BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356368
Length=3528
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46330.1 | Symbols: FLS2 | Leucine-rich receptor-like protei... 4566 0.0
> AT5G46330.1 | Symbols: FLS2 | Leucine-rich receptor-like protein
kinase family protein | chr5:18791736-18795546 FORWARD LENGTH=3727
Length=3727
Score = 4566 bits (2472), Expect = 0.0
Identities = 3201/3552 (90%), Gaps = 54/3552 (2%)
Strand=Plus/Plus
Query 1 ATGAAGTTACTCTCAGAGACCTTTCTGATATTAACTCTCACTTTCTTCTTCTTTGGCTTT 60
||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| ||
Sbjct 67 ATGAAGTTACTCTCAAAGACCTTTTTGATATTAACTCTCACCTTCTTCTTCTTTGGCATT 126
Query 61 GCACTAGCGAAACAGAGCTTTGAACCAGAGATTGAAGCTTT-AAGATCCTTCAAGAGTGG 119
|||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||
Sbjct 127 GCACTAGCGAAACAGAGCTTTGAACCAGAGATCGAAGCTTTGAA-ATCCTTCAAGAATGG 185
Query 120 CATTTCCATCGACCCTTTAGGAGTATTGTCGGATTGGACCATCACCGGTTCGGTACGACA 179
||||||| |||||||||||||||||| || ||||||||||||| ||||||| |||||||
Sbjct 186 TATTTCCAACGACCCTTTAGGAGTATTATCAGATTGGACCATCATCGGTTCGTTACGACA 245
Query 180 CTGCAATTGGACCGGAATCACCTGCGATAGTACCGGCCACGTTGTCTCTGTTTCCTTGCT 239
||| |||||||||||||||||||||||||||||||| || || ||||| |||||||||||
Sbjct 246 CTGTAATTGGACCGGAATCACCTGCGATAGTACCGGACATGTAGTCTCGGTTTCCTTGCT 305
Query 240 GGAGAAGCAACTTGAAGGTGTTCTGTCCCCAGCCATAGCAAATCTCACCTATCTCCAGGT 299
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 306 GGAGAAGCAACTTGAAGGTGTTCTGTCTCCAGCCATAGCGAATCTCACCTATCTCCAGGT 365
Query 300 TCTTGATCTCACTTCAAATAATTTTACCGG-AGAAATACCGGCTGAAATCGGAAAGTTAA 358
|||||||||||||||||||| ||||||||| | |||||||||||||||| ||||||||||
Sbjct 366 TCTTGATCTCACTTCAAATAGTTTTACCGGCA-AAATACCGGCTGAAATAGGAAAGTTAA 424
Query 359 CCGAGCTTAACCAGCTTATTCTTTA-CTCAAACTATTTCTCTGGTTCGATTCCTTCTGAA 417
|||||||||||||||||||||| || || ||||||||||||||||||||||||||||| |
Sbjct 425 CCGAGCTTAACCAGCTTATTCTGTACCT-AAACTATTTCTCTGGTTCGATTCCTTCTGGA 483
Query 418 ATTTGGGAACTTAAGAATCTTATGTCTCTTGATCTGAGAAATAATTTGTTAACCGGTGAT 477
|| ||||| ||||||||| || | | ||||||||| |||||||||||||| ||||||||
Sbjct 484 ATCTGGGAGCTTAAGAATATTTTCTATCTTGATCTTAGAAATAATTTGTTGTCCGGTGAT 543
Query 478 GTTCCTAAAGCAATTTGCAAAACTAGAACTTTGGTAGTAG-TAGGAGTTGGA-AACAACA 535
|||||| | | ||| |||||||| || |||||||| | | | || ||| || ||||||
Sbjct 544 GTTCCTGAGGAAATCTGCAAAACCAGTTCTTTGGTA-TTGATTGG-GTTTGATTACAACA 601
Query 536 ACTTAACCGGTAATATACCAGATTGCTTAGGAGATTTGGTTCATCTAGAGGTGTTTGTAG 595
|||||||||| || |||||||| ||||||||||||||||||||||| | |||||||||
Sbjct 602 ACTTAACCGGGAAAATACCAGAATGCTTAGGAGATTTGGTTCATCTCCAAATGTTTGTAG 661
Query 596 CAGATATTAACCGGCTT-AGTGGTTCGATTCCGGTAACAGTTGGTACTTTGGTTAATCTG 654
