BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg359123 Length=1674 Score E Sequences producing significant alignments: (Bits) Value AT4G12700.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2628 0.0 AT2G04280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1291 0.0 > AT4G12700.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04280.1); Has 136 Blast hits to 136 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr4:7482466-7484405 REVERSE LENGTH=1940 Length=1940 Score = 2628 bits (1423), Expect = 0.0 Identities = 1588/1668 (95%), Gaps = 9/1668 (1%) Strand=Plus/Plus Query 13 TCCAGAACCGGAGGTTTCCGACCAGAGAATCTAGGGCAAAACGCAGTAAGCTTAATCGGA 72 ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 99 TCCAGAACCGGAGGTTTCCGACCTGAGAATCTAGGGCAAAACGCAGTATCCTTAATCGGA 158 Query 73 AGCATAGGCTTCTCTATATTCGTAATCGGAGTCGTAGTTTTCACCATTACCGCTGCTACA 132 ||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||| Sbjct 159 AGCATAGGCTTCTCTGTACTCGTAATCGGAGTCGTAGTTTTCACCATTATCGCTGCTACA 218 Query 133 TATGAACCAGAAGATCCACTTTTTCACCCATCTGACAAAATCACAACTTTCCTCTCATCC 192 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 219 TATGAACCAGAAGATCCACTATTTCACCCATCTGACAAAATCACAACTTTCCTCACATCC 278 Query 193 AATTCAAACGCTACTCTTAAATCCGACGACAGTGTTGTTAAAACCGGTGAAGATTTCATG 252 ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 279 AATTCAAACGCTACTCTTAAATCCGACGACAGTATTGTCAAAACCGGTGAAGATTTCATG 338 Query 253 GCGGCGAACCAAACCGCG-TTCGCTGGATTCATCAACATAGCTGATGTGGAAACATCTGA 311 |||||||||||||||||| || || ||||||||||| ||||||||||| ||||||||||| Sbjct 339 GCGGCGAACCAAACCGCGTTTGGC-GGATTCATCAATATAGCTGATGTTGAAACATCTGA 397 Query 312 GAATGATTCTGATGCTAATCAATTGGATTGTGATTCCAATGTCCCAATCGATTGCAAAGA 371 |||||| ||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||| Sbjct 398 GAATGACTCTGATGGTAATCAATTGGATTGTGATACCAATATCCCAATTGATTGCAAAGA 457 Query 372 TCCTGAAGTTTTTCACTTGATGATGAAAGCTACTATGGAGAAGTTTAAAGACATTCACTT 431 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 458 TCCTGAAGTTTTTCACTTGATGATGAAAGCTACTATGGAGAAGTTTAAAGACAGTCACTT 517 Query 432 TTATAAGTTTGGTAAACCTGTGACTGTGGAA-G--GTACTAGTTCTTGTGATATGGCTTG 488 ||||||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||| Sbjct 518 TTATAAGTTTGGTAAACCTGTGATTGTGGAAGGTAGTAGTAGTTCTTGTGATATGGCTTG 577 Query 489 GCGTTATAGACCTAAGGATGGTAAAACGGCTACGTTTTATAAGGATTATAGGAGGTTTGT 548 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 578 GCGTTATAGACCTAAGGATGGTAAAGCGGCTGCGTTTTATAAGGATTATAGGAGGTTTGT 637 Query 549 GATTGCAAAGTCTGAGAATTGTAGTGTTAGTGTGATGGGTATTGGTGAGTATCATTCGGG 608 ||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 638 