BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358961
Length=677
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13510.1 | Symbols: AMT1;1, ATAMT1, ATAMT1;1 | ammonium tran... 952 0.0
AT4G13505.1 | Symbols: | other RNA | chr4:7858000-7859691 REVE... 797 0.0
AT3G24300.1 | Symbols: AMT1;3, ATAMT1;3 | ammonium transporter ... 486 9e-137
> AT4G13510.1 | Symbols: AMT1;1, ATAMT1, ATAMT1;1 | ammonium transporter
1;1 | chr4:7858183-7859918 FORWARD LENGTH=1736
Length=1736
Score = 952 bits (515), Expect = 0.0
Identities = 624/678 (92%), Gaps = 2/678 (0%)
Strand=Plus/Plus
Query 1 ATGTCTTGCAAC-GCGACCGATCTCTCGGTCTTGTTAGGTCCTAATGCCACGGAGGCTGC 59
||||||||| | || ||||||||| | ||| |||| |||||||||||||||| ||| ||
Sbjct 38 ATGTCTTGC-TCGGCCACCGATCTCGCTGTCCTGTTGGGTCCTAATGCCACGGCGGCGGC 96
Query 60 CAACTACATCTGTGGCCAGCTAAGCGTCGTCAACAACAAATTCATCGACACCGCTTTCGC 119
||||||||||||||||||| || ||| ||||||||||||||| |||||||||||||||||
Sbjct 97 CAACTACATCTGTGGCCAGTTAGGCGACGTCAACAACAAATTTATCGACACCGCTTTCGC 156
Query 120 CATCGACAACACATACCTCCTCTTCTCCGCTTACCTTGTCTTCTCTATGCAGCTTGGCTT 179
|| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 157 TATAGACAACACTTACCTTCTCTTCTCCGCCTACCTTGTCTTCTCTATGCAGCTTGGCTT 216
Query 180 CGCTATGCTCTGTGCCGGTTCCGTAAGAGCCAAGAATACGATGAACATCATGCTTACCAA 239
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 217 CGCTATGCTCTGTGCCGGTTCCGTGAGAGCCAAGAATACTATGAACATCATGCTTACCAA 276
Query 240 CGTTCTTGATGCTGCGGCCGGAGGTCTCTTTTACTATCTATTTGGCTATGCTTTTGCCTT 299
||| ||||| ||||| ||||| |||||||| || ||||| |||||||| || ||||||||
Sbjct 277 CGTCCTTGACGCTGCAGCCGGTGGTCTCTTCTATTATCTGTTTGGCTACGCCTTTGCCTT 336
Query 300 TGGATCTCCGTCCAATGGTTTCATTGGTAAACACTACTTTGGTCTCAAAGATATCCCCAC 359
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 337 TGGATCTCCGTCCAATGGTTTCATCGGTAAACACTACTTTGGTCTCAAAGACATCCCCAC 396
Query 360 GGCCACTGCTGATTATTCCAATTTTCTCTACCAATGGGCCTTTGCTATAGCCGCGGCTGG 419
|||| ||||||| || ||||| ||||||||||||||||||||||| || || ||||||||
Sbjct 397 GGCCTCTGCTGACTACTCCAACTTTCTCTACCAATGGGCCTTTGCAATCGCTGCGGCTGG 456
Query 420 AATCACTAGTGGTTCGATCGCTGAACGGACTCAGTTCGTGGCTTACCTAATCTATTCCTC 479
|||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 457 AATCACAAGTGGCTCGATCGCTGAACGGACACAGTTCGTGGCTTACCTAATCTATTCCTC 516
Query 480 TTTCTTAACCGGGTTTGTTTACCCGGTCGTGTCTCACTGGTTCTGGTCGGTTGATGGATG 539
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 517 TTTCTTAACCGGGTTTGTTTACCCGGTCGTCTCTCACTGGTTCTGGTCAGTTGATGGATG 576
Query 540 GGCCAGTCCGTTCCGGACCGATGGAGATTTGCTTTTCAGAACCGGAGCGATCGATTTCGC 599
