BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg355547 Length=1341 Score E Sequences producing significant alignments: (Bits) Value AT5G35580.1 | Symbols: | Protein kinase superfamily protein | ... 1895 0.0 AT2G05940.1 | Symbols: | Protein kinase superfamily protein | ... 793 0.0 AT2G28930.1 | Symbols: APK1B, PK1B | protein kinase 1B | chr2:1... 102 8e-21 > AT5G35580.1 | Symbols: | Protein kinase superfamily protein | chr5:13761965-13763944 FORWARD LENGTH=1593 Length=1593 Score = 1895 bits (1026), Expect = 0.0 Identities = 1136/1191 (95%), Gaps = 0/1191 (0%) Strand=Plus/Plus Query 22 TCTTGGAGATCATTAATGGTTTTGTGTTTCCAAGATCCAGACAACATATATTCTCCCAAG 81 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTTGGAGATCATTGATGGTTTTGTGTTTCCAAGATCCAGACAACATATATTCTCCCAAG 60 Query 82 AAGACAAAGAAAGATGATGGTCAAGGTGTGATAACCAAACAGAAATCGTTTCTCGGATTG 141 ||||||||||||||||||||| || ||||||| |||||||||||||||||||| |||||| Sbjct 61 AAGACAAAGAAAGATGATGGTGAACGTGTGATTACCAAACAGAAATCGTTTCTTGGATTG 120 Query 142 TCGATTCTAGACATAAGCAATCCAAGTTCCACTACCTTTTCGGAAGATCTCTCAATCTCT 201 ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| Sbjct 121 TCGATTCTAGACATAAGTAATCCAAGTTCCACTACCTTGTCCGAAGATCTCTCAATCTCC 180 Query 202 CTCGCCGGCTCCGATCTCCATGTATTCACACAAGCAGAGCTTAAAGTCATAACACAAAGC 261 ||||||||||| |||||||| || ||||||||||||||||||| |||||||||||||||| Sbjct 181 CTCGCCGGCTCGGATCTCCACGTGTTCACACAAGCAGAGCTTAGAGTCATAACACAAAGC 240 Query 262 TTCTCTTCTAGCAACTTTCTTGGTGAAGGAGGGTTTGGGCCGGTTCACAAAGGGTTTATT 321 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || Sbjct 241 TTCTCTTCTAGCAACTTTCTTGGTGAAGGAGGGTTTGGTCCGGTTCATAAAGGGTTCATC 300 Query 322 GACGACAGGCTCCGTCCTGGTCTTAAGGCTCAGCCTGTCGCTGTTAAACTTCTCGATCTT 381 || |||| ||||||||||||||||||||||||||| || || ||||||||||| |||||| Sbjct 301 GATGACAAGCTCCGTCCTGGTCTTAAGGCTCAGCCCGTTGCCGTTAAACTTCTTGATCTT 360 Query 382 GATGGTCTTCAAGGTCACCGTGAGTGGATGACGGAGGTCATGTGTTTGGGAAAACTAAAG 441 ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 361 GATGGTCTTCAAGGTCACCGTGAGTTTATGACGGAGGTTATGTGTTTGGGAAAACTAAAG 420 Query 442 CACCCGAATCTGGTGAAGCTGATCGGATATTGCTGCGAGGAAGAACATAGACTTCTTGTT 501 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 421 CATCCGAATCTGGTGAAGCTGATCGGATATTGCTGCGAGGAAGCACATAGACTTCTTGTT 480 Query 502 TATGAGTTCATGCCTCGTGGAAGTTTAGAGTCTCAACTCTTCAGAAGGTGTTCCCTACCG 561 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 481 TATGAGTTCATGCCTCGTGGAAGTTTGGAGTCTCAACTCTTCAGAAGGTGCTCCCTACCG 540 Query 562 CTGCCATGGACAACTAGGTTGAAGATCGCTTACGAAGCTGCCAAGGGTCTACAGTTTCTC 