||| | ||||| || | |||||||||||||||| || |||||||| ||| |||| |
Sbjct 662 CAGCTGGTAACC-ATTTAACTGGTTCGATTCCGGTATCAATTGGTACTCTGGCTAATTTA 720
Query 655 ACGAATTTAGACCTGAGTGGTAACCAGTTAACCGGTAGAATACCAAGAGAGATAGGAAAT 714
||| ||||||||||||||||||||||||||||||| | |||||| ||||| | ||||||
Sbjct 721 ACGGATTTAGACCTGAGTGGTAACCAGTTAACCGGAAAAATACCGAGAGATTTTGGAAAT 780
Query 715 CTCTTGAACATACAGGCTCTCGTTCTATTTGATAACTTGTTGGAAGGAGAAATACCGGCT 774
||||||||| ||||| |||||||| || ||| ||||||||||||||||| ||||| |||
Sbjct 781 CTCTTGAACTTACAGTCTCTCGTTTTAACTGAAAACTTGTTGGAAGGAGATATACCAGCT 840
Query 775 GAGATCGGAAACTGCACGAGCTTGATCGACCTTGAGCTGTACGGTAACCAGTTAACCGGG 834
||||||||||||||| |||||||| || | |||||||| |||| ||||||||||||||||
Sbjct 841 GAGATCGGAAACTGCTCGAGCTTGGTCCAACTTGAGCTTTACGATAACCAGTTAACCGGG 900
Query 835 CGAATACCAGCTGAACTAGGGAATTTGGTTCAGCTGGAAGCCCTCCGGTTATACGGGAAC 894
||||||||||||| |||||||||||||||||||| |||| |||||| ||||| ||||
Sbjct 901 AAAATACCAGCTGAATTAGGGAATTTGGTTCAGCTGCAAGCACTCCGGATATACAAGAAC 960
Query 895 AACCTCAATTCCTCACTTCCATCCTCATTGTTTCGGTTAACGC-GTTTAAGATATCTGGG 953
|| || | ||| ||| ||||||| |||||||| |||||||| | | |||| || ||||
Sbjct 961 AAACTTACTTCTTCAATTCCATCTTCATTGTTCCGGTTAACTCAG-TTAACCCATTTGGG 1019
Query 954 ATTATCAGAAAACCAGTTGGTTGGACCAAT-TCCCGAAGAAATCGGTTCTCTCAAGTCAC 1012
|||||||||||||| ||||||||||| || | | ||||||||||||| ||| ||||||
Sbjct 1020 GTTATCAGAAAACCATTTGGTTGGACCGATAT-CAGAAGAAATCGGTTTTCTTGAGTCAC 1078
Query 1013 TTCAAGTCCTAACGCTCCATTCCAACAACTTAACTGGAGAGTTTCCACAGTCCATCACAA 1072
|| ||||||| || || |||||||||||||| || |||||||||||||||||||||||||
Sbjct 1079 TTGAAGTCCTCACACTTCATTCCAACAACTTCACAGGAGAGTTTCCACAGTCCATCACAA 1138
Query 1073 ACTTGAGGAACTTGACAGTGATGACGATGGGGTTCAATTATATTTCCGGTGAGCTCCCAG 1132
||||||||||||||||||| | ||| ||||||||||| ||||||||||||||||||| |
Sbjct 1139 ACTTGAGGAACTTGACAGTCCTAACGGTGGGGTTCAATAATATTTCCGGTGAGCTCCCGG 1198
Query 1133 CGGATCTAGGGCTTCTTACAAACCTTAGAAACCTTTCAGCGCACGACAATCATCTTACCG 1192
|||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||
Sbjct 1199 CGGATCTAGGGCTTCTTACAAACCTTCGGAACCTTTCAGCGCACGACAATCTTCTTACCG 1258
Query 1193 GACCAATACCTTCTAGCATAAGTAACTGCACCGGTCTTAAACTCCTGGACCTGTCTTTTA 1252
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1259 GACCAATACCTTCCAGCATAAGTAACTGCACCGGTCTTAAACTCCTGGACCTGTCTCACA 1318
Query 1253 A-CAAGATGACTGGCAAGATTCCGTGGGGTTTAGGAAGGCTGAATCTTACGGCTC-TTTC 1310
| ||| ||||||||| |||| ||| ||||||| |||||| |||||||||| | || ||||
Sbjct 1319 ACCAA-ATGACTGGCGAGATCCCGCGGGGTTTCGGAAGGATGAATCTTAC-GTTCATTTC 1376
Query 1311 TCTTGGGCCGAATCGGTTT-ACCGGCGAAATTCCAGATGATATCTTCAACTGTTCAAACA 1369
| ||||| ||||| ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1377 TATTGGGAGGAATC-ATTTCACCGGTGAAATTCCAGATGATATCTTCAACTGTTCAAACT 1435
