BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470092
Length=2305
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01830.2 | Symbols: | ARM repeat superfamily protein | chr1... 2911 0.0
> AT1G01830.2 | Symbols: | ARM repeat superfamily protein | chr1:298535-300846
REVERSE LENGTH=2139
Length=2139
Score = 2911 bits (1576), Expect = 0.0
Identities = 1955/2128 (92%), Gaps = 66/2128 (3%)
Strand=Plus/Plus
Query 228 AGTGAGGAACATAGAGAACTGGGGAGA-ATTTTGGATCTTTTTTCTTCAAGTGAAGTT-A 285
||||||||||||| ||||||||||| | ||||||||| |||||||| ||||||||||| |
Sbjct 19 AGTGAGGAACATAAAGAACTGGGGA-ACATTTTGGATATTTTTTCTCCAAGTGAAGTTAA 77
Query 286 AAGTAACAAGGGGACAAGGTAAGGTTTTGGCTTTTC-TTTAT-GTTTCTCACTGAACAT- 342
||| ||||||| |||||||| || | | | || || || | || | ||| ||
Sbjct 78 AAGGAACAAGGAGACAAGGT-TGGAGTCGACCAATCATTGATCG-AGCT-AGAGAA-ATC 133
Query 343 T--CAAGAACTCAAAGTTT-TGATTTTTCTCTTCATCTTCAAAG-AGAATAAATGTTCAA 398
| | | || || || ||| || | | |||| || || || || |||||||||
Sbjct 134 TGGCTACAATTC-AA-TTTCAGA-TGAGGTTTTCAAAAACACAGAAG-ATGAATGTTCAA 189
Query 399 ATAGCGTAAGAAGCTGTGAAttttcttttttc-tttttGTCCAATGGGAACAATGGCAGA 457
||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 190 ATAGCATAAGAAGCTGTGAATTTTCTTCTTTCTTTTTTGTCCAATGGGAACAATGGCAGA 249
Query 458 ATTGGGAACCATGGGAAAGTTTGGAGCCATGGCAGAAGAGCAGCAAGTTAACCAGATGAT 517
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 250 ATTGGGAACCATGGGAAAATTTGGAGCCATGGCAGAAGAGCAGCAAGTTAACCAGATGAT 309
Query 518 CATGGATAAACAATCAGCAGAAGAATGGCTATCGCGCGTCCATTCGCTAATACCATCCGT 577
||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct 310 CATGGATAAACAATCAGTAGAAGAATGGCTATCGCGCGTCAACTCGCTAATACCATCCGT 369
Query 578 CCTCAGCAAGGCAAAAACAGTTAAGAATTTTACAGGACGATGGAAGACGATAATCTCAAA 637
|||||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||| ||
Sbjct 370 CCTCAGCAAGGCAAAAACGGTTAAGAAGTTTACAGGAAGATGGAAGACGATCATCTCGAA 429
Query 638 GATCGAACAGATACCAGCTTGTTTATCTGACCTCTCAAGCCACCCTTGTTTCTCCAAGAA 697
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 430 GATCGAACAGATACCAGCTTGTTTATCTGACCTCTCAAGCCACCCTTGCTTCTCCAAGAA 489
Query 698 CAAGCTCTGCAACGAGCAGTTGCAATCTGTGGCTAAGACTCTTGGTGAAGTGATAGAGCT 757
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 490 CAAGCTCTGCAACGAGCAGTTGCAATCTGTGGCTAAGACGCTTAGTGAAGTGATAGAGCT 549
Query 758 TGCAGAGTTGTGTTCAACTGACAAGTATGAAGGGAAGCTGCGTATGCAGAGCAATCTCGA 817
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 550 TGCAGAGCAGTGTTCAACTGACAAGTATGAAGGGAAGCTGCGTATGCAGAGCGATCTAGA 609
Query 818 TGCTTTATCCGGAAAACTGGATTTGAATCTAAGAGACTGTATGGTTTTGATCAAGACCGG 877
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 610 TTCTTTATCCGGAAAACTGGATTTGAATCTAAGAGACTGTGGGGTTTTGATCAAGACCGG 669
