BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359494
Length=567
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14020.1 | Symbols: NF-YA6 | nuclear factor Y, subunit A6 | ... 870 0.0
> AT3G14020.1 | Symbols: NF-YA6 | nuclear factor Y, subunit A6
| chr3:4642280-4644301 FORWARD LENGTH=1241
Length=1241
Score = 870 bits (471), Expect = 0.0
Identities = 536/568 (94%), Gaps = 2/568 (0%)
Strand=Plus/Plus
Query 1 GCGGCTTCTTGGCCTTTACACGGCAATGTAACACCACATTTCAATGGTTTCTTGTCTTTT 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 675 GCGGCTTCTTGGCCTTTACACGGCAATGTAACGCCACATTTCAATGGTTTCTTGTCTTTT 734
Query 61 CCGTATGCATCACAACACATGGTGCAGCATCCTCAAATTGGAGGGTTGGTTCCTTGTAGA 120
|| |||||||||||||||| |||||||||||||||||| ||||||||||||| | ||||
Sbjct 735 CCTTATGCATCACAACACACGGTGCAGCATCCTCAAATCAGAGGGTTGGTTCCGTCTAGA 794
Query 121 GTGCCTTTGCCTCACAACATTCCAGAGAACGAACCAATTTTCGTCAATGCAAAACAGTAC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 ATGCCTTTGCCTCACAACATTCCAGAGAACGAACCAATTTTCGTCAATGCAAAACAGTAC 854
Query 181 CAAGCCATTCTCCGCCGCAGACAGCGCCGTGCAAAGCTTGAAGCTCAGAACAAGCTCATC 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 855 CAAGCCATTCTCCGCCGCAGAGAGCGCCGTGCAAAGCTTGAAGCTCAGAACAAGCTCATC 914
Query 241 AAAGTCCGCAAACCATACCTTCACGAGTCGCGCCACCTTCATGCGTTAAAGAGAGCTAGA 300
||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||| ||||
Sbjct 915 AAAGTCCGCAAACCATATCTTCACGAGTCGCGGCACCTCCATGCACTAAAGAGAGTTAGA 974
Query 301 GGCTCTGGTGGGCGTTTCCTCAACACAAAGAAGCTTCAAGAATCAAAATCTTCACAAGCT 360
||||||||||| |||||||||||||||||||||| |||||||||||| || |||| | ||
Sbjct 975 GGCTCTGGTGGACGTTTCCTCAACACAAAGAAGCATCAAGAATCAAATTCCTCACTATCT 1034
Query 361 CCTCCATTCTTGGAT-CCACCGCATGTCTTCAAGAACTCTCCAGGAAAATTCCGGCAACG 419
|||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1035 CCTCCATTCTTG-ATTCCACCTCATGTCTTCAAGAACTCTCCAGGAAAGTTCCGGCAAAT 1093
Query 420 GGACATTTCAAGGGGTGGGGTCGGGTCTAGTGGCTCGACAACATCTTGCTCGGACATAAC 479
||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 1094 GGACATTTCAAGGGGTGGGGTTGTGTCTAGTGTCTCGACAACATCTTGCTCGGACATAAC 1153
Query 480 CGGGAACAACAACGACATGTTCCAACAAAACCCACAATTCGGGTTCTCAGGTTATCCATC 539
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1154 CGGGAACAACAACGACATGTTCCAGCAAAACCCACAATTCAGGTTCTCAGGTTATCCATC 1213
Query 540 AAACCACCATGTCTCAGTCCTCATGTGA 567
||||||||||||||||||||||||||||
Sbjct 1214 AAACCACCATGTCTCAGTCCTCATGTGA 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27226907674
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5