BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358193
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59770.1 | Symbols: | Protein-tyrosine phosphatase-like, PT... 887 0.0
> AT5G59770.1 | Symbols: | Protein-tyrosine phosphatase-like,
PTPLA | chr5:24079392-24081216 REVERSE LENGTH=969
Length=969
Score = 887 bits (480), Expect = 0.0
Identities = 564/605 (93%), Gaps = 4/605 (1%)
Strand=Plus/Plus
Query 64 ATTTCGCTTCTGAGTATACTTAACAGCTTTTTATCGAACAAGGCGATTAATGT-TGCTTA 122
||||||||||||| ||| |||||||||||||||||||||||| ||| | || | ||||||
Sbjct 238 ATTTCGCTTCTGATTATTCTTAACAGCTTTTTATCGAACAAGACGA-TCATTTCTGCTTA 296
Query 123 CGCTTCTGCTGGATACTTGATTAGTGTGTTTCAAACTGTTGCTGTTCTTGAAGTTCTTCA 182
|||||||||||||| | |||||||| |||||||||||| |||| ||||||||||||||||
Sbjct 297 CGCTTCTGCTGGATTCCTGATTAGTCTGTTTCAAACTGCTGCTATTCTTGAAGTTCTTCA 356
Query 183 TGGAGCTATAGGAATTGTCCCTAGTGGGTTCTTGTCTCCACTGATGCAATGGAGTGGAAG 242
||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 357 TGGAGCTATTGGAATTGTCCCGAGTGGATTCTTGTCTCCACTGATGCAATGGAGTGGAAG 416
Query 243 AACCCATTTCATATTGGCTATTGTTGGACAGATCAAAGAGGTCCAGGATTCCCCATGGCT 302
||| || ||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 417 AACTCACTTCATATTGGCTATTGTTGGACAGATCAAGGAGGTCCAGGATTCGCCGTGGCT 476
Query 303 ATCAT-TAACACTTGTGGCTTGGTGTATCGGCGAGATGATCAGATATCCTCACTATGCTT 361
|| | ||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 477 GTC-TATAACACTTGTGGCTTGGTGTATCGGTGAGATGATCAGATATCCTCATTATGCTT 535
Query 362 TTACTTGCCTCGGTAGATGTCCCTATTGGCTAACCTATCTCAGGTACACGGGATTCATCA 421
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 536 TTACTTGCCTCGGTAGATGTCCCTATTGGCTAACCTACCTCAGGTACACGGGATTCATCG 595
Query 422 TCATCTATCCAACAGGACTAGTAGGCGAATTGTTGATCATGTACAAAGCACTTCCATATG 481
| || |||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 596 TGATTTATCCAACGGGACTAGTGGGTGAATTGTTGATCATGTACAAAGCACTTCCATATG 655
Query 482 TTAAAGAAACGAATCTTTACGCGAAATTCTTCTCTGTTTTCCCCTTCAGTTACTACAATT 541
||||||||| |||||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 656 TTAAAGAAAGGAATCTTTACGCTAATTTCTTCTCTGTTTTCCCCTTCAGTTACTACGATT 715
Query 542 TCCTTTGGGCCGTCCTCTTGGTGTACCCATTTATTTGGTTGAAGCTTTATCTCCAGCTTT 601
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 716 TCCTTTGGGCCGTCCTCTTGGTCTACCCATTCCTTTGGTTGAAGCTTTATCTCCAGCTTT 775
Query 602 TCAAACAAAGAAAGTCTAAGGTTGGAAAATCGGAGAAGCTTCACGGCAAGAGAAAGAGAA 661
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 776 TCAAACAAAGAAAGTCTAAGCTTGGAAAATCGAAGAAGCTTCACGGCAAGAGAAAGAGAA 835
Query 662 TGTGA 666
|||||
Sbjct 836 TGTGA 840
Score = 89.8 bits (48), Expect = 3e-17
Identities = 56/60 (93%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1 ATGTCGCCATTCGTGACGTTTTATCTCTTCACTTACAATTTTCTCCAAGCTTCTGCATGG 60
|||||||| || |||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 143 ATGTCGCCGTTTGTGAAGTTTTATCTCTTCAGTTACAATTTTCTCCAAGCTTCTGCATGG 202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5