Query 878 CGTTCTTGGTGAAGCTACATTACCTCTTTACATTTCAAGTTCATCAGAAACACCCAAAAT 937
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 670 CGTTCTCGGTGAAGCTACGTTACCTCTTTACATTTCAAGTTCATCGGAAACACCCAAAAT 729
Query 938 TTCCAGTTTAAAAGAACTTCTAGCAAGGCTACAGATTGGTCACTTGGAATCAAAACACAA 997
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 730 TTCCAGTTTAAAAGAACTTCTAGCGAGGCTACAGATCGGTCACTTGGAATCAAAACACAA 789
Query 998 TGCTCTCGAAAGCCTCCTTGGTGCAATGCAAGAGGATGAGAAGATGG---TTATGCCTTT 1054
||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct 790 TGCTCTCGAAAGCCTCCTTGGTGCAATGCAAGAAGATGAAAAGATGGTTCTTATGCCTTT 849
Query 1055 GATCGGACGAGCCAACGTTGCAGCTTTAGTTCAGCTGCTAACAGCAACTTCGACAAGAAT 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 GATCGGACGAGCCAACGTTGCAGCTTTAGTTCAGCTGCTAACAGCAACTTCGACAAGAAT 909
Query 1115 CAGAGAGAAAGCGGTGAATCTGATCAGTGTATTAGCGGAATCAGGACACTGCGACGAATG 1174
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 910 CAGAGAGAAAGCGGTGAATCTGATCAGTGTATTAGCAGAATCAGGACACTGCGACGAATG 969
Query 1175 GCTTATCTCCGAAGGTGTATTGCCTCCGCTAGTGAGGCTAATCGAATCAGGAAGTCTTGA 1234
|||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||
Sbjct 970 GCTTATCTCCGAAGGTGTATTGCCTCCGTTAGTGAGACTAATCGAATCAGGGAGTCTTGA 1029
Query 1235 AACCAAAGAAAAAGCTGCAATTGCGATCCAGAGACTGTCCATGACAGAGGACAACGCACG 1294
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1030 AACCAAAGAAAAAGCTGCGATTGCGATCCAGAGACTGTCCATGACAGAGGAAAACGCACG 1089
Query 1295 GGAAATCGCAGGACACGGCGGAATCACACCACTTATCGATCTCTGTAAAACAGGGGATTC 1354
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1090 GGAAATCGCAGGACACGGCGGAATCACACCGCTTATAGATCTCTGTAAAACAGGGGATTC 1149
Query 1355 TGTGTCACAAGCTGCGTCTGCAGCTGCTCTGAAGAACATGTCAGCAGTTTCAGAGCTCAG 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1150 TGTGTCACAAGCTGCGTCTGCAGCTGCTCTGAAGAACATGTCAGCAGTTTCAGAGCTGAG 1209
Query 1415 ACAATTGCTTGCGGAAGAAGGAATGGTTAGAGTCTCTATCGATCTCCTAAACCATGGGAT 1474
|||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||
Sbjct 1210 ACAATTGCTTGCGGAAGAAGGAATAATTAGAGTCTCGATCGATCTTCTAAACCATGGGAT 1269
Query 1475 ATTGTTAGGATCAAGAGAACACATGGCCGAGTGTTTGCAGAATCTCACTGCAGCGAGCGA 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 ATTGTTAGGATCAAGAGAACACATGGCCGAGTGTTTGCAGAATCTCACTGCAGCGAGCGA 1329
Query 1535 GGCTCTGCGCGAAGCCATTGTTTCGGAAGGAGGAGTTCCGAGTCTCTTGGCTTATCTCGA 1594
||||| || ||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1330 CGCTCTACGTGAAGCCATTGTCTCAGAAGGCGGAGTTCCGAGTCTCTTGGCTTATCTCGA 1389
Query 1595 CGGTCCATTGCCGCAAGAACCGGCCGTAACGGCACTGAGAAATCTAATCCCGTCGGTGAA 1654
