BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg357624 Length=1416 Score E Sequences producing significant alignments: (Bits) Value AT5G53620.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 407 2e-112 > AT5G53620.1 | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 28929 Blast hits to 19542 proteins in 1425 species: Archae - 211; Bacteria - 3079; Metazoa - 14558; Fungi - 2157; Plants - 966; Viruses - 80; Other Eukaryotes - 7878 (source: NCBI BLink). | chr5:21780947-21785230 FORWARD LENGTH=2390 Length=2390 Score = 407 bits (220), Expect = 2e-112 Identities = 315/361 (87%), Gaps = 6/361 (2%) Strand=Plus/Plus Query 850 CAAGGAGCACAATATGGATCTTCTATACCGGCATCCTCTGTGAATGAACAGGCAGTGAAA 909 |||| ||||||||| ||| || | | | | |||||||||||||||||||||||||| || Sbjct 1535 CAAGTAGCACAATACGGAACTACGACAACACCATCCTCTGTGAATGAACAGGCAGTGGAA 1594 Query 910 TCTGGCAATGGAGATTATCTTGGACCCATTCACG-CAGAGAATAACTTTCAAGACATTTC 968 |||||||||||||||||| |||| | | ||| | ||||||||||||||||||||||||| Sbjct 1595 TCTGGCAATGGAGATTATAATGGATCTAATCA-GTCAGAGAATAACTTTCAAGACATTTC 1653 Query 969 TTCACAGTTCCGTGATGCGCTAAGGATAGACTC-CAATGCCTTAAATCAGAAGCCTGAGG 1027 |||||||||||||||||| |||||| | || || || | || || |||||| ||||||| Sbjct 1654 TTCACAGTTCCGTGATGCCCTAAGGCTTGATTCTCATTCCCAGAA-TCAGAAACCTGAGG 1712 Query 1028 AGACT-AATGGTCAGGTTTCAGCTGGTGAACATAATGGTGCTGGATCCATTGTGCCTGAA 1086 | ||| ||||||||||||||| ||| |||||| | ||||||| ||||||||| |||||| Sbjct 1713 A-ACTCAATGGTCAGGTTTCACCTGATGAACACAGTGGTGCTAAATCCATTGTCCCTGAA 1771 Query 1087 ACTCTAGTCTCATCCGGGAAAGCTGAGAGGAACTTAGAGAGTGCTCTTCTTGATGAAAGG 1146 ||||||||||||||||| ||| |||||||||||| |||| | ||||| || ||||||||| Sbjct 1772 ACTCTAGTCTCATCCGGAAAACCTGAGAGGAACTCAGAGTGCGCTCTGCTCGATGAAAGG 1831 Query 1147 TCGCTTTTGACATGCATCCTCTGTACTATACCAGCTGGTGGAAGAATCAGAATCAGTTCA 1206 ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 1832 TCGCTTTTGACATGCATCCTCCGTACTATACCAGCTGGTGGGAGAATCAGAATCAGTTCA 1891 Query 1207 A 1207 | Sbjct 1892 A 1892 Score = 359 bits (194), Expect = 5e-98 Identities = 325/384 (85%), Gaps = 25/384 (7%) Strand=Plus/Plus Query 414 TATCCAGAACAGTGGGAACCAATTTGAGGCTCATGGAAACAGTTCGGAAAGTGCAAACGT 473 ||| |||||||| |||||||||||||| |||||||||||||| | |||||||||||| | Sbjct 1111 TATTCAGAACAGCGGGAACCAATTTGATGCTCATGGAAACAGCGCAGAAAGTGCAAACAT 1170 Query 474 TAATGTCCATTCAAATGGAAAAAACGCAGATAATATATCATCTTTTACTTCAAGTGATGA 533 || |||||||||||||||||||| ||||||||| || |||||||||||||||| |||||| Sbjct 1171 TAGTGTCCATTCAAATGGAAAAAGCGCAGATAACATCTCATCTTTTACTTCAACTGATGA 1230 Query 534 TAGGGCTACCCAGACCAACCGTGTTGATGTG-TATCAGCTTCTC-ATCTTG-GATGCATG 590 || ||||||||||| |||||||||||||| | |||||||||| | |||||| || |||| Sbjct 1231 TAAGGCTACCCAGAACAACCGTGTTGATGGGATATCAGCTTC-CAATCTTGCGACACATG 1289 Query 591 GGTACTTCTCAAGC-GGTCAAATGACTCCTCTGCACTCTTTTATCATGCATCAACAAGAG 649 ||| | | |||||| ||||| ||||| |||||||| || ||| ||||||||||||||||| Sbjct 1290 GGTTCCT-TCAAGCTGGTCAGATGACCCCTCTGCATTCATTTGTCATGCATCAACAAGAG 1348 Query 650 ATTCCTCAGCTTGTTCAGGCTCAGGGCCCTTCACCTCATGTTGTACAATCAGTGTTGCTG 709 ||| |||||||||||||| |||||| |||||||| ||| ||| ||||||||||||||| Sbjct 1349 ATTTCTCAGCTTGTTCAGCCTCAGGTCCCTTCACAACATATTGAACAATCAGTGTTGCTA 1408 Query 710 CAGCAAAA-G-T-----T-CA-CAGAT-G--CCCAGA---C----CAGAATCATGTGCAT 750 |||||||| | | | | ||||| | | |||| | ||||||||||||||| Sbjct 1409 CAGCAAAAGGCTCAGGCTGTACCAGATAGTTCACAGATGCCTATGCAGAATCATGTGCAT 1468 Query 751 CCATCTCAAGGTGTTCATGGCTTG 774 |||||||||||||||||||||||| Sbjct 1469 CCATCTCAAGGTGTTCATGGCTTG 1492 Score = 147 bits (79), Expect = 4e-34 Identities = 118/135 (87%), Gaps = 9/135 (7%) Strand=Plus/Plus Query 277 CAGGCTGAATTGCGAGAACGTACTGAGCACTATAACCAGCTCTGGCATGGTTGTCAGAGA 336 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 935 CAGGCTGAATTGCGAGAACGTACTGAGCAGTATAACCAGCTCTGGCATGGTTGTCAGAGG 994 Query 337 CAGTGGTTTCAGTTTGTGGAGATGGAGAGATTGCATTTGCATACAGTGCAACAGCTTCAG 396 |||| || ||| ||||||||||||||||| |||| |||||||||||||||||| Sbjct 995 CAGT--TTGCAG-------AGATGGAGAGATTGCATGTGCACACAGTGCAACAGCTTCAG 1045 Query 397 CTTGAGCTTGCCAAT 411 | |||||||| ||| Sbjct 1046 CAAGAGCTTGCTAAT 1060 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69778757550 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5