Query 1370 TGGAAACCCTTAATCTGGCCGGGAACAACTTAACAGGAACGCTCAAGCCATTCATTGGAA 1429
||||||| |||| | |||| | ||||||||||||||||| ||||||||||| ||||| |
Sbjct 1436 TGGAAACTCTTAGTGTGGCAGATAACAACTTAACAGGAACTCTCAAGCCATTAATTGGGA 1495
Query 1430 AGCTT-AAGAAACTCAGGATTTTTCAAGTGTCGTCTAACTCTCTCACAGGAAAGATTCCG 1488
||||| || |||||||||||||| ||||| || | |||||||||||| ||| ||||||
Sbjct 1496 AGCTTCAA-AAACTCAGGATTTTGCAAGTTTCATATAACTCTCTCACTGGACCGATTCCT 1554
Query 1489 GGAGAGATCGGGAATCTGAGAGAGTTG-ATACTCTTGTATCTTCATTCTAATCGTTTCAC 1547
|||| ||||||||||||| ||| ||| ||| ||||||| ||||| |||||| |||||||
Sbjct 1555 CGAGAAATCGGGAATCTGAAAGATTTGAATA-TCTTGTACCTTCACTCTAATGGTTTCAC 1613
Query 1548 AGGGATAATCCCGAGGGAGATATCAAATCTCACTCTCCTCCAGGGGCTTGGGCTGCATAG 1607
||||| ||||||||| ||||| || ||||||||||||||||||||||| || || ||
Sbjct 1614 AGGGAGAATCCCGAGAGAGATGTCGAATCTCACTCTCCTCCAGGGGCTAAGGATGTATTC 1673
Query 1608 AAATGGTCTTGAAGGTCCAATTCCTGAAGAAATGTTTGACATGATGCAACTTTCAGAGCT 1667
||||| ||||||||||||||||||||||||||||||||| |||| || ||| |||| ||
Sbjct 1674 AAATGATCTTGAAGGTCCAATTCCTGAAGAAATGTTTGATATGAAGCTACTCTCAGTTCT 1733
Query 1668 TGAGCTATCCAGCAACAAATTCTCAGGTCCAATACCTGCCTTGTTCTCGAAGCTACAATC 1727
||| || |||| ||||||||||||||||| ||| |||||||||||||| ||||| ||||
Sbjct 1734 TGATCTTTCCAACAACAAATTCTCAGGTCAAATTCCTGCCTTGTTCTCCAAGCTTGAATC 1793
Query 1728 GCTTACCTACTTAG-GTCTACACGGAAACAAGTTCAACGGGTCTATCCCTGCAAGCCTTA 1786
|||||||||||| | |||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 1794 GCTTACCTACTT-GAGTCTTCAAGGAAACAAATTCAACGGGTCTATCCCTGCAAGCCTTA 1852
Query 1787 AGTCACTTTCGCTTCTCAACACATTCGATATCTCCGACAATCTTCTCACCGGAACCATCC 1846
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1853 AGTCGCTTTCGCTTCTCAACACATTCGATATCTCCGACAATCTTCTCACTGGAACCATCC 1912
Query 1847 CT-GAGGAGCTGTTATCTTCGATGAAAAACATGCAGCTTTACCTCAACTTCTCAAACAAC 1905
|| || ||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1913 CTGGA-GAGCTGTTAGCTTCTTTGAAAAACATGCAGCTTTACCTCAACTTCTCAAACAAC 1971
Query 1906 TTCTTGACTGGAACCATCTCC-AACGAGCTTGGCAAA-CTTGAAATGGTTCAAGAAATCG 1963
|| ||||||||||||||| || || |||||||| ||| ||||||||||||||||||||||
Sbjct 1972 TTGTTGACTGGAACCATC-CCAAAGGAGCTTGG-AAAGCTTGAAATGGTTCAAGAAATCG 2029
Query 1964 ACTTTTCGAACAATCTCTTTTCCGGGTCTATTCCAATATCGTTAAAGGCCTGCAAAAATG 2023
|| |||| |||||||||||||| ||||||||||||| ||| ||| |||||||||||||||
Sbjct 2030 ACCTTTCAAACAATCTCTTTTCTGGGTCTATTCCAAGATCTTTACAGGCCTGCAAAAATG 2089
Query 2024 TGTTCACACTGGATTTTTCGCGGAACAATATCTCGGGTCAGATCCCAGGTGAAGTCTTCC 2083
||||||||||||||||||||| ||||||| |||||||||| || |||| |||||||||
Sbjct 2090 TGTTCACACTGGATTTTTCGCAGAACAATCTCTCGGGTCATATACCAGATGAAGTCTT-- 2147
