BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359227
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42800.1 | Symbols: DFR, TT3, M318 | dihydroflavonol 4-reduc... 1690 0.0
> AT5G42800.1 | Symbols: DFR, TT3, M318 | dihydroflavonol 4-reductase
| chr5:17164141-17165918 REVERSE LENGTH=1358
Length=1358
Score = 1690 bits (915), Expect = 0.0
Identities = 1078/1157 (93%), Gaps = 10/1157 (1%)
Strand=Plus/Plus
Query 1 ATGGTTAGTCAGACAGAGACCGTGTGTGTAACGGGCGCTTCGGGATTCATCGGTTCATGG 60
||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 55 ATGGTTAGTCAGAAAGAGACCGTGTGTGTAACCGGCGCTTCGGGTTTCATCGGTTCATGG 114
Query 61 CTAGTGATGCGATTACTCGAACGTGGTTACTTTGTTCGTGCCACTGTGCGCGATCCTGGG 120
||||||||||||||||| |||||||||||||||||||||||||| || || ||||| ||
Sbjct 115 CTAGTGATGCGATTACTAGAACGTGGTTACTTTGTTCGTGCCACCGTTCGAGATCCCGGT 174
Query 121 AATTTGAAGAAAGTGCAACATCTTCTTGATTTGCCAAATGCCAAGACGCAACTCACTTTA 180
|||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 175 AATTTGAAGAAAGTACAACATCTTCTTGATTTGCCAAACGCCAAGACGCTACTCACTTTA 234
Query 181 TGGAAGGCTGATTTATCTGAGGAAGGAAGCTACGATGGCGCCAT-AACTGGATGTGACGG 239
||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 235 TGGAAGGCTGATTTATCTGAGGAAGGAAGCTACGATGATGCCATAAAC-GGATGTGACGG 293
Query 240 TGTTTTCCACGTGGCAACTCCCATGGATTTTGAATCAAAAGATCCTGAGAACGAAGTGAT 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TGTTTTCCACGTGGCAACACCCATGGATTTTGAATCAAAAGATCCTGAGAACGAAGTGAT 353
Query 300 AAAACCGACAGTGAATGGAATGTTGGGGATTATGAAAGCATGTGTTAAGGCAAAGACTGT 359
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 354 AAAGCCGACAGTGAATGGAATGTTGGGGATAATGAAAGCATGTGTTAAGGCAAAGACCGT 413
Query 360 ACGAAGATTCATATTTACTTCATCTGCTGGAACTGTTAATGTAGAAGAACATCAGAAGAG 419
|||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 414 ACGAAGATTCGTATTTACTTCATCTGCCGGAACCGTTAATGTAGAAGAACATCAGAAGAA 473
Query 420 TGTCTACGATGAAAACGATTGGAGCGATCTTGAGTTTATCATGTCCAAAAAGATGACAGG 479
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 474 TGTCTATGATGAAAATGATTGGAGTGATCTTGAGTTTATCATGTCCAAAAAGATGACAGG 533
Query 480 ATGGATGTATTTTGTGTCGAAAACATTAGCCGAGAAAGCAGCGTGGGATTACGCCGAGGA 539
|||||||||||| ||||| ||||| ||||| ||||||||||||||||||| |||||| ||
Sbjct 534 ATGGATGTATTTCGTGTCAAAAACGTTAGCGGAGAAAGCAGCGTGGGATTTCGCCGAAGA 593
Query 540 AAAAGGATTAGATTTCATTAGTATTATTCCAACATTGGTGGTCGGTCCATTCATAACAAC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 594 GAAAGGATTAGATTTCATTAGTATTATTCCAACATTGGTGGTCGGTCCATTCATCACAAC 653
Query 600 ATCTATGCCGCCTAGCCTCATCACCGCGCTCTCTCCTATCACTCGGAACGAGGCACATTA 659
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 654 GTCTATGCCGCCTAGCCTTATCACCGCGCTCTCTCCTATCACTCGGAACGAGGCGCATTA 713
Query 660 CTCGATTATAAGACAAGGACAGTATGTGCATTTGGACGACTTATGCAACTCTCATATCTT 719
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 714 CTCGATCATAAGACAAGGACAGTATGTGCATTTGGACGACTTATGCAACGCTCATATCTT 773
Query 720 CTTATACGAACAAGAAACTGCCAAGGGACGTTATATTTGTTCCTCTCACGATGCTACAAT 779
|||||||||||||| | | ||||||||||||||||||||||||||||| ||||| || ||
Sbjct 774 CTTATACGAACAAGCAGCCGCCAAGGGACGTTATATTTGTTCCTCTCATGATGCAACCAT 833
Query 780 TCTTACTCTCTCAAAACTTCTCAGGCAAAAATACCCCGAATACAACGTGCCTTCAACGTA 839
||||||| |||| ||| ||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 834 TCTTACTATCTCCAAATTTCTCAGGCCAAAATACCCCGAATATAACGTACCTTCAACGTT 893
Query 840 TGAAGGTGTGGATGAGAATCTAAAGAGCATTGAGTTCAGTTCCAAGAAGCTGACTGACAT 899
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 894 TGAAGGTGTTGATGAGAATCTAAAGAGCATTGAATTCAGTTCCAAGAAGCTGACGGACAT 953
Query 900 GGGGTTTAACTTCAAGTATAGTCTCGAGGAAATGTTTATTGAGTCTATTGAGACATGTCG 959
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 954 GGGGTTTAACTTCAAGTATAGTCTCGAGGAAATGTTTATTGAATCTATTGAGACATGTCG 1013
Query 960 TCAAAAGGGTTTTCTCCCGGTTTCTTTATCGTACCAATCCATATCGGAGAACAAAGGTCC 1019
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
Sbjct 1014 TCAAAAGGGTTTTCTCCCGGTTTCATTATCGTACCAATCCATATCGGAGATCAA-G---- 1068
Query 1020 GACGAAGGATGACAATATTGA-GCTCAAAGCCGGAGATGGTTTAACCGATGGTATGATGC 1078
|| ||| |||| || ||||| | ||||| ||||||||||||||||||||||||||| ||
Sbjct 1069 -ACTAAGAATGAAAACATTGACG-TCAAAACCGGAGATGGTTTAACCGATGGTATGAAGC 1126
Query 1079 CATGTAACAAGATAGAACCGGGGCTAACCGGCGAGAGAACCGATGCTCCCATGCCAGCAG 1138
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1127 CATGTAACAAGACAGAAACGGGGATAACCGGCGAGAGAACCGATGCTCCCATGCTAGCAC 1186
Query 1139 AACAGATGTGTGCTTAG 1155
||||||||||||| |||
Sbjct 1187 AACAGATGTGTGCCTAG 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5