GATTGAAAAGTCTGGGAATTGTAGTGTTAGTGTGATGGGGATTGGTGAGTATCATTCGGG 697 Query 609 TGTGAATGCGAGGAAGCGGAAGAGGCCCGGGTTTCGGAATTCGAGTGGTGGTAAGGTTGA 668 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 698 TGTGAATGCGAGGAAGCGGAAGAGGCCCGGGTTTCGAAATTCGAGTGGTGGTAAGGTTGA 757 Query 669 TGATTTCTCATTGCCTGTGGTTGGTGAAGCAGTGAATGATTCACTTCCTGTGGTTGAGTC 728 ||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 758 TGATTTCGCATTGCCTGTAGTTGGTGAAGCAGTGAATGATTCACTTCCTGTTGTTGAGTC 817 Query 729 TGAGAATGCGTTTAAAGAAGGTCATTACTTGGTTTATTCGGGTGGAGGAGATAGGTGTAA 788 ||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 818 TGAAAATGTGTTTAAAGAAGGTCATTACTTGGTTTATTCTGGTGGAGGAGATAGGTGTAA 877 Query 789 GAGTATGAACCATTTCTTGTGGAGTTTCTTGTGTGCTTTGGGGGAAGCTCAGTATTTGAA 848 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 878 GAGTATGAACCATTTCTTGTGGAGTTTCTTGTGTGCTTTAGGGGAAGCTCAGTATTTGAA 937 Query 849 TAGGACTTTAGTGATGGATTTGAGTCTTTGTTTGTCTTCTGTTTATACGTTGTCTGGTCA 908 ||| || |||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 938 TAGAACATTAGTGATGGATTTGACTCTTTGTTTGTCTTCTGTTTATACATTGTCTGGTCA 997 Query 909 AAACGAGGAAGGAAAGGACTTTAGGTTTTACTTTGATTTCGAGCATTTGAAAGAGGCTGC 968 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 998 AAACGAGGAAGGGAAGGACTTTAGGTTTTACTTTGATTTCGAGCATTTGAAAGAGGCTGC 1057 Query 969 TTCTGTGATAGACCAGGTGCAGTTTTGGGCAGATTGGGGAAAATGGTATAAGAAGAATGG 1028 |||| || |||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1058 TTCTATGTTAGACCAGGTGCAGTTTTGGGCTGATTGGGGGAAATGGTATAAGAAGAATGG 1117 Query 1029 ATTAAAGCTTCATCTTGTGGAAGACTTTAGGGTCACACCGATGAAGCTTGTTGATGTTAA 1088 |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || Sbjct 1118 ATTAAAGCTTCATCTTGTGGAAGATTTTCGGGTCACACCGATGAAGCTTGTTGATGTGAA 1177 Query 1089 GGACACGTTGATAATGAGGAAGTTCGGGACAGTAGAACCAGATAACTATTGGTACAGAGT 1148 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1178 GGACACGTTGATAATGAGGAAGTTCGGGACAGTAGAACCAGATAACTATTGGTATAGAGT 1237 Query 1149 TTGTGAAGGGGAGACAGAATCTGTTGTGCAAAAGCCTTGGCATCTGTTGTGGAAATCTAG 1208 || |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| Sbjct 1238 ATGCGAAGGGGAGACAGAATCTGTTGTGCAAAGGCCTTGGAATCTATTGTGGAAATCTAA 1297 Query 1209 ACGGCTGATGGAGATTGTTTCTGCGATTGCTTCGAGGTTAAACTGGGATTATGATGCTAT 1268 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1298 ACGACTGATGGAGATTGTTTCTGCGATTGCTTCGAGGTTAAACTGGGATTATGATGCTAT 1357 Query 1269 TCACATTGAGAGAGGAGATAAGGCGAGAAACAAGGAAGTTTGGCCTAATCTGGAAAAGGA 1328 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 1358 TCACATTGAGAGAGGAGACAAGGCGAGAAACAAGGAAGTTTGGCCTAATCTTGAAAAGGA 1417 Query 1329 TACTTCACCAAGCTCCATTTTATCTACCCTGAAGGACAAAATCGAGCAAGGGAGGAATCT 