BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358770
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65670.1 | Symbols: IAA9 | indole-3-acetic acid inducible 9 ... 784 0.0
AT5G65550.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 104 2e-21
> AT5G65670.1 | Symbols: IAA9 | indole-3-acetic acid inducible
9 | chr5:26253658-26256468 FORWARD LENGTH=1624
Length=1624
Score = 784 bits (424), Expect = 0.0
Identities = 471/494 (95%), Gaps = 2/494 (0%)
Strand=Plus/Plus
Query 753 GGCACAAATTGTGGGTTGGCCTCCTGTGAGATCCTACAGGAAGAACACATTGGCCACCAC 812
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 816 GGCACAAATTGTCGGTTGGCCTCCAGTGAGATCCTACAGGAAGAACACATTGGCCACTAC 875
Query 813 TTGTAAGAATAGTGATGAAGTTGATGGGAGGCCAGGTCCTGGGAC-CATGTTCGTAAAGG 871
||||||||| ||||| ||||||||||||||||||||| ||||| | | | ||||| ||||
Sbjct 876 TTGTAAGAACAGTGACGAAGTTGATGGGAGGCCAGGTTCTGGGGCTC-TCTTCGTGAAGG 934
Query 872 TCAGTATGGATGGTGCTCCTTGTCTGAGGAAAGTTGACCTGAGGAGCTACGCTAACTACG 931
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 935 TCAGTATGGATGGTGCTCCTTATCTGAGGAAAGTTGACCTGAGGAGCTACACTAACTACG 994
Query 932 GGGAGCTTTCTTCAGCCTTGGAGAAAATGTTCACCACTCTCACTCTAGGTCAATGTGGAT 991
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 995 GGGAGCTTTCTTCAGCCTTGGAGAAAATGTTCACCACTTTCACTCTTGGTCAATGTGGAT 1054
Query 992 CTAATGGAGCTGCTGGGAAGGATATGCTTAGTGAGACCAAGCTTAAGGATTTTTTAAATG 1051
||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||
Sbjct 1055 CTAATGGAGCTGCTGGGAAGGATATGCTTAGTGAGACCAAGCTCAAGGATCTTTTGAATG 1114
Query 1052 GAAAAGACTATGTGCTCACTTATGAGGATAAGGATGGGGACTGGATGCTTGTTGGAGATG 1111
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1115 GAAAAGACTATGTGCTCACTTATGAGGATAAGGATGGTGACTGGATGCTTGTTGGAGATG 1174
Query 1112 TTCCATGGGAGATGTTTATTGATGTCTGCAAGATGCTGAAGATAATGAAAGGATGTGATG 1171
|||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1175 TTCCGTGGGAGATGTTTATTGATGTCTGCAAGAAGCTGAAGATAATGAAAGGGTGTGATG 1234
Query 1172 CTATTGGGTTAGCTGCAGCTCCGAGAGCAATGGAGAAATCGAAGATGAGAGCTCAAAAGA 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1235 CTATTGGGTTAGCTGCAGCTCCGAGAGCAATGGAGAAATCGAAGATGAGAGCTTAAAAGA 1294
Query 1232 TGGAACATGACAAA 1245
||||||||||||||
Sbjct 1295 TGGAACATGACAAA 1308
> AT5G65550.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr5:26198304-26199827 REVERSE LENGTH=1524
Length=1524
Score = 104 bits (56), Expect = 2e-21
Identities = 60/62 (97%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 671 AGACAGACCATGGCCGAGCCAAAACCGAAGCTTCATGTTGCAGTGTTCTCATGGTTAGCT 730
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 9 AGAGAGACCATGGCCGAGCCAAAACCGAAGCTTCATGTTGCAGTGTTCCCATGGTTAGCT 68
Query 731 TT 732
||
Sbjct 69 TT 70
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62851082340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5