Query 2084 ACCAAGGAGGCATGGATATGATCATAAGCTTGAACCTTTCAAGAAACAGTCTCTCTGGTG 2143
|| | |||||||||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 2148 -CC-A--AGGCATGGATATGATCATAAGCTTGAACCTTTCAAGGAACAGTTTCTCTGGAG 2203
Query 2144 GAATCCCTGAGGGCTTCGGGAACTTGACGCATTTGGTCTCCTTGGATCTTTCTAGTAACA 2203
||||||| || ||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 2204 AAATCCCTCAGAGCTTCGGGAACATGACGCATTTGGTCTCCTTGGATCTCTCTAGTAACA 2263
Query 2204 ATCTCACAGGTGAAATTCCAGAGAGTCTCGCCAATCTTTCGACTCTGAAACATCTCAGAC 2263
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2264 ATCTCACTGGTGAAATTCCAGAGAGTCTCGCCAATCTTTCGACTCTGAAACATCTCAAAC 2323
Query 2264 TAGCTTCAAACCACCTCAAAGGCCATGTTCCTGAATCCGGTGTGTTCAAAAACATCAACG 2323
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2324 TAGCTTCAAACAACCTCAAAGGCCATGTTCCTGAATCCGGGGTGTTCAAAAACATCAACG 2383
Query 2324 CGTCTGATCTGATGGGAAACACAGATCTCTGTGGCAGAAAGAAGCCTCTCAAGCCATGTA 2383
| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 2384 CCTCTGATCTAATGGGAAACACAGATCTCTGTGGTAGCAAGAAGCCTCTCAAGCCATGTA 2443
Query 2384 TGATCAAGAAGAAGTCGAGCCACTTCTCGAAGAGAACCAGAATCATCGTGATTGTTCTTG 2443
||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 2444 CGATCAAGCAGAAGTCGAGCCACTTCTCGAAGAGAACCAGAGTCATCCTGATTATTCTTG 2503
Query 2444 GATCAGCCGCGGCTCTTCTTCTTGTCCTGCTTCTTGTTCTGTTTCTCACCTGTTACAAGa 2503
||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 2504 GATCAGCCGCGGCTCTTCTTCTTGTCCTGCTTCTTGTTCTGATTCTAACCTGTTGCAAGA 2563
Query 2504 aaaaggaaaaaaaGATAGAAAACTCATCAGAGTCTTCATTACCAAATTTGGATTCAGCTC 2563
|||| ||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 2564 AAAAAGAAAAAAAGATTGAAAATTCATCAGAGTCCTCATTACCGGATTTGGATTCAGCTC 2623
Query 2564 TGAAGCTGAAGAGATTCGATCCAAAAGAGTTGGAACAAGCAACAGATTCTTTCAACAGTG 2623
|||| ||||||||||| || |||||||||||||| |||||||||||||| ||||||||||
Sbjct 2624 TGAAACTGAAGAGATTTGAACCAAAAGAGTTGGAGCAAGCAACAGATTCATTCAACAGTG 2683
Query 2624 CTAACATCATTGGTTCAAGCAGCTTAAGCACAGTGTACAAAGGTCAGCTAGTAGATGGGA 2683
| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2684 CCAACATCATTGGCTCAAGCAGCTTAAGCACAGTGTACAAAGGTCAGCTAGAAGATGGGA 2743
Query 2684 CAGTGATCGCAGTAAAAGTATTGAATCTGAAGCAATTCTCTGCAGAATCAGATAAATGGT 2743
||||||| |||||||||||||||||||| ||| ||||||||||||||||||| || ||||
Sbjct 2744 CAGTGATTGCAGTAAAAGTATTGAATCTAAAGGAATTCTCTGCAGAATCAGACAAGTGGT 2803
Query 2744 TCTACACAGAAGCCAAAACATTGAGCCAACTAAAACATCGAAACCTGGTGAAGATCTTAG 2803
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2804 TCTACACAGAAGCTAAAACATTGAGCCAACTAAAACATCGAAACCTGGTGAAGATCTTAG 2863
Query 2804 GGTTTGCTTGGGAAAGCGGCAAAATGAAAGCTTTAGTGCTTCCATTTATGGAGAATGGAA 2863