|||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 577 GGCCAGCCCGTTCCGTACCGATGGAGATTTGCTTTTCAGCACCGGAGCGATAGATTTCGC 636
Query 600 TGGCTCCGGTGTTGTTCATATGGTCGGAGGTATCGCTGGACTCTGGGGAGCGTTCATTGA 659
||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 637 TGGGTCCGGTGTTGTTCATATGGTCGGAGGTATCGCTGGACTCTGGGGTGCGCTCATCGA 696
Query 660 AGGACCACGACTCGGCCG 677
||| |||||||| |||||
Sbjct 697 AGGTCCACGACTTGGCCG 714
> AT4G13505.1 | Symbols: | other RNA | chr4:7858000-7859691 REVERSE
LENGTH=1625
Length=1625
Score = 797 bits (431), Expect = 0.0
Identities = 513/553 (93%), Gaps = 3/553 (1%)
Strand=Plus/Minus
Query 126 CAAC-ACATACCTCCTCTTCTCCGCTTACCTTGTCTTCTCTATGCAGCTTGGCTTCGCTA 184
|||| |||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1346 CAACTACAT--CTTCTCTTCTCCGCCTACCTTGTCTTCTCTATGCAGCTTGGCTTCGCTA 1289
Query 185 TGCTCTGTGCCGGTTCCGTAAGAGCCAAGAATACGATGAACATCATGCTTACCAACGTTC 244
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 1288 TGCTCTGTGCCGGTTCCGTGAGAGCCAAGAATACTATGAACATCATGCTTACCAACGTCC 1229
Query 245 TTGATGCTGCGGCCGGAGGTCTCTTTTACTATCTATTTGGCTATGCTTTTGCCTTTGGAT 304
|||| ||||| ||||| |||||||| || ||||| |||||||| || |||||||||||||
Sbjct 1228 TTGACGCTGCAGCCGGTGGTCTCTTCTATTATCTGTTTGGCTACGCCTTTGCCTTTGGAT 1169
Query 305 CTCCGTCCAATGGTTTCATTGGTAAACACTACTTTGGTCTCAAAGATATCCCCACGGCCA 364
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1168 CTCCGTCCAATGGTTTCATCGGTAAACACTACTTTGGTCTCAAAGACATCCCCACGGCCT 1109
Query 365 CTGCTGATTATTCCAATTTTCTCTACCAATGGGCCTTTGCTATAGCCGCGGCTGGAATCA 424
||||||| || ||||| ||||||||||||||||||||||| || || |||||||||||||
Sbjct 1108 CTGCTGACTACTCCAACTTTCTCTACCAATGGGCCTTTGCAATCGCTGCGGCTGGAATCA 1049
Query 425 CTAGTGGTTCGATCGCTGAACGGACTCAGTTCGTGGCTTACCTAATCTATTCCTCTTTCT 484
| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1048 CAAGTGGCTCGATCGCTGAACGGACACAGTTCGTGGCTTACCTAATCTATTCCTCTTTCT 989
Query 485 TAACCGGGTTTGTTTACCCGGTCGTGTCTCACTGGTTCTGGTCGGTTGATGGATGGGCCA 544
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 988 TAACCGGGTTTGTTTACCCGGTCGTCTCTCACTGGTTCTGGTCAGTTGATGGATGGGCCA 929
Query 545 GTCCGTTCCGGACCGATGGAGATTTGCTTTTCAGAACCGGAGCGATCGATTTCGCTGGCT 604
| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 928 GCCCGTTCCGTACCGATGGAGATTTGCTTTTCAGCACCGGAGCGATAGATTTCGCTGGGT 869
Query 605 CCGGTGTTGTTCATATGGTCGGAGGTATCGCTGGACTCTGGGGAGCGTTCATTGAAGGAC 664
||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| |
Sbjct 868 CCGGTGTTGTTCATATGGTCGGAGGTATCGCTGGACTCTGGGGTGCGCTCATCGAAGGTC 809
Query 665 CACGACTCGGCCG 677
||||||| |||||
Sbjct 808 CACGACTTGGCCG 796