1388 |||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| Sbjct 1418 TACTTCACCAAGCTCCATTTTATCTACCCTCCAGGACAAAATCGAACAAGGAAGGAATCT 1477 Query 1389 TTATATTGCAACAAATGAACCAGATGTAA-CTTTCCTTAACCC-TATGAAAGACAAGTAC 1446 |||||||||||||||||||||||| || | ||||| ||||||| | |||||||||||||| Sbjct 1478 TTATATTGCAACAAATGAACCAGA-GTTATCTTTCTTTAACCCCT-TGAAAGACAAGTAC 1535 Query 1447 AAAACCCATCTTCTGGATGAGTTTAAGGATCTCTGGGACGAGAGCAGCGAATGGTATTCA 1506 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1536 AAACCCCATTTTCTGGATGAGTTTAAGGATCTCTGGGACGAGAGCAGCGAATGGTATTCA 1595 Query 1507 GAGACCATGAAGCTTAATGGAGGAAACCCAGTCGATTTTGACGGTTACATGAGAGCGTCT 1566 ||||| | |||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1596 GAGACAACGAAGCTTAATGGAGGAAACCCAGTTGAGTTTGACGGTTACATGAGAGCGTCT 1655 Query 1567 GTTGATACGGAAGTGTTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAATGATCTTACC 1626 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1656 GTTGATACAGAGGTGTTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAATGATCTTACC 1715 Query 1627 AATGACTGTAGAGACGGAATCGGCACTTGCAACGTAGCAGCAAGCTGA 1674 |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1716 AATGACTGTAGAGATGGAATCGGCACTTGCAACGTAGCAGCAAGCTGA 1763 > AT2G04280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12700.1); Has 130 Blast hits to 130 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr2:1480068-1482089 REVERSE LENGTH=2022 Length=2022 Score = 1291 bits (699), Expect = 0.0 Identities = 1388/1705 (81%), Gaps = 109/1705 (6%) Strand=Plus/Plus Query 22 GGAGGTTTCCGACCAGAGAATCTAGGGCAAAACGCAGTAAGCTTAATCGG-AAGCATAGG 80 ||||| ||||| ||||||||||||| ||||||||| | | ||||||||| || |||||| Sbjct 134 GGAGGATTCCGTGCAGAGAATCTAGGTCAAAACGCACTTACCTTAATCGGTAA-CATAGG 192 Query 81 CTTCTCTA-TATTCGTAATCGGAGT-CGTAGTTTTCACCATTACCGCTGCTACATATGAA 138 |||||| | | ||||| ||||||| | || | |||||||| | ||| || || || ||| Sbjct 193 CTTCTC-ACTCTTCGTCTTCGGAGTAC-TAATCTTCACCATAATCGCCGCAACTTACGAA 250 Query 139 CCAGAAGATCCACTTTTTCACCCATCTGACAAAATCACAACTTTCCTCTCATCCA-ATTC 197 ||||||||||| || || |||||||||||||||||||||||||||||| | |||| | || Sbjct 251 CCAGAAGATCCTCTCTTCCACCCATCTGACAAAATCACAACTTTCCTCACTTCCACA-TC 309 Query 198 AAACGCTACTCTTAAATCCGACGACAGTGTTGTTAAAACCGGTGAAGATTTCATGGC-GG 256 ||||||||| |||| |||||| ||| |||||||||||||||||||||||||| || | Sbjct 310 AAACGCTACACTTAGATCCGATGACTCCGTTGTTAAAACCGGTGAAGATTTCAT-GCTCG 368 Query 257 CGAACCAAACCGCGTTCGCTGGA-TTCATCAACAT-AGCTGATGTGGAA---A-CATC-- 308 | ||||||||||| || || || || |||||||| | | ||||| ||| | || | Sbjct 369 CTAACCAAACCGCATTTGC-AGAGTTTATCAACATAAAC-GATGTTGAAGCCAGCACCAA 426 