAAACA 2842 |||||||||||| |||||||| ||||||||||||||||||||| || |||||| |||||| Sbjct 2106 AGCAAGATGCCTAGGAATTGTTCTGGCAGAGAACAACATGAGCTTC-TTCTCCGCAAACA 2164 Query 2843 AAAGAAGCGAATCTACATGTCCGGACTGGAGATTGAACTTGCTGATCTTATGTTGTTCAG 2902 |||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| |||| Sbjct 2165 AAAGCAGCGAATCTACATGTTCGGATTGGAGATTGAACTTGCTGATCTTATGTTGCTCAG 2224 Query 2903 TTAAGATCCGGTCAAAAGCCGGTT-TATTGCAAAAGCAGATTACCGTTGTAGAAAAGGCC 2961 ||||||||||||| |||||||||| | ||||||||||||| ||||| ||||||||||||| Sbjct 2225 TTAAGATCCGGTCTAAAGCCGGTTCT-TTGCAAAAGCAGAATACCGATGTAGAAAAGGCC 2283 Query 2962 GATGTATTTGGCAGCCAGCTTCA-CTCATTT-ACTCTATTCTGTTCCTTGTGGAATGTGT 3019 | ||| |||||| ||||||| | ||| ||| |||||||||||||||||||||||||||| Sbjct 2284 GGTGTCTTTGGCTCCCAGCTT-AGCTC-TTTCACTCTATTCTGTTCCTTGTGGAATGTGT 2341 Query 3020 TGCTTCTTGGGGCTAACTCAGGGCACACTTCTCATTCACATGATGATTTGGAGGAGAAGA 3079 | ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2342 TACTT---------AACTCAGGGCACACTTCTCATTCACATGATGATTTGGAGGAGAAGA 2392 Query 3080 AAAGGCAGTTAATGGATTCTTACCCTAAAATCATCTGGGACGAACAGAGTCAAGAATGTC 3139 ||||| | ||| |||||||||||||| |||| || ||||||||||||||||||||||||| Sbjct 2393 AAAGGAAATTACTGGATTCTTACCCTGAAATTATATGGGACGAACAGAGTCAAGAATGTC 2452 Query 3140 TCGAGCAAAGAGAGAGT-CAAGAACCAGAAGACCAGGAGAGGCGAGATGAAAAAGGAAAA 3198 |||||||| || | | | | | |||| | || | | | ||| || ||| | Sbjct 2453 TCGAGCAA-GAAACACTTCTCGTGG-AGAAT-CAAG-A-AT-C-AGAAGACGT-GGAGAG 2504 Query 3199 ACAAACAGAGGCTTGGAAGAAGTAACTGTTCGTGGTCGTAT--GA----GAAGAGGAAGA 3252 |||| || | | || ||| |||||| | ||||||| | || ||||||||||| Sbjct 2505 ACAA-CA-----T-GAAA-AAGGAACTGTACTTGGTCGTGTAAGAACCAGAAGAGGAAGA 2556 Query 3253 CTTGGGTTCCAAGCAACAAAAAGGTTCGGTATCTATCTCGATACATCTGATTTGCACACC 3312 ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| | Sbjct 2557 CTTGGATTCCAAGCAACAAAAAGGTTCGGTATCTATCTAGATACATCTGATGTGCACGCA 2616 Query 3313 GGGTTCTCCATTGGAAGTCGAGGCTGTAGAAAGAAC-G-AGCAAGAAGAAGG-AAGGATC 3369 ||||| ||||||||||| |||| |||||||| ||| | | ||||||||||| ||| ||| Sbjct 2617 GGGTTTTCCATTGGAAGCCGAGACTGTAGAA-GAAATGTA-CAAGAAGAAGGGAAG-ATC 2673 Query 3370 TTGGTGAGGATGAGAGGCTCAATGTCTGTTTTAGGTTTGGTTCCTATGTTGATGTCCGTT 3429 |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 2674 TTGGTGAGGATGAGAGGCTCCATGTCTGTTTTAGGTTTGGTTCCTATGTTGATATCCGTA 2733 Query 3430 TTCACTTCTG 3439 |||||||||| Sbjct 2734 TTCACTTCTG 2743 Score = 220 bits (119), Expect = 6e-56 Identities = 174/198 (88%), Gaps = 14/198 (7%) Strand=Plus/Plus Query 197 CAAGTAGTGAAGCTAGTAGTTACAGTAATGGACTTGATTTTGAGACTGATGAAGATGAGA 256 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 131 CAAGTAGTGAAGCTAGTAGTTATAGTAATGGACTTGATTTTGAGACTGATGAAGATGAGA 190 Query 257 CTGAGGAGTTAGAGGATGTGATTTTGGGTGGGGTTAGGGTTGATAGGCTACTAGGGGAAG 316 ||| | |||||||||||| |||||| |||||||||||| ||||||||||||||||||| Sbjct 191 CTGTG---TTAGAGGATGTGGTTTTGGATGGGGTTAGGGTAGATAGGCTACTAGGGGAAG 247 Query 317 AGTTCGGTGGAGAGATTGGAGATGAAAGTGAGTTTTCAGGTGGGAGTGTGATTTATAGAC 376 |||| |||||||| | ||| | | ||| ||| |||||||||||| ||||||||||| Sbjct 248 AGTTAGGTGGAGA--T-GGA-A-G----TGAATTT-CAGGTGGGAGTGGGATTTATAGAC 297 Query 377 CATTTGCTG-GTGATGTT 393 ||||||| | |||| ||| Sbjct 298 CATTTGCAGAGTGAAGTT 315 Score = 176 bits (95), Expect = 1e-42 Identities = 107/113 (95%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 472 AGTGAAGTTAGTGAAGGTGAAAGAGGTAGCATGAAAGCAAAAGTTGTCATTCCTCGTGCT 531 ||||||||||||| || |||||||||||| |||||||||||||| ||||||||||| ||| Sbjct 307 AGTGAAGTTAGTGGAGATGAAAGAGGTAGTATGAAAGCAAAAGTAGTCATTCCTCGGGCT 366 Query 532 GTTTTGTCTTTGGATGATGATGAGTTTGATGAAATTTTGGGTAGTGATGATGA 584 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 367 GTTTTGTCTTTGGATGATGATGAGTTTGATGAAATTTTGGGTAGTGATGTTGA 419 Score = 132 bits (71), Expect = 3e-29 Identities = 109/125 (87%), Gaps = 12/125 (10%) Strand=Plus/Plus Query 1 ATGGAGTCGGAGAAGCCTGGGATTGTTTCAA-T-T--CT----C-AC-G--GATTCGGAG 48 ||||| ||||||||||||||||||||||||| | | || | || | ||||||||| Sbjct 1 ATGGAATCGGAGAAGCCTGGGATTGTTTCAATTCTCGCTGCAGCAACGGTCGATTCGGAG 60 Query 49 AAACCTCGCGTTTCAATTTCCGCGGTTAGAGCGGTTGCGGCGGCAAGAGCTGATTCGTTT 108 |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||| Sbjct 61 AAACCTCGCGTTTCAATTTCTGCGGTGAGAGCGATTGCGGCGGCAAGAGCTGATTCGTTT 120 Query 109 CTTCT 113 ||||| Sbjct 121 CTTCT 125 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 172323449205 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5