621 |||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||| Sbjct 541 CTGCCATGGACAACGAGGTTGAACATCGCTTATGAAGCTGCAAAGGGTCTACAGTTTCTA 600 Query 622 CATGAAGCCGAGAAGCCTGTCATCTATCGCGATTTCAAGGCCTCCAATATCTTGTTAGAT 681 ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 601 CATGAAGCCGAGAAGCCCATCATCTATCGCGATTTCAAGGCCTCTAATATCTTGTTAGAT 660 Query 682 TCTGATTATACAGCGAAACTCTCGGACTTCGGGCTAGCAAAAGACGGACCACAAGGCGAT 741 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TCTGATTATACAGCGAAACTCTCGGACTTCGGGCTAGCAAAAGACGGACCACAAGGCGAT 720 Query 742 GATACACATGTGTCCACTCGCGTGATGGGCACACAAGGGTACGCGGCGCCAGAGTACATA 801 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GATACACATGTGTCGACTCGCGTGATGGGCACACAAGGGTACGCGGCGCCAGAGTACATA 780 Query 802 ATGACAGGTCATCTAACGGCTAAGAGTGATGTATACAGCTTTGGAGTGGTGTTGCTTGAG 861 |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 781 ATGACAGGTCATTTAACGGCTAAGAGTGATGTGTACAGCTTTGGAGTGGTGTTGCTTGAG 840 Query 862 CTGTTGACAGGTCGGAAATCGGTGGACATAGCGAGATCGTCAAGGAAAGAAACCCTCGTT 921 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 841 CTGTTGACAGGTCGGAAATCGGTGGACATAGCGAGATCATCAAGAAAAGAAACCCTCGTT 900 Query 922 GAGTGGGCTCGTCCAATGCTCAACGACGTACGTAAACTCGGGAGAATAATGGACCCGAGG 981 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 901 GAGTGGGCTCGTCCAATGCTCAACGACGCACGTAAACTCGGGAGAATAATGGACCCGAGG 960 Query 982 CTTGAAGATCAGTACTCAGAGACCGGAGCACGAAAGGCAGCAACTCTAGCTTATCAATGC 1041 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 CTTGAAGATCAGTACTCAGAGACCGGAGCACGAAAGGCAGCAACTCTAGCTTATCAATGC 1020 Query 1042 CTAAGGTACCGACCAAAGACCAGGCCAGACATCAGCACTGTTGTCTCAGTTCTCCAAGAC 1101 |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct 1021 CTAAGGTACCGACCAAAGACAAGGCCAGACATTAGCACTGTTGTCTCCGTTCTCCAAGAC 1080 Query 1102 ATCAAAGATTACAAAGATGATATTCCCATTGGGGTATTCACTTACACGGTTCCTACTAAA 1161 ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || Sbjct 1081 ATCAAAGATTACAAAGATGATATTCCCATTGGGATATTCACTTACACCGTTCCTACCAAG 1140 Query 1162 CCAAGCCGTGAAGTTAAAGTGACAAGTCTTCAAAACTTTGACAAGCCTCGC 1212 ||| |||| |||||||||| ||||||||||||||||||||||||||| ||| Sbjct 1141 CCACGCCGGGAAGTTAAAGAGACAAGTCTTCAAAACTTTGACAAGCCACGC 1191 > AT2G05940.1 | Symbols: | Protein kinase superfamily protein | chr2:2287238-2289307 REVERSE LENGTH=1702 Length=1702 Score = 793 bits (429), Expect = 0.0 Identities = 834/1027 (81%), Gaps = 37/1027 (4%) Strand=Plus/Plus Query 142 TCGATTCTAGACATAAGCAATCCAAGTTCC-ACTACCTTT-TCGGAAGATCTCTCAATCT 199 ||||| || || || ||||||||||||||| || | |||| || |||||||| || || | Sbjct 