BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356183
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38150.1 | Symbols: PMI15 | Plant protein of unknown functio... 2159 0.0
> AT5G38150.1 | Symbols: PMI15 | Plant protein of unknown function
(DUF827) | chr5:15223116-15225107 REVERSE LENGTH=1766
Length=1766
Score = 2159 bits (1169), Expect = 0.0
Identities = 1528/1697 (90%), Gaps = 42/1697 (2%)
Strand=Plus/Plus
Query 23 TACCAATTGTTAAGTCGTCTTTAGTTGTGGAGGCTATGCACATGTCAATAAAGAAACTTG 82
||||| | ||||||||||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 88 TACCAGTCGTTAAGTCGTCTTTAGTTGTGGAGGCTATACATATGTCAAGAAAGAAACTTG 147
Query 83 G-TGTGTACGATGAGAGCAGAGGAGATTCAGAGACTGCAAAAGCTAGAGCAGAAGCGGGA 141
| || |||| ||||||| ||| ||||||||||||||| ||||||||||| ||||||||||
Sbjct 148 GTTG-GTACAATGAGAGTAGAAGAGATTCAGAGACTGTAAAAGCTAGAGTAGAAGCGGGA 206
Query 142 TTGTCCGAGGTAAAGAAGTC----G-GGA-------TTACTTATAGAGATGTTGAACCGT 189
|||||||||||||||||||| | ||| ||||| ||| | | || ||| |||
Sbjct 207 TTGTCCGAGGTAAAGAAGTCGGTGGAGGAGCTCGCGTTACTGATAAAAAGGTCGAATCGT 266
Query 190 GGTCCGGAGTTTAAGGAAAAAGATATGGAAGTGTTGAAGATCGAGGAAAAGTACGCGGAA 249
| ||| |||| ||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 267 TCTGCGGGGTTTCAGGAAAAGGATATGGAAGTGTTGAAGATGGAGGAAAAGTATGCGGAA 326
Query 250 GTTATGAGAGTTTTGGAGGCTGTGAAAGAAGAAGTGAGTAGAGTGAAGCTTAATGTATCA 309
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 327 GTTATGAGAGTTTTGGAGGTTGTGAAAGAAGAAGTGAGTAGAGTGAAGCTTGATGTATCA 386
Query 310 TCTGTTTTGGGAGAGAGAATTGCAGCGGA-GAAAGAAGTCGAAGAATTGCGGTTTAAAAC 368
||||||||| ||||||| ||||||| || |||| ||||||||||| |||||||||||||
Sbjct 387 TCTGTTTTGATAGAGAGAGTTGCAGCAGAGGAAA-AAGTCGAAGAACTGCGGTTTAAAAC 445
Query 369 GGAAGGGAATTTGAGATTGTTGGAGAGTCTTAAGAAGGAAATCGAGGTTGCGAATGAGGA 428
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 446 GGAAGGGGGTTTGAGATTGTTGGAGAGTCTGAAGAAGGAAATCGAGGTTGCGAATGAGGA 505
Query 429 ACATTTGACGGCTGCATTGGGAAAGATTGAGGCGTTGAAGGGATATAAAGAGATAGAAAG 488
|||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 506 ACATTTGATGGTTGCATTGGGAAAGATTGAGGCGTTGAAAGGATATAAAGAGATAGAAAG 565
Query 489 GCAGAGAGAAGGGAAAGCTGTTGAGGTTTTGGATTTGTTGGTGGAAAGGAATAAGAGAAT 548
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 566 ACAGAGAGAAGGGAAAGCTATAAAGGTTTTGGATTTGTTGGTGGAAAGGAATAAGAGAAT 625
Query 549 CAAGAAAATGTTGGACGAGGCGGAAAGATCGAAGGATATTGAGAA-TGAGTTGTTTGAGA 607
|||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 626 CAAGAACATGTTGGAAGAGGCGGAAAGATCGAAGGATATTGA-AATTGAGTTGTTTGAGA 684
Query 608 CGAATTCGGATGTTGAGATGTTGGAAATACAGCTAAAGCTTTTCAAGAAAATGGAGAGGA 667
||| | ||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 685 CGAGTACGGATGTTGAGATGTTGGAAACACAGTTAAAGCTTTTCAAGAAAATGGAGAGGA 744
Query 668 GAGTTCAGGGGAGAG--A-CAGTAGCATGTCGAGATCAAACCGGTCTTTTGGAAGAGGGA 724
||||||||||||||| | ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 745 GAGTTCAGGGGAGAGATAGTAGTAGTATGTCGAGATCAAACCGTTCTTTTGGAAGAGGGA 804
Query 725 AGTATAGTTTATCGGTGCTGAAAGAAGTGACTGAAGCGACTGAAGCGAAAAAGGAGGAGC 784
|||||||||||||||| |||||||||||||||||| | ||| | |||||||| |
Sbjct 805 AGTATAGTTTATCGGTTTTGAAAGAAGTGACTGAAG-G---GAA--G---AAGGAGGAAC 855
Query 785 TTGCTTCTGTTAATGTAGAAATCTTTAGGATCATGACGGTAATGGATGCGTTGAGGGATG 844
||||||||||||| ||||| ||||| ||| ||||||| |||||||||||||||||| |||
