BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356151
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49980.1 | Symbols: | DNA/RNA polymerases superfamily prote... 1413 0.0
AT1G49970.1 | Symbols: CLPR1, NCLPP5, SVR2 | CLP protease prote... 518 9e-146
> AT1G49980.1 | Symbols: | DNA/RNA polymerases superfamily protein
| chr1:18507971-18513172 FORWARD LENGTH=2734
Length=2734
Score = 1413 bits (765), Expect = 0.0
Identities = 970/1065 (91%), Gaps = 29/1065 (3%)
Strand=Plus/Plus
Query 737 AACGATCCCAAATAGATTCTGAAAAGGTAATTCCAAATCAAGAATGTGTGGAGAAAGAAG 796
|||| |||||||||||||| | ||||||||||||||||||||| ||| || | |||||||
Sbjct 1587 AACGGTCCCAAATAGATTCCGGAAAGGTAATTCCAAATCAAGAGTGTATGAAAAAAGAAG 1646
Query 797 AAAGGCCGCAAGTATTGGAAGGAGATGCTCTGCTCAAAAAACACAAGGAGTGCAAACCAG 856
|||||| |||| |||||||||||||| | |||||||||||| ||||||||||||||||||
Sbjct 1647 AAAGGCTGCAAATATTGGAAGGAGATTCACTGCTCAAAAAATACAAGGAGTGCAAACCAG 1706
Query 857 ATACGAATCACTTGATGAATGATAGTTATAATGTACAAAACACCGAAGCAGTTTCAGTAT 916
|||| | ||||| ||||||||||| || ||||| | | |||||||||||||||||||
Sbjct 1707 ATACTAGTCACTCGATGAATGATAATTCTAATG--C---A-ACCGAAGCAGTTTCAGTAT 1760
Query 917 TTCCGCAAACGGAGCCATTATATTGGGTTGATGGGTACAAATGCGTCTTGTGTGGGATCG 976
|||| ||||||||||| ||||||||| |||| || ||||||||||||||||||||||| |
Sbjct 1761 TTCCACAAACGGAGCCGTTATATTGGATTGACGGCTACAAATGCGTCTTGTGTGGGATAG 1820
Query 977 AGTTACCACCATCTTTTGTAGAGGAACGACAAGAACACTCTGATTTTCATCTCGCTCAGA 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1821 AGTTACCACCATCTTTTGTAGAGGAACGACAAGAACACTCTGATTTTCATCTCGCTCAGA 1880
Query 1037 GACTTCAAAACGAAGAATCTGGCTCGAGTTCTTCCACAACACCTTCAAAACGAAGGATTC 1096
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1881 GACTTCAAAACGAAGAAACTGGCTCTAGTTCTTCCACAACACCTTCAAAACGAAGGATTC 1940
Query 1097 TCGGAAAGGAAAAGGTAAATTCCAAACCAAAGAAGCAGAAACCAGATCAAAAGGACAGTA 1156
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1941 TCGGAAAGGAAAAGGTAAATTCGAAGCCAAAGAAGCAGAAACCAGATCAAAAGGACAGTA 2000
Query 1157 GC-AA-ACA---C-A-A-A-G--------------AGCAATCAAAACTCGAACGAAACTC 1193
|| || ||| | | | | | |||||||||||||| |||||||| |
Sbjct 2001 GCAAACACATCCCAATACACGCATTCTTCACAAAAAGCAATCAAAACTCTAACGAAACCC 2060
Query 1194 AGAAGAAATGAAGATGGCTCTGATTCCAGCTAAACTCAATCTCTCACCGTCCAATTCCCT 1253
||| ||||||||||||||||||| ||| | ||||||| |||||||||||||||||||||
Sbjct 2061 AGAGGAAATGAAGATGGCTCTGAGCCCACCGAAACTCATTCTCTCACCGTCCAATTCCCT 2120
Query 1254 GGGTGAACCCAAATCATTACCGTCGATGTCAGACATCCTGACATCATCAAGAGCTCGAAA 1313
|| || |||| || ||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 2121 CGGCGATTCCAATTCCCTACCGTCGATGTCAGACATCCTGACGTCATCAAAAGCTCGAAA 2180
Query 1314 GATAGACTTAAAGATCCAAACTTTAGGACCGTTTTTCAGAGTGACGGGGAAGAACTTAGA 1373
| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||
Sbjct 2181 GCTAGACTTAAAGATCCAGACTTTAGGACCGTTTTTCAGAGTGACAGGGAAGAACGCAGA 2240
Query 1374 AACAGGCAGTGAGGTGGGAAGAGCAGAGGGAGTGGTGCGTCCATGGTTCGGACACGGCTT 1433
|| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 2241 CACGGGCGGTGAGGTGGGAAGAGCAGAGGGAGTGGTGCGTCCATGGTTCGGACGCGGTTT 2300
Query 1434 GGTTCTGCATTTGGATACGATAAGACTGACGAAAGAGACGGTGGCTATGGATAAATCTGT 1493
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 2301 GGTTCTGCATTTGGATACGATAAGACTGACGAAAGAGACAGTGGCTATGGATAAGTCTGT 2360
Query 1494 TCTTGGAGTTGGTTTATACGTCGGAGCTGTAGCTATTCGCCATGGCTACGACTGTGGTTG 1553
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2361 TCTTGGAGTTGGTTTATACGTCGGAGCTGTAGCGATTCGCCATGGCTACGACTGTGGTTG 2420
Query 1554 CCGCACTGCTCAGCTTCTCGCTATCTACGACTCCGATCTCTACCATTCCAAGCTGGTTAG 1613