176 TCGATACTTGATATGAGCAATCCAAGTTCCAAC-A-CTTTGTCAGAAGATCTATCGATTT 233 Query 200 CTCTCGCCGGCTCCGATCTCCATGTATTCACACAAGCAGAGCTTAAAGTCATAACACAAA 259 || | ||||| || ||||| ||||| || || | ||| |||||||||||||| ||||||| Sbjct 234 CTTTGGCCGGATCAGATCTTCATGTGTTTACCCTAGCGGAGCTTAAAGTCATTACACAAA 293 Query 260 GCTTCTCTTCTAGCAACTTTCTTGGTGAAGGAGGGTTTGGGCCGGTTCACAAAGGGTTT- 318 |||| || || | ||| ||||| |||||||| |||||||| || ||||| |||||||| Sbjct 294 GCTTTTCATCGACCAATTTTCTAGGTGAAGGTGGGTTTGGTCCTGTTCA-TAAGGGTTTC 352 Query 319 ATTGACGACAGGCTCCGTCCTGGTCTTAAGGCTCAGCCTGTCGCTGTTAAACTT-CTCGA 377 ||||| || | ||| |||||||||||||| ||||||||||| ||||||||| || || || Sbjct 353 ATTGATGATAAGCTACGTCCTGGTCTTAAAGCTCAGCCTGTTGCTGTTAAA-TTGCTTGA 411 Query 378 TCTTGATGGTCTTCAAGGTCACCGTGAGTGGATGACGGAGGTCATGTGTTTGGGAAAACT 437 |||||| |||||||||||||||||||| ||| ||||||| || |||| ||||||| || | Sbjct 412 TCTTGAAGGTCTTCAAGGTCACCGTGAATGGCTGACGGAAGTTATGTTTTTGGGACAATT 471 Query 438 AAAGCACCCGAATCTGGTGAAGCTGATCGGATATTGCTGCGAGGAAGAACATAG-ACTTC 496 |||||| ||| ||||||| |||| || ||||| || |||||||||||||| || || Sbjct 472 GAAGCACAAAAATTTGGTGAAATTGATTGGTTATTGTTGTGAGGAAGAACATAGAAC-TC 530 Query 497 TTGTTTATGAGTTCATGCCTCGTGGAAGTTTAGAGTCTCAACTCTTCAGAAGGTGTTC-- 554 |||||||||||||||||||||||||||| |||||| |||||| |||||||| | || Sbjct 531 TTGTTTATGAGTTCATGCCTCGTGGAAGCTTAGAGAATCAACTTTTCAGAAGATACTCTG 590 Query 555 CCTACCGCTGCCATGGACAACTAGGTTGAAGATCGCTTACGAAGCTGCCA-AGGGTCTAC 613 ||| | ||| |||||| |||| || ||||||||||| | | |||||| | ||| || | Sbjct 591 CCT-C-GCTTCCATGGTCAACAAGAATGAAGATCGCTCATGGAGCTGCAACAGGA-CTTC 647 Query 614 AGTTTCTCCATGAAGCCGAGAAGCCTGTCATCTATCGCGATTTCAAGGCCTCCAATATCT 673 | ||||| || ||||| || || ||||| |||||||| |||||||| ||||||||||||| Sbjct 648 AATTTCTACACGAAGCTGAAAATCCTGTTATCTATCGGGATTTCAAAGCCTCCAATATCT 707 Query 674 TGTTAGATTCTGATTATACAGCGAAACTCTCGGACTTCGGGCTAGCAAAAGACGGACCAC 733 |||||||||| ||||| || ||||||||||| ||||||||| |||| |||||||||||| Sbjct 708 TGTTAGATTCCGATTACACGGCGAAACTCTCTGACTTCGGGTTAGCCAAAGACGGACCAG 767 Query 734 AAGGCGATGATACACATGTGTCCACTCGCGTGATGGGCACACAAGGGTACGCGGCGCCAG 793 |||| || || || |||||||| ||||| ||||||||||||||||| ||||| || || | Sbjct 768 AAGGAGACGACACTCATGTGTCAACTCGAGTGATGGGCACACAAGGCTACGCAGCTCCTG 827 Query 794 AGTACATAATGACAGGTCATCTAACGGCTAAGA-GTGATGTATACAGCTTTGGAGTGGTG 852 | ||||| ||||| |||||| |||| || |||| |||| ||||||||||||||||| ||| Sbjct 828 AATACATCATGACCGGTCATTTAACAGC-AAGAAGTGACGTATACAGCTTTGGAGTTGTG 886 Query 853 TTGCTTGAGCTGTTGACAGGTCGGAAATCGGTGGACATAGCGAGATCGTCAAGGAAAGAA 