BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356702
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43840.1 | Symbols: AT-HSFA6A, HSFA6A | heat shock transcrip... 1192 0.0
> AT5G43840.1 | Symbols: AT-HSFA6A, HSFA6A | heat shock transcription
factor A6A | chr5:17625437-17626364 REVERSE LENGTH=849
Length=849
Score = 1192 bits (645), Expect = 0.0
Identities = 804/875 (92%), Gaps = 34/875 (4%)
Strand=Plus/Plus
Query 1 ATGGAATATAACCTTCCACTTCCATTAGAGGGTCTCAAAGAAACAG-GACCAGCTGCTTT 59
||||| |||||||||||| ||||||||||||||||||||||||| | |||| | |||||
Sbjct 1 ATGGATTATAACCTTCCAATTCCATTAGAGGGTCTCAAAGAAAC-GCCACCAACGGCTTT 59
Query 60 CTTGACGAAAACCTACAACATAGTTGAGGATTCATGCACAAACAACATAGTTTCATGGAG 119
|||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 60 CTTGACGAAAACATACAACATAGTGGAGGATTCAAGCACAAACAACATAGTTTCATGGAG 119
Query 120 CAGAGACAACAACAGCTTCATTGTCTGGGAACCAGAGACTTTTGCCCTAATTTGTCTCCC 179
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 120 CAGAGACAACAACAGCTTCATTGTTTGGGAACCAGAGACTTTTGCCCTAATTTGCCTCCC 179
Query 180 TAGATGCTTTAAGCACAACAATTTCTCCAGCTTTGTTAGACAACTCAATACTTATGGGTT 239
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 TAGATGCTTTAAGCACAATAATTTCTCCAGCTTTGTTAGACAGCTCAATACTTATGGGTT 239
Query 240 TAAGAAGATTGATACAGAGAGATGGGAGTTTGCAAATGAGTATTTTCTGAAGGGAGAAAG 299
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||
Sbjct 240 TAAGAAGATTGATACAGAGAGATGGGAATTTGCAAATGAGCATTTTCTGAAGGGAGAGAG 299
Query 300 ACATCTTCTTAAGAACATCAAGAGAAGAAAGACATCATCTCAAACGCAAACGCAGTCGCT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 GCATCTTCTTAAGAACATCAAGAGAAGAAAGACATCATCTCAAACGCAAACGCAGT--C- 356
Query 360 AGAAGGCGATAGAGTTCGACTGGAAGGAGAGATCCATGAGCTGAGAAGAGACAGAGTGGC 419
|| | | ||||||||||||||||||||| ||||||||||| ||||
Sbjct 357 -----GC--------T--A---GAAGGAGAGATCCATGAGCTGCGAAGAGACAGAATGGC 398
Query 420 TTTAGAATTAGAACTAGTGAGACTGAGACGAAAACAAGAAAGCGTGAAGACGTATCTGCA 479
||||||| ||||||| || |||||| ||||||||||||||||||||||||| ||||||||
Sbjct 399 TTTAGAAGTAGAACTGGTTAGACTGCGACGAAAACAAGAAAGCGTGAAGACATATCTGCA 458
Query 480 TTTGATGGAAGAGAAACTGAAAGTCACAGAAGTGAAGCAAGAAATGATGATGAATTTCTT 539
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 459 TTTGATGGAAGAGAAACTGAAAGTCACAGAAGTAAAGCAAGAAATGATGATGAATTTCTT 518
Query 540 GCTAAAGAAGATTAAGAAACCGAGTTTTTTGCAGAGCTTAAGGAAACGTAAGCTGCAAGG 599
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 519 GCTAAAGAAGATTAAGAAACCGAGTTTTTTACAGAGCTTAAGGAAACGTAATCTGCAAGG 578
Query 600 AATCAAGAATCGAGAGCAAA-GACAAGAGGTGATCTCAAGCCATGGTGTTGAGGATCATG 658
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 579 AATCAAGAATCGAGAGCAAAAG-CAAGAGGTGATCTCAAGCCATGGTGTTGAGGATAATG 637
Query 659 -ATACGTTTGTTAAAGCTGAGCCGGAAGAGTATGGTGATGACATCGGTGATCAATTTGGA 717
| | |||||||||||||||||| |||||||||||||||||||||| |||||||| ||||
Sbjct 638 GAAA-GTTTGTTAAAGCTGAGCCAGAAGAGTATGGTGATGACATCGATGATCAATGTGGA 696
Query 718 GGTGTTTTT-AGTTATGGCGATGAGCTTCACATAGCTTCAATGGAGGATCAAGGACAAGA 776
||||| ||| | |||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 697 GGTGTGTTTGA-TTATGGTGATGAGCTTCACATAGCTTCAATGGAGCATCAAGGACAAGG 755
Query 777 AGGAGG-TGAAATGGAAATGGATAGTGAAGGAATTTGGAAGGGTTTCGTGTTGAGTGAGG 835
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 -GGAGGATGAAATTGAAATGGATAGTGAAGGAATTTGGAAGGGTTTCGTGTTGAGTGAGG 814
Query 836 AG-A--TGTGTGATTTAGGGGAACATTTTATATAA 867
|| | |||||||||||| ||||||||||||||||
Sbjct 815 AGGAGATGTGTGATTTAGTGGAACATTTTATATAA 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5