> AT3G24300.1 | Symbols: AMT1;3, ATAMT1;3 | ammonium transporter
1;3 | chr3:8805631-8807388 REVERSE LENGTH=1758
Length=1758
Score = 486 bits (263), Expect = 9e-137
Identities = 510/628 (81%), Gaps = 22/628 (4%)
Strand=Plus/Plus
Query 46 GCCACGGAGGCTGCCAACTACATCTGTGGCCAGCTAAGCGTCGTCAACAACAAATTCATC 105
||||||| ||| ||| ||||||| || ||||| || || ||| |||||||| |||| |
Sbjct 92 GCCACGGCGGCGGCCGACTACATTTGCGGCCAATTAGGCACCGTTAACAACAAGTTCACC 151
Query 106 GACACCGCTTTCGCCATCGACAACACATACCTCCTCTTCTCCGCTTACCTTGTCTTCTCT 165
|| | || |||||||| |||||||| |||||||||||||| || |||||||||||| |
Sbjct 152 GATGCAGCCTTCGCCATAGACAACACCTACCTCCTCTTCTCTGCCTACCTTGTCTTCGCC 211
Query 166 ATGCAGCTTGGCTTCGCTATGCTCTGTGCCGGTTCCGTAAGAGCCAAGAATACGATGAAC 225
|||||||| |||||||||||||| ||||| ||||| || |||||||||||||||||||||
Sbjct 212 ATGCAGCTCGGCTTCGCTATGCTTTGTGCTGGTTCTGTTAGAGCCAAGAATACGATGAAC 271
Query 226 ATCATGCTTACCAACGTTCTTGATGCTGCGGCCGGAGGTCTCTTTTACTATCTATTTGGC 285
|||||||||||||| || ||||| ||||| |||||||| ||||| |||||||| |||||
Sbjct 272 ATCATGCTTACCAATGTCCTTGACGCTGCAGCCGGAGGACTCTTCTACTATCTCTTTGGT 331
Query 286 TATGCTTTTGCCTTTGGATC-TCCGTCC-AATGGTTTCATTGGTAA-ACACTACTTTGGT 342
|| || |||||||||||| ||| ||| || |||| |||||| || |||| |||||| |
Sbjct 332 TACGCCTTTGCCTTTGGAGGATCC-TCCGAAGGGTT-CATTGG-AAGACACAACTTTGCT 388
Query 343 CTCAAAGA-TATCCCCACGGCCACTGCTGATTATTCCAATT-TTC-TCTACCAATGGGCC 399
|| | ||| | ||| || |||| |||||||| || || ||| |||||||||||||
Sbjct 389 CTTAGAGACTTTCCG-ACTCCCACAGCTGATTACTCT--TTCTTCCTCTACCAATGGGCG 445
Query 400 TTTGCTATAGCCGCGGCTGGAATCACTAGTGGTTCGATCGCTGA-ACGGACTCAGTTCGT 458
|| || || || || ||||||||||| |||||||||||||| || | |||||||||||||
Sbjct 446 TTCGCAATCGCGGCCGCTGGAATCACAAGTGGTTCGATCGCAGAGA-GGACTCAGTTCGT 504
Query 459 GGCTTACCTAATCTATTCCTCTTTCTTAACCGGGTTTGTTTACCCGGTCGTGTCTCACTG 518
||||||| | || || || |||||||||||||| |||||||||||||| || ||||||||
Sbjct 505 GGCTTACTTGATATACTCTTCTTTCTTAACCGGATTTGTTTACCCGGTTGTCTCTCACTG 564
Query 519 GTTCTGGTCGGTTGATGGATGGGCCAGTCCGTTCCGGACCGATGGA-GATTTGCTT-TTC 576
||| ||||| ||||||||||||||||| || || | | ||| ||| | || ||
Sbjct 565 GTTTTGGTCCCCGGATGGATGGGCCAGTCCCTTTCGTTCAGC-GGATGATC-GTTTGTTT 622
Query 577 AGAACCGGAGCGATCGA-TTTCGCTGGCTCCGGTGTTGTTCATATGGTCGGAGGTATCGC 635
|| |||||||| || || ||| |||||||||||||||||||| ||||| || || || ||
Sbjct 623 AGCACCGGAGCCATTGACTTT-GCTGGCTCCGGTGTTGTTCACATGGTTGGTGGCATAGC 681
Query 636 TGGACTCTGGGGAGCG-TTCATTGAAGG 662
|| | ||||| || || ||||||||
Sbjct 682 AGGTTTATGGGGTGCTCTT-ATTGAAGG 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32752663844
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5