BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg357601

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G53560.1 | Symbols: ATB5-A, B5 #2, ATCB5-E, CB5-E | cytochro...   654    0.0  


> AT5G53560.1 | Symbols: ATB5-A, B5 #2, ATCB5-E, CB5-E | cytochrome 
B5 isoform E | chr5:21759367-21760578 FORWARD LENGTH=739
Length=739

 Score =  654 bits (354),  Expect = 0.0
 Identities = 388/405 (96%), Gaps = 0/405 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTTCAGATCGAAAAGTTTTAACTTTCGAAGAAGTTTCACAGCACAACAAAACTAAG  60
            ||| |||||||||| || ||| ||| ||| |||||||||||| |||||||||||||||||
Sbjct  110  ATGTCTTCAGATCGGAAGGTTCTAAGTTTTGAAGAAGTTTCAAAGCACAACAAAACTAAG  169

Query  61   GATTGTTGGCTTATTATTTCCGGCAAGGTGTATGATGTGACTCCATTCATGGATGATCAC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  170  GATTGTTGGCTTATTATTTCCGGCAAGGTGTATGATGTGACTCCATTCATGGATGATCAT  229

Query  121  CCTGGAGGCGATGAAGTCTTGTTGTCCTCAACAGGGAAAGATGCTACAAATGATTTTGAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  230  CCTGGAGGCGATGAAGTCTTGTTGTCCTCAACAGGGAAAGATGCTACAAATGATTTTGAA  289

Query  181  GACGTTGGTCACAGCGACACTGCTAGGGACATGATGGATAAATATTTCATTGGTGAGATT  240
            ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct  290  GACGTTGGTCACAGCGACACTGCAAGGGACATGATGGACAAATATTTCATTGGTGAGATT  349

Query  241  GATTCGTCTAGTGTTCCAGCAACAAGGACATATGTTGCACCGCAGCAACCAGCGTACAAC  300
            ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||
Sbjct  350  GATTCGTCTAGTGTTCCAGCAACTAGGACATACGTTGCACCACAGCAACCAGCCTACAAC  409

Query  301  CAAGACAAGACACCGGAATTCATCATCAAGATTCTTCAGTTCCTTGTTCCGATCTTGATC  360
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  410  CAAGACAAGACACCAGAATTCATTATCAAGATTCTTCAGTTCCTTGTTCCGATCTTGATC  469

Query  361  TTGGGACTGGCTCTTGTCGTCCGTCACTATACCAAGAAAGACTAG  405
            |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  470  TTGGGATTGGCTCTTGTCGTCCGTCACTATACCAAGAAAGACTAG  514



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19152012369


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5