BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470077 Length=1492 Score E Sequences producing significant alignments: (Bits) Value AT1G01970.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2331 0.0 > AT1G01970.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:338291-340077 FORWARD LENGTH=1649 Length=1649 Score = 2331 bits (1262), Expect = 0.0 Identities = 1421/1497 (95%), Gaps = 13/1497 (1%) Strand=Plus/Plus Query 1 CACCGCTCTAAATTCTAATCTAT-C-CACCAGCTCTGTATATGAACTTTGCTTTGCTCAT 58 ||||||||||||||||||||||| | |||||||||||| |||||||||||||| |||||| Sbjct 1 CACCGCTCTAAATTCTAATCTATCCACACCAGCTCTGTCTATGAACTTTGCTTGGCTCAT 60 Query 59 CTCTTTTATCTCCAGTTTCT-CTGAGCTCTGCTTTTTGTAAGTAATCATCAGAGAAGCTC 117 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTCCTTTATCTCCAGTTTCTCCTGAGCTCTGCTTTTTGTAAGTAATCATCAGAGAAGCTC 120 Query 118 AATTCTGTACTTGTATGATCCTTAATTAGGCCTTTGAATATTCCTGACTTGTTTTCTAGA 177 |||||||||||||||||||||| ||||||||||||| | |||| |||||||||||||||| Sbjct 121 AATTCTGTACTTGTATGATCCTCAATTAGGCCTTTG-A-ATTCATGACTTGTTTTCTAGA 178 Query 178 GATTCCGTTCATGTGAAATCATACGGCCGCCAAATTTAGGTTTTT-TCTTTTAGTTCTGG 236 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 179 GATTAGGTTCATGTGAAATCATACGGCCGCCAAATTTAGGTTTTTCTCTTTTAGTTC--- 235 Query 237 TCTGGAGGTCTACAATGGGAATTTATAGCTGCAGCGCAGTGTTGAGCTTCGGCTTGAAAT 296 | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 T-T-GAGGTATACAATGGGAATTTATAGCTGCAGCGCAGTGTTGAGCTTCGGCTTGAAAT 293 Query 297 GTCCATTAGTTATTGCAAGGCATAGGCTTTACCATCGCATGTTTAGACGAATCCCATTAC 356 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 294 GTCCATTAGTTATTGCAAGGCATAGGCTTTACCATCGCATGTTTAGACGAAACCCATTAC 353 Query 357 TTGTAGAATCCCGTCTAAATAGGCTCTGTAGTTGCAAATGTAGTGCGAGTTTGGCCATTG 416 |||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 354 TTGTAGAATCCCATCTTAATAGGCTCTGTAGTTGCAAATGTAATGCGAGTCTGGCCATTG 413 Query 417 GCGAGGTTGTAGAGAAGGAAGATACAGAACAAATCCCTAGGTCTAATTGGGTTGATGTTG 476 |||| ||||| |||||||||||| |||| |||| || ||| | |||||||| |||||||| Sbjct 414 GCGAAGTTGTGGAGAAGGAAGATGCAGAGCAAAGCCGTAGTTTTAATTGGGCTGATGTTG 473 Query 477 GTCTGGATCTGACAGAAGAACAGGATGAGGCAATCACTCGGATTCCTATTAAGATGTCAA 536 ||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 474 GTCTGAATCTGACAGAAGAACAAGACGAGGCAATCACTCGGATTCCTATTAAGATGTCAA 533 Query 537 AACGTTGTCAAGCGCTTATGCGGCAGATTATTTGCTTCTCCAGCGAAAAGGGAAGCTTTT 596 ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 534 AACGTTGTCAAGCGCTTATGCGGCAAATTATTTGCTTCTCCCCCGAAAAGGGAAGCTTTT 593 Query 597 GTGATTTGTTGGGTGCTTGGGTTAGGAGGATGAACCCCATTAGAGCTGACTGGCTTTCTA 656 | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 594 GCGATTTGTTGGGTGCTTGGCTTAGGAGGATGAACCCCATTAGAGCTGACTGGCTTTCTA 653 Query 657 TTCTTAAAGAGTTGAAGAATCTTGACTCTCCCTTTTATATCAAGGTGGCTGAATTTTCGC 716 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 654 