912 ||||| ||||| ||||| || |||| ||| || |||| | |||||| || ||| || || Sbjct 887 TTGCTAGAGCTTTTGACCGGACGGAGATCAGTAGACAAAAAGAGATCATCGAGGGAACAA 946 Query 913 ACCCTCGTTGAGTGGGCTCGTCCAATGCTCAACGACGTACGTAAACTCGGGAGAATAATG 972 | ||| || || |||||||||||||||||||| ||| ||||||||| |||| ||| Sbjct 947 AACCTTGTGGACTGGGCTCGTCCAATGCTCAATGACCCACGTAAACTATCTCGAATCATG 1006 Query 973 GACCCGAGGCTTGAAGATCAGTACTCAGAGACCGGAGCACGAAAGGCAGCAAC-TCTAGC 1031 |||||||| ||||||| ||||||||||||||| |||||| |||| |||||||| | | || Sbjct 1007 GACCCGAGACTTGAAGGTCAGTACTCAGAGACAGGAGCAAGAAAAGCAGCAACAT-TGGC 1065 Query 1032 TTATCAATGCCTAAGGTACCGACCAAAGA-CCAGGCCA-GACATCAGCACTGTTGTCTC- 1088 ||| |||||| |||| | ||||| |||| || ||||| | || || | || ||||| Sbjct 1066 TTACCAATGCTTAAGCCATCGACCCAAGAACC-GGCCATGT-ATGAGTGCCGTCGTCTCT 1123 Query 1089 AGTTCTCCAA-GA-CATCAAAGATTACAAAGATGATATTCCCATTGGGGTA-TT-CACTT 1144 | | ||| || || | | ||||| || || ||||||||| || |||| | || ||||| Sbjct 1124 A-TACTC-AATGATCTT-AAAGACTATAA---TGATATTCCTAT-GGGG-ACTTTCACTT 1175 Query 1145 ACACGGT 1151 ||||||| Sbjct 1176 ACACGGT 1182 > AT2G28930.1 | Symbols: APK1B, PK1B | protein kinase 1B | chr2:12424775-12426674 FORWARD LENGTH=1563 Length=1563 Score = 102 bits (55), Expect = 8e-21 Identities = 229/309 (74%), Gaps = 28/309 (9%) Strand=Plus/Plus Query 441 GCACCCGAATCTGGTGAAGCTGATCGGATATTGCTGCGAGGAAGAACATAGACTTCTTGT 500 ||| || ||||| ||||| ||||| || ||||||| ||||| || ||| | |||||||| Sbjct 608 GCATCCTAATCTTGTGAAACTGATTGGTTATTGCTTAGAGGATGAGCATCGTCTTCTTGT 667 Query 501 TTATGAGTTCATGCCTCGTGGAAGTTTAGAGTCTCAACTCTTCAGAAG-GTGTTCCC-T- 557 |||||||||||||||||||||||| |||||| ||| | |||||||| | |||| | Sbjct 668 TTATGAGTTCATGCCTCGTGGAAGCTTAGAGAATCATTTGTTCAGAAGAG-GTTCTTATT 726 Query 558 ---A-CCGCTGCCATGGACAACTA-GGTTGAA-GAT-CGCTTACGAAGCTGCCAAGGGTC 610 | || | | ||||| || ||||||| | | | ||| | || || || |||| Sbjct 727 TTCAACCTTTATCTTGGACT-CTCCGGTTGAAAGTTGCTCTTG-GT-GCAGCGAAAGGTC 783 Query 611 TA-CAGTTTCTCCATGAA-GCCGAGA--AGCCTGTCATCTATCGCGATTTCAAGGCCTCC 666 | | |||||| ||| || ||||||| || |||||| || ||||||||||| | || Sbjct 784 TTGC-GTTTCTTCAT-AACGCCGAGACTAG--TGTCATATACCGCGATTTCAAAACGTCG 839 Query 667 AATAT-CTTG-TTAGATTCTGATTATACA-GCGAAACTCTCGGACTTCGGGCTAGCAAAA 723 ||||| || | || ||||| || || | | || || || || || ||||||||||| ||| Sbjct 840 AATATACT-GCTT-GATTCGGAGTACA-ATGCTAAGCTTTCTGATTTCGGGCTAGCTAAA 896 Query 724 GACGGACCA 732 ||||| ||| Sbjct 897 GACGGTCCA 905 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66013716675 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5