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2864 GGTTTGCGTGGGAAAGCGGCAAAACGAAAGCTTTAGTGCTTCCATTTATGGAGAATGGAA 2923
Query 2864 GCTTGGAGGACACGATTCACGGCTCTGCTA-CACCGATCGGGTCG-TTATCAGAGAGAAT 2921
|||||||||||| |||||||||||||| | ||||||| |||||| || | ||| | |||
Sbjct 2924 ACTTGGAGGACACCATTCACGGCTCTGC-AGCACCGATTGGGTCGCTT-TTAGAAAAAAT 2981
Query 2922 AGATCTTTGTGTTCATATCGCAAGCGGAATCGATTATCTTCATTCTGGATTTGG-TTTCC 2980
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 2982 CGATCTTTGTGTTCATATCGCAAGCGGAATCGATTATCTTCATTCTGGATATGGTTTTCC 3041
Query 2981 CAATTGTTCATTGTGATCTGAAGCCAGCAAATATACTCCTCGACAGTGATCGTGTTGCTC 3040
| || ||||||||||||||||||||||| ||||||||||| |||||||| || |||||||
Sbjct 3042 C-ATCGTTCATTGTGATCTGAAGCCAGCTAATATACTCCTTGACAGTGACCGCGTTGCTC 3100
Query 3041 ACGTAAGCGATTTCGGAACTGCTCGAATTCTAGGTTTCCGTGAAGATGGAAGCACCACAG 3100
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 3101 ACGTAAGCGATTTTGGAACTGCTCGGATTCTAGGTTTCCGCGAAGATGGAAGCACCACAG 3160
Query 3101 CTTCTAC-TGCAGCTTTCGAGGGCACAATTGGATACTTAGCTCCAGAGTTTGCTTATATG 3159
|||| || | |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3161 CTTCAACAT-CAGCCTTCGAGGGTACAATTGGATACTTAGCTCCAGAGTTTGCTTATATG 3219
Query 3160 AGCAAAGTGACAACAAAAGCCGATGTATTCAGCTTCGGGATCATAATGATGGAGCTAATG 3219
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3220 AGGAAAGTGACAACAAAAGCCGATGTATTCAGCTTCGGGATCATAATGATGGAGCTGATG 3279
Query 3220 ACGAGACAGAGACCAACTTCGTTGAATGATGAAAAGTCACAAGGCATGACTTTGCGTCAA 3279
|||| |||||||||||||||||||||||||||| | ||||||| |||||||||||| |||
Sbjct 3280 ACGAAACAGAGACCAACTTCGTTGAATGATGAAGATTCACAAGACATGACTTTGCGCCAA 3339
Query 3280 TTGGTGGAGAAATCAATTGGAGATGGAACAGAAGGGATGATTAGGGTTCTTGAT-TCGGA 3338
|||||||||||||| |||||| |||||| | |||||||| |||||||||||||| | |||
Sbjct 3340 TTGGTGGAGAAATCGATTGGAAATGGAAGAAAAGGGATGGTTAGGGTTCTTGATAT-GGA 3398
Query 3339 ACTCGGGGACGCTATTGTTACTC-GCAAACAGGAAGAGGCCATTGAAGA-TTTGTTGAAG 3396
|||||||||| |||||||| ||| | |||||||||||||| |||||||| ||| |||||
Sbjct 3399 ACTCGGGGACTCTATTGTTTCTCTG-AAACAGGAAGAGGCTATTGAAGACTTT-CTGAAG 3456
Query 3397 CTTTGTTTGTTCTGTACAAGCTCTAGACCTGAAGATCGACCTGATATGAACGAGATTCTT 3456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3457 CTTTGTTTGTTCTGTACAAGCTCTAGACCTGAAGATCGACCTGATATGAACGAGATTCTT 3516
Query 3457 ATACAGCTGATGAAAGTTAGAGGCAAAGCGAACTCATTTCAAGAAGATCGTAACGAGGAT 3516
| ||| ||||||||| |||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 3517 ACACATCTGATGAAACTTAGAGGCAAAGCGAATTCATTTCGAGAAGATCGTAACGAGGAT 3576
Query 3517 CGAGAAGTTTAG 3528
||||||||||||
Sbjct 3577 CGAGAAGTTTAG 3588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 175634467443
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5