|||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1390 CGGTCCGTTGCCGCAACAACCGGCGGTAACGGCACTGAGAAATCTAATCCCGTCGGTGAA 1449
Query 1655 TCCAGAGATATGGGTGGCTCTCAATTTGCTTCCACGACTGACACATGTGCTCAAGTCAGG 1714
||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 1450 TCCAGAGATATGGGTGGCTCTCAATTTGCTTCCACGATTGAGGCATGTACTCAAGTCAGG 1509
Query 1715 ATCTTTAGGCGCGCAACAAGCAGCAGCATCGGCGATTTGCCGTTTCACTTGCTCGCCGGA 1774
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1510 ATCTTTAGGCGCGCAACAAGCAGCAGCATCGGCTATTTGCCGTTTCGCTTGCTCGCCGGA 1569
Query 1775 GAC-AAAGAGGCTAGTGGGCGAATCCGGGTGCATTCCGGAGATGGTGAAACTTCTGGAAT 1833
||| ||| ||||||||||| |||||||| ||||| |||||||| ||||||||||||||||
Sbjct 1570 GACGAAA-AGGCTAGTGGGAGAATCCGGTTGCATCCCGGAGATCGTGAAACTTCTGGAAT 1628
Query 1834 CGAAGTCAAACGGATGTAGAGAAGCGGCGGCTCAGGCGATCGCCGGATTGGT-GACGGAA 1892
||||||||||||||||| ||||||||||||||||||||||||| |||||||| | |||||
Sbjct 1629 CGAAGTCAAACGGATGTCGAGAAGCGGCGGCTCAGGCGATCGCTGGATTGGTAG-CGGAA 1687
Query 1893 GGAAGGATTAGACGGGAACTGAAGAAAGACGGGAAGAGCGT---GACGAATCTGGTGATG 1949
||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1688 GGAAGGATTCGACGGGAACTGAAGAAAGACGGGAAGAGCGTTCTGACGAATTTGGTGATG 1747
Query 1950 TTATTGGATTCGAACCCTGGAAACACGGCGAAGAAGTACGCAGTGGCGGGGCTGTTGGGG 2009
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1748 TTATTGGATTCAAACCCTGGAAACACGGCGAAGAAGTACGCCGTGGCGGGGCTGTTGGGG 1807
Query 2010 TTGTCGGGAAGCGAGAAGAGTAAGAAAATGATGGTGTCGTACGGAGCGATAGGGTATCTG 2069
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1808 ATGTCGGGAAGCGAGAAGAGTAAGAAAATGATGGTGTCGTACGGAGCAATAGGGTATCTG 1867
Query 2070 AAGAAGCTGTCGGAGATGGAAGTAATCGGCGCCGATAAGCTTCTCGAGAAGCTTGAAAGA 2129
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1868 AAGAAGCTGTCGGAGATGGAAGTAATGGGCGCCGATAAGCTTCTCGAGAAGCTTGAAAGA 1927
Query 2130 GGAAAGCTGAGAAGCTTCTTTCACCGGTAAAA--AA-GAT----A-A-A---A-G--GT- 2173
|||||||| ||||||||||||||||||||||| || ||| | | | | | |
Sbjct 1928 GGAAAGCTAAGAAGCTTCTTTCACCGGTAAAACGAACGATGCGGAGACATTGAAGCAGCC 1987
Query 2174 --G-TAA----T--A-T-T-GTCTGATGTAAGTTAATTAACCGTTAGTTAAACTTTACTA 2221
| ||| | | | | |||||||||||||| |||||||||||||||||||||||||
Sbjct 1988 AAGATAAAAAGTGTAATATTGTCTGATGTAAGTTTATTAACCGTTAGTTAAACTTTACTA 2047
Query 2222 -T--T-AAAAAGGTCGGTCCTTTGGGCTGTTTCTCTGAAGCTGATAAATATGGGCTTTAT 2277
| | |||||| | | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2048 GTAATTAAAAAG-T-GTTC-TTTGGGCTGTTTCTCTGAAGCTGATAAATATGGGCTTTAT 2104
Query 2278 ATTAAATACAGGCCCATGAATTTGAATA 2305
|||||| |||||||||||| |||||||
Sbjct 2105 ATTAAA--CAGGCCCATGAAGTTGAATA 2130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114407042055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5