BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470102

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G01725.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   348    2e-95


> AT1G01725.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant 
structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT4G00530.1); 
Has 20 Blast hits to 20 proteins in 7 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:269792-270775 
REVERSE LENGTH=453
Length=453

 Score =  348 bits (188),  Expect = 2e-95
 Identities = 244/269 (91%), Gaps = 12/269 (4%)
 Strand=Plus/Plus

Query  1    CACCGGAATTGTTCTTTCTGGGAACAGCAAGAGAGAGCGATGAATCCCCAAATAGAAAAG  60
            ||||||||||||||||||||||||| | || | | | |||||||||||||||| ||||||
Sbjct  6    CACCGGAATTGTTCTTTCTGGGAAC-G-AA-A-ACATCGATGAATCCCCAAATTGAAAAG  61

Query  61   GTGGTGAGGGTAACGAGTGTGGTGGCCACTGCTGTTGTATCCTACTTCCTCTTAACCGCT  120
            ||||||| |||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct  62   GTGGTGAAGGTAACCAGTGTGGTGGCGACTGCTGTTGTATCGTACTTCCTCTTAACCGCT  121

Query  121  GATTACGGTCCCGAGCCCAACGCTCTCGATCCTATCAGACAGAGGATACTTTCAGCGCAG  180
            ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  122  GATTACGGTCCAGAGCCCAACGCTCTTGATCCTATCAGACAGAGGATACTTTCAGCGCAA  181

Query  181  GATTCCGTGAAAGAGTTCATCTTTCCATCAAAGAAATCCGACAAGT--CAA-GT---G-A  233
            ||||||||||||||||||||||||||||||||||| ||||||||||  ||| |    | |
Sbjct  182  GATTCCGTGAAAGAGTTCATCTTTCCATCAAAGAAGTCCGACAAGTGACAATGGACAGTA  241

Query  234  -CATGTAGCTCAACATCATACTTCATCTT  261
             ||||||||||||||||| ||||||||||
Sbjct  242  ACATGTAGCTCAACATCAGACTTCATCTT  270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5