Query 309 TGAGA--A-T---GATTCTGATGCTAATCAA-TTGGATTGTGAT-TCCAATGTC-CCAAT 359 ||||| | | || || | ||| ||| ||||| |||||| | ||| | ||||| Sbjct 427 TGAGACTACTACAGAGGAAGAGGGTAA-CAAGTTGGAATGTGATGT-GAAT-ACTCCAAT 483 Query 360 CGATTGCAAAGATCCTG-AAGTTTTTCA-CTTGATGATGAAAGCTACTATGGAGAAGTTT 417 |||||||||||| | | |||| ||||| ||| ||||||| ||||||||| || |||||| Sbjct 484 TGATTGCAAAGAT-CAGCAAGTGTTTCATCTT-ATGATGAGAGCTACTATTGACAAGTTT 541 Query 418 AAAGACATTCACTTTTATAAGTTTGGTAAACCTGTGACT-GTG--GAAGGTACT-AGTTC 473 ||||| ||||||||||||||||||||||| ||||| ||| | | |||||| | | ||| Sbjct 542 AAAGATATTCACTTTTATAAGTTTGGTAAGCCTGTTACTGGCGAAGAAGGT-GTGAATTC 600 Query 474 TTGTGATATGGCTTGGCGTTATAGACCTAAG-GATGGTAAAACG-GCTACGTTTTATAAG 531 |||||||||||| ||||||||||| ||| || ||||| || | | ||| | ||||||||| Sbjct 601 TTGTGATATGGCGTGGCGTTATAGGCCT-AGAGATGGGAAGA-GTGCTGCTTTTTATAAG 658 Query 532 GATTATAGGAGGTTTG-TGATTGCAAAGTCTGAGAATTGTAGTGTTAGTG-TGATGGGTA 589 |||||||||||||||| || |||| |||||||||||||||||||| |||| || |||| | Sbjct 659 GATTATAGGAGGTTTGTTG-TTGCTAAGTCTGAGAATTGTAGTGTGAGTGTTGTTGGG-A 716 Query 590 TTGGTGAGTATCATTCGGGTGTGAATGCGAGGAAGCGGAAG-AG-----G---CCCGGGT 640 |||||||||||||||||||| |||||||||||||| ||||| || | | |||| Sbjct 717 TTGGTGAGTATCATTCGGGTTTGAATGCGAGGAAGAGGAAGAAGAATCAGAAAGCTGGGT 776 Query 641 TTCG-GAATTCGAGTGGTGGTAAGGTTGATGATTTCTCATTGCCTGTGGTTGGTGAAGC- 698 || | ||| | |||||| ||| ||||||||||| |||||||| ||||||||| | Sbjct 777 TT-GAGAA---AACTGGTGGGAAGAAAGATGATTTCTCTTTGCCTGTTGTTGGTGAA-CT 831 Query 699 AGTGAATGATTCACTTCCTGTGGTTGAGTCTGAGAATGCGTTTAAAGA-AGGTC-ATTAC 756 ||||||||||| |||||| ||||||||||||| | || |||| |||| || | | || Sbjct 832 TGTGAATGATTCTCTTCCTATGGTTGAGTCTGATAGTGTGTTT-AAGACTGG-CAAGTAT 889 Query 757 TTGGTTTAT-TCGGGTGGAGGAGATAGGTGTAAGAGTATGAACCA-TTTCTTGTGGAGTT 814 ||||||||| | ||||| ||||||||||||||||||||||| || |||| ||||||||| Sbjct 890 TTGGTTTATGT-TGGTGGTGGAGATAGGTGTAAGAGTATGAATCATTTTC-TGTGGAGTT 947 Query 815 TCTTGTGTGCT-TTGGGGGAAGCTCAGTATTTGAATAGGACTTTAGTGATGGATTTGAGT 873 ||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 948 TCTTGTGTGCTCTT-GGGGAAGCTCAGTATTTGAATAGGACTCTAGTGATGGATTTGA-C 1005 Query 874 CTT-TGTTTGTCTTCTGTTTATACGTT-GTCTGGTCAAAACGAGGAAGGAAAGGACTTT- 930 ||| |||||||||||| | ||||| || ||||||||| || |||||||| ||||| ||| Sbjct 1006 CTTGTGTTTGTCTTCTATCTATAC-TTCGTCTGGTCAGAATGAGGAAGGCAAGGA-TTTC 1063 Query 931 AGGTTTTACTTTGATTTCGAGCATTTGAAAGAGGCTGCTTCTGTGATAGA-CCAGGTGCA 989 |||||||||||||||||||||||||||||||| |||||||||||| | || || | || Sbjct 1064 AGGTTTTACTTTGATTTCGAGCATTTGAAAGAAGCTGCTTCTGTGTTGGATGAAGCT-CA 1122 Query 990 GTTTTGGG--CAGATTGGGGAAAATG-GT-A-TA-AGAAG-AATGGATTAAAGCTTCATC 