BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg357025

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48220.1 | Symbols:  | Aldolase-type TIM barrel family prote...   845    0.0  


> AT5G48220.1 | Symbols:  | Aldolase-type TIM barrel family protein 
| chr5:19549798-19552267 FORWARD LENGTH=1493
Length=1493

 Score =  845 bits (457),  Expect = 0.0
 Identities = 574/627 (92%), Gaps = 22/627 (4%)
 Strand=Plus/Plus

Query  7    GCAATGCGTTCTCTTCAGCACTTTCCC-TCCTCCGCCATTCAACGACGGCTCTCTCAGTT  65
            ||| ||| ||||||||||| | ||||| |||||||||| ||||||||| ||||||| |||
Sbjct  142  GCACTGCTTTCTCTTCAGC-CCTTCCCTTCCTCCGCCACTCAACGACGTCTCTCTCCGTT  200

Query  66   TAACATCCACGATAAACTTACCAGACCCTCTTCTTGT-CTTCCTCTTCGTGCTCAAAAGT  124
            |||| ||||| ||| |||||||||||| ||||||| | | ||||||||||||||||||||
Sbjct  201  TAACCTCCACAATACACTTACCAGACCTTCTTCTTATGC-TCCTCTTCGTGCTCAAAAGT  259

Query  125  CTGGAATCACTGAAGGTTCCTCTGATTCGGCATTGGAGGGTAAAGTAAGTGATCTCAAGA  184
            |||||||||| ||||| |  |||||||| ||| |      |  ||  || |  || ||| 
Sbjct  260  CTGGAATCACAGAAGG-T--TCTGATTCAGCA-T------T--AG--AG-G--CTAAAG-  301

Query  185  TTAGTGAGCAAGAAGTGGGGATGTACCAGAATGAAGTAGTTGAGAGTCAGGGTATTAGGA  244
            | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct  302  TAAGTGAGCAAGAAGTGGGAATGTACCAGAATGAAGTAGTTGAGAGTCAAGGTATAAGGA  361

Query  245  TAAGGAGAAGACCACCTACTGGACCTCCATTGCATTACGTTGGACCTTTTGAGTTCCGCC  304
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  362  TAAGGAGAAGACCACCTACTGGACCTCCATTGCATTACGTTGGACCTTTTGAGTTCCGGC  421

Query  305  TCCAGAACGAGGGTAACACGCCTCGTAATATCTTGGAAGAGATCGTATGGCACAAGGATA  364
            | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  422  TTCAGAACGAGGGAAACACGCCTCGTAACATCTTGGAAGAGATCGTATGGCACAAGGATA  481

Query  365  AAGAAGTTGCTCAGATGAAAGAGAGGAAGCCTCTTTATACCTTGAAGAAGGCTCTTGATA  424
            ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct  482  AAGAAGTTGCTCAGATGAAAGAGAGAAAGCCTCTTTATAGCTTGAAGAAGGCTCTTGATA  541

Query  425  ATGTTCCTCCTGCTAAAGACTTCATTGGTGCTCTTAGATCGGCTCATCAAAGAACGGGGT  484
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  542  ATGTTCCTCCTGCTAAAGACTTCATTGGTGCTCTTAGATCGGCTCACCAAAGAACGGGGT  601

Query  485  TACCTGGTTTAATAGCTGAGGTTAAGAAAGCTTCTCCAAGCAGAGGCATCCTTAGAGAGG  544
            | |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct  602  TGCCTGGTTTAATAGCTGAGGTTAAGAAAGCTTCTCCAAGTAGAGGAATCCTGAGAGAGG  661

Query  545  ATTTTAACCCTGTTGAAATTGCACAAGCTTATGAGAAGGGTGGAGCAGCATGTCTTAGTG  604
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  662  ATTTTAACCCTGTTGAAATTGCACAAGCTTATGAGAAGGGGGGAGCAGCATGTCTTAGTG  721

Query  605  TTTTGACAGATGACAAATACTTCCAGG  631
            ||||||||||||||||||||||| |||
Sbjct  722  TTTTGACAGATGACAAATACTTCAAGG  748



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30994468699


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5