TTCTTAAAGAGTTGAAGAATCTTGACTCTCCGTTTTATATCAAGGTGGCTGAATTTTCGC 713 Query 717 TGCTCGAAGATTCCTTTGAAGCGAATGCCCGTGATTATACCAAGATCATCCATTACTATG 776 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 714 TGCTCCAAGATTCCTTTGAAGCGAATGCCCGTGATTATACCAAGATCATCCATTATTATG 773 Query 777 GGAAGCTAAACCAAGTGGAAGACGCTGAAAGAACTCTTCTTTCCATGAAAAATCGAGGCT 836 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 774 GGAAGCTAAACCAAGTAGAAGACGCTGAAAGAACTCTTCTTTCCATGAAAAATCGAGGCT 833 Query 837 TTCTCATTGATCAGGTGACCCTTACTGCAATAGTTCAGTTGTATAGCAAGGCAGGCTATC 896 |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| || Sbjct 834 TTCTTATTGATCAGGTGACCCTTACTGCAATGGTTCAGTTGTACAGCAAGGCAGGCTGTC 893 Query 897 ATAAATTGGCTGAAGAAACTTTCAACGAGATCAAATTGCTTGGGGAGCCACTAGA-TAAT 955 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 894 ATAAATTGGCTGAAGAAACTTTCAACGAGATCAAATTGCTTGGGGAACCACTAGACT-AC 952 Query 956 CGATCATATGGTTCAATGATTATGGCCTACATTAGAGCTGGTGCCCCCGAGAAAGGAGAG 1015 ||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 953 CGATCCTATGGTTCAATGATTATGGCCTACATCAGAGCTGGTGTCCCCGAGAAAGGAGAG 1012 Query 1016 GCTTTACTCCGAGAAATGGACTCCCAAGAGATATGTGCGGGAAGAGAGGTTTACAAGGCA 1075 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1013 TCTCTACTTAGAGAAATGGACTCCCAAGAGATATGTGCGGGAAGAGAGGTTTACAAGGCA 1072 Query 1076 TTGTTGAGAGCTTACTCTATGGGTGGAGACGCGGAAGGAGCTAAGCGGGTCTTTGATGCC 1135 |||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 1073 TTGTTGAGAGATTACTCTATGGGCGGAGACGCGGAAGGAGCTAAGCGGGTTTTTGATGCA 1132 Query 1136 GTTCAAATTGCGGGGATTACTCCTGATGTAAAGCTATGTGGACTGCTCATAAACGCATAC 1195 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1133 GTTCAAATTGCAGGTATTACTCCTGATGTAAAGCTATGTGGACTGCTCATAAACGCATAC 1192 Query 1196 AGTGTCTCAGGTCAGAGTCAGAATGCGCGTTTGGCGTTTGAGAATATGAGAAAAGCGGGA 1255 |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1193 AGTGTCTCGGGTCAGAGCCAGAATGCTCGTTTGGCGTTTGAGAATATGAGAAAAGCGGGA 1252 Query 1256 ATCAAAGCTACTGATAAGTGTGTGGCTCTTGTATTGGCTGCATATGAGAAGGAAGAAAAG 1315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1253 ATCAAAGCTACTGATAAGTGTGTGGCTCTTGTATTGGCTGCATATGAGAAGGAAGAAAAG 1312 Query 1316 CTAAACGAAGCATTAGGGTTCTTGGTTGAGCTTGAGAAAGACTCTATAATGGTAGGGAAA 1375 ||||| ||||| ||||| |||||||| |||||||||||||||||||||||| |||||||| Sbjct 1313 CTAAATGAAGCGTTAGGATTCTTGGTAGAGCTTGAGAAAGACTCTATAATGTTAGGGAAA 1372 Query 1376 GAAGCTTCTGCTGTGTTGGCTCAGTGGTTTAAGAAGCTTGGTGTTGTTGAAGAAGTTGAA 1435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1373 GAAGCTTCTGCTGTGTTGGCTCAGTGGTTTAAGAAGCTTGGTGTTGTTGAAGAAGTTGAA 1432 Query 1436 TTACTTCTTAGGGAGTTTTCATCTAGCCAGTCTCAGCCCCTCTAAGATTGTGGGCTT 1492 ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 1433 TTACTTCTTAGGGAGTTTTCATCTAGCCAGTCTCAACCCCTCTAACATTGTGGGCTT 1489 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73593998970 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5