BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358332
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7 |... 1622 0.0
> AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7
| chr5:24638775-24640600 REVERSE LENGTH=1360
Length=1360
Score = 1622 bits (878), Expect = 0.0
Identities = 1040/1114 (93%), Gaps = 27/1114 (2%)
Strand=Plus/Plus
Query 120 GTCGAATTATGGAGTGAAGGAGCTCACATGGGAAAATGGGCAATTAACCGTTCATGGTCT 179
||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct 164 GTCGAATTATGGAGTTAAAGAGCTCACATGGGAAAATGGGCAACTAACCGTTCATGGTCT 223
Query 180 AGGCGAAGAAGTCGAACCAACCACCTCGAATAACCCTATTTGGACCCAAAGTCTCAACGG 239
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 224 AGGCGACGAAGTAGAACCAACCACCTCGAATAACCCTATTTGGACTCAAAGTCTCAACGG 283
Query 240 ATGTGAGACTTTGGAGTCTGTGGTTCATCAAGCGGCTCTTCAGCAGCCAAGCAAGCTTCA 299
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 284 TTGTGAGACTTTGGAGTCTGTGGTTCATCAAGCGGCTCTACAGCAGCCAAGCAAGTTTCA 343
Query 300 GCTACAGAGTCCTATGTTAT-CTCCAAACCACAATTATGAGAGCAAGGATGGATCTTGTT 358
||| |||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 344 GCTGCAGAGTCC---G-AATGGTCCAAACCACAATTATGAGAGCAAGGATGGATCTTGTT 399
Query 359 CAAGAAAACGCGGTTATCCTCAAGAAATGGACGGTATGGACCGATGGTTCGCTGTTCAAG 418
|||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 400 CAAGAAAACGCGGTTATCCTCAAG--A---A----ATGGACCGATGGTTCGCTGTTCAAG 450
Query 419 AGGAGAGCCATAGAGTTGGTCACAGCGTGACTGCAAGTGCTAGTGGTACCAATATGTCTT 478
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 451 AGGAGAGCCATAGAGTTGGCCACAGCGTCACTGCAAGTGCGAGTGGTACCAATATGTCTT 510
Query 479 GGGCGTCTTTTGAATCTGGTCGGAGCTTGAAGACAGCTAGAACCGGAGACAGAGACTATA 538
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 GGGCGTCTTTTGAATCCGGTCGGAGCTTGAAGACAGCTAGAACCGGAGACAGAGACTATT 570
Query 539 TCCGCTCTGGATCGGAAACTCAAGATACTGAAGGAGATGAACAAGAGACTAGGGGAGAAG 598
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 571 TCCGCTCTGGATCGGAAACTCAAGATACTGAAGGAGATGAACAAGAGACAAGAGGAGAAG 630
Query 599 CAGGGAGATCTAATGGACGACGGGGACGAGCAGCAGCGATTCACAACGAGTCCGAAAGGA 658
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 CAGGTAGATCTAATGGACGACGGGGACGAGCAGCAGCGATTCACAACGAGTCCGAAAGGA 690
Query 659 GACGACGTGATAGGATAAACCAGAGGATGAGAACACTTCAAAAGCTGCTTCCTACTGCAA 718
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 691 GACGGCGTGATAGGATAAACCAGAGGATGAGAACACTTCAGAAGCTGCTTCCTACTGCAA 750
Query 719 GTAAGGCGGATAAAGTCTCGATCTTGGATGATGTGATCGAACACTTGAAACAGTTACAGG 778
||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| |
Sbjct 751 GTAAGGCGGATAAAGTCTCAATCTTGGATGATGTTATCGAACACTTGAAACAGCTACAAG 810
Query 779 CACAAGTTCAGTTTATGAGCCTAAGAGCTAATCT-GCCACAACAAATGATGATTCCGCAA 837
||||||| ||||| |||||||||||||| || || |||||||||||||||||||||||||
Sbjct 811 CACAAGTACAGTTCATGAGCCTAAGAGCCAA-CTTGCCACAACAAATGATGATTCCGCAA 869
Query 838 CTACCTCCACCCCAGTCAGTTCTcaacatccaacaccaacagcaacaacagca---gca- 893
||||||||||| ||||||||||||| ||||||||||||||| |||||||| || |||
Sbjct 870 CTACCTCCACCACAGTCAGTTCTCAGCATCCAACACCAACAACAACAACAACAACAGCAG 929
Query 894 -a-ca--a-caacaacagcagcaacagTTTCAGATGTCGTTGCTTGCAACAATGGCGCGA 948
| || | ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 930 CAGCAGCAGCAACAACAGCAGCAACAGTTTCAGATGTCGTTGCTTGCAACAATGGCAAGA 989
Query 949 ATGGGAATGGGAAGCGGAGGAAATGGTTATGGAGGTTTAGTtcctcctcctcctcctccA 1008
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 ATGGGAATGGGAGGTGGTGGAAATGGTTATGGAGGTTTAGTTCCTCCTCCTCCTCCTCCA 1049
Query 1009 CCATTGATGGTCCCTCCTATGGGTAACAGAGACTGCACCAACGGTTCTTCAGCCACTTTA 1068
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1050 CCAATGATGGTCCCTCCTATGGGTAACAGAGACTGCACCAACGGTTCTTCAGCCACATTA 1109
Query 1069 ACTGATCCGTACAGCGCCTTTTTCGCACAGACAATGAATATGGATCTCTACAATAAAATG 1128
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 TCTGATCCATACAGCGCCTTTTTCGCACAGACAATGAATATGGATCTCTACAATAAAATG 1169
Query 1129 GCTGCAGCGATCTATAGACAACAGTCTGATCAATCAACAAAGGTAAATA-CGGGCATGCC 1187
|| ||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||||||
Sbjct 1170 GCAGCAGCTATCTATAGACAACAGTCTGATCAAACAACAAAGGTAAATATCGG-CATGCC 1228
Query 1188 CTCAAGTTCTTCGAATCACGAGAAAAGAGATTAG 1221
||||||||||||||||| |||||||||||||||
Sbjct 1229 TTCAAGTTCTTCGAATCATGAGAAAAGAGATTAG 1262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5