1042 |||||||| ||| | ||||||| || || | | ||||| ||| |||| || ||||||| Sbjct 1123 GTTTTGGGCTCAG-TGGGGGAAATTGCGTAAGAAGAGAAGAAATAGATTGAACCTTCATC 1181 Query 1043 TTGTGGAAGACTTTAGGGTCACACCGATGAAGCTTGTTGATGTTAAGGACACGTTGATAA 1102 | ||||| || ||||||||||| || |||||||| | | ||| || || |||||||||| Sbjct 1182 TCGTGGAGGATTTTAGGGTCACTCCCATGAAGCTCGCGGCTGTCAAAGATACGTTGATAA 1241 Query 1103 TGAGGAAGTTCGGGA-CAGTAGAACCAGATAACTATTGGTACAGAGTTTGTGAAGGGGA- 1160 |||||||||| ||| | ||||||||||| || ||||||||||| ||||||||||| || Sbjct 1242 TGAGGAAGTT-TGGATCTGTAGAACCAGACAATTATTGGTACAGGGTTTGTGAAGGAGAT 1300 Query 1161 GACAGAATCTGTTGTGCAAAAG-CCTTGGCATCTGTTGTGGAAATCTAGACGGCTGATGG 1219 | ||||||||||||| ||| | || ||||||||||| |||||||| ||| || |||||| Sbjct 1301 G-CAGAATCTGTTGT-TAAACGACCGTGGCATCTGTTATGGAAATCAAGAAGGTTGATGG 1358 Query 1220 AGATTGTTTCTGCGATTGCTTCGAGGTTAAACTGGGATTATGATGCTATTCACATTGAGA 1279 | || || ||||| ||||| || |||||||||||||| || |||||| | |||||||||| Sbjct 1359 AAATCGTCTCTGCTATTGCATCAAGGTTAAACTGGGACTACGATGCTGTACACATTGAGA 1418 Query 1280 GAGGAGATAAGGCGAGAAACAAGGAAGTTTGGCCTAATCTGGAAAAGGATACTTCACCAA 1339 ||||||| || || ||||||||||| |||||||||||||| ||| ||||||||| || | Sbjct 1419 GAGGAGAGAAAGCAAGAAACAAGGAGGTTTGGCCTAATCTTGAAGCGGATACTTCCCCGA 1478 Query 1340 GCTC-CATTTTATCTACCCTGAAGGACAAAATCG-AGCAAGGGAGGAATCTTTATATTGC 1397 || | | | || || ||| || |||||||| | | || |||| ||| |||| || || || Sbjct 1479 GCGCTC-TCTTGTCGACCTTGCAGGACAAAGTTGAAG-AAGGAAGGCATCTCTACATCGC 1536 Query 1398 AACAAATGAACCAG-ATGTAACTTTCCTT-AACCCTATGAAAGACAAGTACAAAACCCAT 1455 |||||||||| || || || | || ||| |||||| ||||||| |||||| || ||| Sbjct 1537 AACAAATGAAGGAGAAT-TATCCTT-CTTCAACCCTTTGAAAGATAAGTACGCCACTCAT 1594 Query 1456 CTT-CTGGATGAGTTTAAGGATCTCTGGGACGAGAGCAGCGAATGGTATTCAGAGACCA- 1513 || || | || | || ||||| ||||| |||||||| || |||||||||||||| | Sbjct 1595 -TTCCTTTACGACTACAAAGATCTTTGGGATGAGAGCAGTGAGTGGTATTCAGAGACTAC 1653 Query 1514 TGAAGCTTAATGGAGGAAACCCAGTCGATTTTGACGGTTACATGAGAGCGTCTGTTGATA 1573 | |||||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||| | Sbjct 1654 T-AAGCTTAATGGAGGCAACCCGGTCGAATTTGATGGTTACATGAGAGCATCTGTTGACA 1712 Query 1574 CGGAAGTGTTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAATGATCTTACCAATGACT 1633 | ||||| ||||||||||||||||||||||||||||||||||| |||||||| || || | Sbjct 1713 CAGAAGTATTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAACGATCTTACAAACGATT 1772 Query 1634 GTAGAGACGGAATCGGCACTTGCAA 1658 ||| ||| ||| | || || ||||| Sbjct 1773 GTAAAGATGGAGTTGGGACCTGCAA 1797 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82730498160 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5