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2421 CCGTACTGCTCAGCTTCTTGCTATCTACGACTCCGATCTCTACCATTCCAAGCTGGTTAG 2480
Query 1614 GTTTTACAGAAGAATTGGGTTCGAAGAGGTGAAAGAAGTGAGTGGGTCGTCGATTGGAGA 1673
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 2481 GTTTTACAGAAGAATTGGGTTCGAAGAGGTGAATGAAGTGAGTGGGTCGTCAATTGGAGA 2540
Query 1674 CATGGCTGACATGTTAATGTGGGGTGGAGTTGGTACTCGCATGGATGCTAATATACATCA 1733
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 2541 CATGGCTGACATGTTAGTGTGGGGCGGAGTTGGTACTCGCATGGATGCTAATATCCATCA 2600
Query 1734 TCTCCTTCTTAAATGGTCCAAAGTTTTCCTCAAATCACATTCTTA 1778
||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 2601 TCTTCTTTTTAAATGGTCCAAAGTTTTCCTCAAATCACATTCTTA 2645
Score = 499 bits (270), Expect = 3e-140
Identities = 321/345 (93%), Gaps = 6/345 (2%)
Strand=Plus/Plus
Query 399 TGAAATTGCAGAAATGCTATCTCATGACATGAAAAAGGAGGGTCTAACAGCAAGGACGTT 458
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1147 TGAACTTGCAGAAATGCTATCTCATGACATGAAAAAGGAGGGCCTAACAGCAAGAACGTT 1206
Query 459 GATACTTCAACTGAAAACTACCTCCTTTGAGATCAGAAGCAGAGCTGTTAGCCTGCAGAG 518
|| |||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1207 GACACTTAAACTGAAAACTGCCTCCTTTGAGATCAGGAGCAGAGCTGTTAGCCTGCAGAG 1266
Query 519 GTACACGTGTTCAAGTGATGATATACTAAAGCATGGTGCAAAGCTGTTGAAGGCGGAACT 578
||||||||||||||| ||||||||||||||||||| | |||||||||||||||| |||||
Sbjct 1267 GTACACGTGTTCAAGCGATGATATACTAAAGCATGCTACAAAGCTGTTGAAGGCAGAACT 1326
Query 579 TCCTGTTTCCGTATTGTTGATAGGTTTGCGCATGTCGCAGTTTGTTGGAGAAATCCGCAA 638
||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1327 TCCTGTTTCCGTAAGGTTGATAGGTTTGCGCATGTCGCAGTTCGTTGAAGAAATCCGCAA 1386
Query 639 TTCTGATCCTTCACAGGGAACTATTACTAAGTTCATCGTTCAAAAGGATTCTTCAAGACA 698
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1387 TTCTGATCCTTCACAGGGAACTATTACTAAGTTCATCGTTCAAAAGGATTCCTCAAGACA 1446
Query 699 AG-A-----TCTGGATGATAATGACTCATTTGACTTAGATGCTAA 737
|| | ||||||||| ||||||||||||||||| ||||||||
Sbjct 1447 AGCACAAGATCTGGATGACAATGACTCATTTGACTTGGATGCTAA 1491
> AT1G49970.1 | Symbols: CLPR1, NCLPP5, SVR2 | CLP protease proteolytic
subunit 1 | chr1:18501570-18504609 REVERSE LENGTH=1677
Length=1677
Score = 518 bits (280), Expect = 9e-146
Identities = 312/327 (95%), Gaps = 4/327 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACTTCTCTGGTCTCTCCTCTTACTTCACAGCTCAACCATGAAGCTGTCTGTTCC 60
||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 148 ATGGCGACTGCTCTGGTTTCTCCTCTTACTTCACAACTCAACCATGAAGCTGTCTGTTCC 207
Query 61 AAGTTCGTGCTT-CCCAAATCACCGTTCATGTCGGGATCTAAGCTCTTTTCATCGAACAT 119
||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 208 AAGTTTGTG-TTACCCAAATCGCCGTTCATGTCGGGATCTAAGCTCTTTTCATCGAACAT 266
Query 120 GCCTTGCTCTACTGTTCCTAGACGCACAAGAAGATCACACTGCTTTGCTTCTGCTAAAGA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 GCCTTGCTCTACTGTTCCTAGACGCACAAGAAGATCACACTGCTTTGCTTCTGCTAAAGA 326
Query 180 TATGAGCTTTGACCATATCCCTAAACAATTTCGAGGAGACAATCTCAAAGACGGAGTGAT 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 327 TATGAGCTTTGACCATATCCCTAAACAATTTCGTGGAGACAATCTCAAAGACGGAGTGAT 386
Query 240 GCAGAACTTCCAGA-CTGTACCGCAATATTTTTACGGGCTTAATCCAGCTCAAATGGATA 298
|||||||||| ||| | ||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 387 GCAGAACTTCAAGAAC-GTACCACAATATTTTTACGGGCTTAATTCAGCTCAAATGGATA 445
Query 299 TGTTCATGACGGAGGATAGCCCTGTCC 325
|||||||||| || |||||||||||||
Sbjct 446 TGTTCATGACAGAAGATAGCCCTGTCC 472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88001555385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5