Sbjct 856 TTGCTTCTGTTAAAGTAGAGATCTTCAGGGTCATGACAGTAATGGATGCGTTGAGGAATG 915
Query 845 AGATTATTCGAG-C-GGAAGATGAAATAGCTCGACTTGAAAAAATCTTAAGGAAAGATGA 902
||||||| |||| | || ||||||| |||| | |||| ||||||||| ||| |||||||
Sbjct 916 AGATTATCCGAGCCAGG--GATGAAACAGCTTGCCTTGGAAAAATCTTGAGGGAAGATGA 973
Query 903 TGTTAAGATTCAGAAGCTTAACTCGAAGATGCTTATCGAAAGATCGAAGTTGGAAGCAGT 962
|||||||||| |||| || ||||| ||||| |||||||||| |||||||||||||| ||
Sbjct 974 TGTTAAGATTGAGAAACTCAACTCAAAGATTCTTATCGAAAAATCGAAGTTGGAAGTGGT 1033
Query 963 TTCTATTGCCGAAGAAAGAATTAGCTCGCTTGCTGACAATTTATTTGGTTCGCTTGAGAA 1022
||||| ||||||||||| |||||||| |||||||| ||||| ||||||||||||||||
Sbjct 1034 ATCTATCGCCGAAGAAAGGATTAGCTCTCTTGCTGAGAATTTCGTTGGTTCGCTTGAGAA 1093
Query 1023 GTTAAAGAAAAGTAGGAAA-GCTGCAAAGAAAGAGGAGTT-TTTTCTCAAAGATGAGAAG 1080
| |||||||||||| |||| |||||||||||||||||||| ||| ||||||| ||||||
Sbjct 1094 GATAAAGAAAAGTA-GAAATGCTGCAAAGAAAGAGGAGTTCCTTT-TCAAAGAAGAGAAG 1151
Query 1081 ACGGTTACAAAGGCGGAAACACAGAAAACCAAAATCGAAATAGATAAAAAAGAAAGAGAA 1140
||||||||||||||||||||||||||||||||| | || ||||||||||| ||||| |||
Sbjct 1152 ACGGTTACAAAGGCGGAAACACAGAAAACCAAACTTGATATAGATAAAAAGGAAAGCGAA 1211
Query 1141 CTGATTTCAAAGTTGGATGAGCTTGAAAAAGTGAAGCACACTGAGGGTTTAGTGCTTGAG 1200
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1212 CTGAATTCAAAGTTGGATGAGCTTGAAAAAGTGAAGCACACTGAGGCTTTAGTGCTTGAG 1271
Query 1201 AAGCTTGAGA-CTCTAGTAGAAGACACGATGGAGAGTCGCGAAATGGAGTCTGAGCATTG 1259
|||||||| | || |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1272 AAGCTTGA-ATCTTTAGTAGAAGACATGATGGAGAGTCGCGAAATGGAGTCTGAGCATTG 1330
Query 1260 TTCAACAATCACAATCTCGAGGTTTGAGTACGAGTATTTGAGTAAACATGCTTCTCAAGC 1319
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1331 TTCAACAATCACTATCTCGAGGTTTGAGTACGAGTATTTGAGTAAACATGCTTCACAAGC 1390
Query 1320 AGAAGAAACCGCAGTGAAGAAAGTTGCAGCAGCAGAGGCATGGGTGGAAGCACTCAAGGT 1379
||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1391 GGAAGAAACCGCAGAGAAGAAAGTTGCAGCAGCAGCGGCGTGGGTGGAAGCACTCAAGGC 1450
Query 1380 TAGCACCAAATCGGTTCTTCTGAAGTCGGATACTTTGATGAGAGAAAGTGAAATGATGAG 1439
|||||| |||||| |||| ||||| |||| ||||||||||||||||||||||||| ||
Sbjct 1451 TAGCACAAAATCGTTTCTGATGAAGACGGAAACTTTGATGAGAGAAAGTGAAATGACGAA 1510
Query 1440 AGTGGAAGAAGAGAAAGAATTGTTTAGGATGGAAAGGTCGTTGTCGACGAAGAGATTGAT 1499
|| ||||||||||| |||| ||||||||||||||||||| |||||||||||||||||| |
Sbjct 1511 AGCGGAAGAAGAGAGAGAAGTGTTTAGGATGGAAAGGTCATTGTCGACGAAGAGATTGGT 1570
Query 1500 GGAGGGTGAGATTCAGAAGTTTAAGGAG-AACTCGGAAACCAAAGGCTATATTTCTCCCA 1558
||||||||||||||||||| ||||| || ||||||||| | ||||||||||||||||||
Sbjct 1571 GGAGGGTGAGATTCAGAAGATTAAG-AGGAACTCGGAAGCTGAAGGCTATATTTCTCCCA 1629
Query 1559 AACCAGATGGAAAATTCACACCGGTACAACGTGGGAAGCCAAGAAGATATTCATCTGCAG 1618
|||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| |
Sbjct 1630 AACCAGTTGGAAAATTCACACCGGTCCAACGTGGGAAGCCAAGAAGATACTCATCTGTTG 1689
Query 1619 GAACTCCAACTTTCTTTGTAATCAAGAAGAAAAAGAAAATTCCACGCTTGGCCAAGTTTT 1678
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1690 GAACTCCAACTTTCTTTGTAATCAAGAAGAAAAAGAAAGTTCCACGCTTGGCCAAGTTCT 1749
Query 1679 TTAGTCGAAAAAGTTAA 1695
| ||||| | |||||||
Sbjct 1750 TCAGTCGCAGAAGTTAA 1766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83784709605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5