BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358733
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65320.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1110 0.0
> AT5G65320.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:26107169-26108726 REVERSE
LENGTH=1176
Length=1176
Score = 1110 bits (601), Expect = 0.0
Identities = 766/843 (91%), Gaps = 21/843 (2%)
Strand=Plus/Plus
Query 23 CATCCTTAAGCTACGAAATCTTGGATTACTTACAAAACTTCGTCGTTTCGAACTCTGAAA 82
|||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct 133 CATCCTTAAGTTACGAAATGTTGGATTACTTTCAAAACATCGTCGTTTCGAACTCTGAAG 192
Query 83 ACGTGGCGTCACAACAAAATTCCCTTTCTTCCTCTTCTTATTCATCAGCGACACTCTCTT 142
||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 193 ACGTGGCGTCACAGCAAAATTCCATTTCGTCCTCTTCTTATTCATCAGCGACACTCTCCT 252
Query 143 GCTCCATAACAGAGGAAAAATCTCACTTAACGGAAAAGTTATCTCCTGTGCGAGAACGAT 202
|||||||||||||| |||||||||||||||| ||||||||||||||| | |||||| |||
Sbjct 253 GCTCCATAACAGAGCAAAAATCTCACTTAACTGAAAAGTTATCTCCTCTACGAGAAAGAT 312
Query 203 GTGGTTGCGGTGACGTACTGTCGCGGAAGAGGAGAAGGAGAAGTGAAAAAACGATGGAAG 262
||||||||||||| | |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 313 ATGGTTGCGGTGACTTTCTGTCGCGGAAGAGGAGAAGGAGAAGTGAAAAAACGATTGTAG 372
Query 263 ATAAAGAGTACCAAAGGATGAATCACATTGCTGTCGAGCGTAACCGGAGAAAACAGATGA 322
|||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 373 ATAAAGAGAATCAAAGGATGAATCACATTGCCGTCGAGCGTAACCGGAGAAAACAGATGA 432
Query 323 ATCATTTTCTGTCTATCCTCAAATTTATGATGCCTCTCTCTTATTCTCAACCTAATGACC 382
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 433 ATCATTTTCTGTCTATCCTCAAGTCTATGATGCCTCTCTCTTATTCTCAACCTAATGACC 492
Query 383 AAGCATCAATCATAGAAGGGACCATTAACTATGTCAAGAAGCTAGAACATCGTCTTCAAT 442
||||||||||||||||||||||||||| |||| | |||||||||||||| ||||| ||||
Sbjct 493 AAGCATCAATCATAGAAGGGACCATTAGCTATCTGAAGAAGCTAGAACAACGTCTCCAAT 552
Query 443 CACTCGAAGCCCAATTAAAAGCTACCAAACCCAATAAATCACCCAACATATTTTCCGACT 502
| ||||||||||||||||||||||| |||| |||| ||||||| || |||||||||||||
Sbjct 553 CTCTCGAAGCCCAATTAAAAGCTACTAAACTCAATCAATCACCAAATATATTTTCCGACT 612
Query 503 TCTTCATGTTCCCCCAATACTCCACC---AC--C----GCC--------T-CCTCCTC-- 542
||||||||||||| |||||||||||| || | ||| | |||||||
Sbjct 613 TCTTCATGTTCCCTCAATACTCCACCGCCACTGCCACTGCCACCGCCACTGCCTCCTCAT 672
Query 543 CC-CCTCAAGTCACTACCACCACAAGCGACTACCGGCGGTTGCTGACGTGGAGGTTACAA 601
|| |||| || ||| |||| |||||||||||| || |||||||||||||||||||||||
Sbjct 673 CCTCCTCGAGCCACCACCATCACAAGCGACTAGAGGTGGTTGCTGACGTGGAGGTTACAA 732
Query 602 TGGTAGAAAAACATATCAACATTAAAGTGTTAACAAAGACACGGCCAAGATTGCTCTTCA 661
||||||||| |||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 733 TGGTAGAAAGACATGCCAACATTAAAGTGTTAACGAAGACACAGCCAAGATTGCTCTTCA 792
Query 662 AGATTATCAATGAGTTTTACTCTTTAGGTTTAAGTACTCTTCATCTCAACCTCACAACTT 721
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 AGATTATCAATGAGTTTAACTCTTTAGGTTTAAGTACTCTTCATCTCAACCTCACAACTT 852
Query 722 CCAAAGACATGTCTCTCTTCACGTTTAGCGTAAAGGTAGAGGCAGATTGTCAATTGATGC 781
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||
Sbjct 853 CCAAAGACATGTCTCTCTTCACTTTTAGCGTCAAGGTAGAGGCAGATTGTCAATTGACGC 912
Query 782 CTTCTGGTAATGAGATCGCAAATGCGGTGCATGAAGTCGTTAAAAGAGTTCACAAGGAAA 841
|||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 913 CTTCTGGTAATGAGGTCGCAAATACGGTGCATGAAGTCGTTAGAAGAGTTCACAAGGAAC 972
Query 842 GTT 844
|||
Sbjct 973 GTT 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5