BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358841
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67180.1 | Symbols: TOE3 | target of early activation tagged... 1646 0.0
> AT5G67180.1 | Symbols: TOE3 | target of early activation tagged
(EAT) 3 | chr5:26801949-26804249 REVERSE LENGTH=1544
Length=1544
Score = 1646 bits (891), Expect = 0.0
Identities = 1012/1067 (95%), Gaps = 22/1067 (2%)
Strand=Plus/Plus
Query 1 ATGTGGAACCTTAACGACTCACCCGATCATCACGAAGAATCCGACAGTAGAGGGAATCCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 ATGTGGAACCTTAACGACTCACCCGATCATCACGAAGAATCCGACAGTAGAGGGAATCCG 375
Query 61 TTCGGACACGTGTCAAACGGGACGAGTCAATCTGTC-ACGTGGCTACCGTCTGTGCTTCC 119
||||||||||||||||||||| ||||||||||| | ||||||||||||| |||||||||
Sbjct 376 GTCGGACACGTGTCAAACGGGATGAGTCAATCTG-CAACGTGGCTACCGTTTGTGCTTCC 434
Query 120 GGTGACCCGGAATTTCTTTCCGGCTCGAAGCATGGAACCGGGAGTTCGATGGTCCGGTTT 179
||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 435 GGTGACCAGGAATTTCTTTCCGGCTCAAAGCATGGAACCGGGAGTTCGTTGGTCCGGTTT 494
Query 180 CAATAGTGTCGGTAAGTCGGATCCGAGCGGGTCGGGTCGACCAGAAGAGGCGGAGCCGGA 239
|||||||||||||||||||||||| ||||| ||||||||||||| | | ||||||||
Sbjct 495 CAATAGTGTCGGTAAGTCGGATCCAAGCGGATCGGGTCGACCAG-A-A----GAGCCGGA 548
Query 240 GATATCACCGCCGATAAAGAAGAGCCGACGTGGTCCTCGCTCACGTAGCTCTCAGTATCG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 GATATCACCGCCGATAAAGAAGAGCCGACGTGGTCCTCGCTCACGTAGCTCTCAGTATCG 608
Query 300 AGGAGTTACGTTTTACCGACGAACAGGAAGATGGGAGTCACATATTTGGGACTGTGGGAA 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 609 AGGAGTTACGTTTTACCGACGAACCGGAAGATGGGAGTCACATATTTGGGACTGTGGGAA 668
Query 360 GCAAGTGTACTTAGGTGGATTTGACACAGCACATGCTGCTGCTCGAGCCTATGATCGAGC 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 669 GCAAGTGTACTTAGGTGGATTTGACACTGCACATGCTGCTGCTCGAGCCTATGATCGAGC 728
Query 420 GGTGATTAAATTCAGAGGTGTAGATGCAGATATTAATTTCGACATTGAAGACTACGTGGA 479
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 729 GGCGATTAAATTCAGAGGTGTAGATGCAGATATTAATTTCGACATTGAAGACTACCTTGA 788
Query 480 CGATTTGAAACAGATGGGCAATTTGACCAAGGAAGAGTTTATGCATGTTCTTAGAAGGCA 539
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 789 CGATTTGAAACAGATGGGAAATTTGACAAAGGAAGAGTTTATGCATGTACTTAGAAGGCA 848
Query 540 AAGCACTGGGTTTCCAAGAGGCAGTTCTAAATACAGAGGTGTTACTTTGCACAAATGTGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 AAGCACTGGGTTTCCAAGAGGCAGTTCTAAATACAGAGGTGTTACTTTGCACAAATGTGG 908
Query 600 AAGATGGGAGTCTCGTTTGGGTCAATTTCTCAACAAAAAGTACGTTTATTTGGGTCTCTT 659
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 909 AAGATGGGAGTCACGTTTGGGTCAATTCCTCAACAAAAAGTACGTTTATTTGGGTCTCTT 968
Query 660 TGATACCGAGATTGAAGCTGCTAGAGCTTATGATAAAGCGGCAATAAAGTGTAATGGGAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 TGATACCGAGATTGAAGCTGCTAGAGCTTATGATAAAGCGGCAATAAAGTGTAATGGGAA 1028
Query 720 AGACGCTGTTACCAATTTCGACCCTAAAGTATATGAGGAAGA-G-----CTTAGCCCAGA 773
|||||||||||||||||| |||||||||||||| |||||||| | |||||| ||||
Sbjct 1029 AGACGCTGTTACCAATTTTGACCCTAAAGTATACGAGGAAGAAGAAGATCTTAGCTCAGA 1088
Query 774 GACGACGAGGAATGGTCATAATCTTGATCTAAGTTTAGGAGAATCAA-ACTCGGAAGAGT 832
|||||||||||| ||||||||||||| ||||||| ||||||||||| | || |||||||
Sbjct 1089 GACGACGAGGAACGGTCATAATCTTGGTCTAAGTCTAGGAGAATCATCA-TCTGAAGAGT 1147
Query 833 TTGGACTCAAGTCTGATATTGCGAGCATAAGAAGTAGGATTAGAGATGAGGAGAGATTAT 892
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1148 TTAGACTCAAGTCTGATATTGCAAGCATAAGAAGTAGGATTAGAGATGAGGAGAGATTAT 1207
Query 893 TAGGGAGAGATCTATCGCTAGCAATGATGACGACGACTGTCAGATCGGAAAAGCA--AA- 949
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1208 TAGGGAGCGATCTATCGCTAGCAATGATGACGACGACTGTCAGATCGGAAAAGCAGCAAT 1267
Query 950 CAGACGGTGGAGGAAATCGAGTGG-G--AATGGTAGCATCATCAGGATTCTCTCCTCAAC 1006
| |||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 1268 CGGACGGTGGAGGAAATCGAGTGGTGGGAATGGCAGCATCATCAGGATTCTCTCCTCAAC 1327
Query 1007 CTTCCCCTTACCGCATTCCTCACACCTTTCACTTCTCTCGTCCCTGA 1053
||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1328 CTTCCCCTTACCGCATTCCTCGCACCTTCCACTTCTCTCGTCCCTGA 1374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51640703116
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5