BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470102 Length=369 Score E Sequences producing significant alignments: (Bits) Value AT1G01725.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 348 2e-95 > AT1G01725.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00530.1); Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:269792-270775 REVERSE LENGTH=453 Length=453 Score = 348 bits (188), Expect = 2e-95 Identities = 244/269 (91%), Gaps = 12/269 (4%) Strand=Plus/Plus Query 1 CACCGGAATTGTTCTTTCTGGGAACAGCAAGAGAGAGCGATGAATCCCCAAATAGAAAAG 60 ||||||||||||||||||||||||| | || | | | |||||||||||||||| |||||| Sbjct 6 CACCGGAATTGTTCTTTCTGGGAAC-G-AA-A-ACATCGATGAATCCCCAAATTGAAAAG 61 Query 61 GTGGTGAGGGTAACGAGTGTGGTGGCCACTGCTGTTGTATCCTACTTCCTCTTAACCGCT 120 ||||||| |||||| ||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 62 GTGGTGAAGGTAACCAGTGTGGTGGCGACTGCTGTTGTATCGTACTTCCTCTTAACCGCT 121 Query 121 GATTACGGTCCCGAGCCCAACGCTCTCGATCCTATCAGACAGAGGATACTTTCAGCGCAG 180 ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 122 GATTACGGTCCAGAGCCCAACGCTCTTGATCCTATCAGACAGAGGATACTTTCAGCGCAA 181 Query 181 GATTCCGTGAAAGAGTTCATCTTTCCATCAAAGAAATCCGACAAGT--CAA-GT---G-A 233 ||||||||||||||||||||||||||||||||||| |||||||||| ||| | | | Sbjct 182 GATTCCGTGAAAGAGTTCATCTTTCCATCAAAGAAGTCCGACAAGTGACAATGGACAGTA 241 Query 234 -CATGTAGCTCAACATCATACTTCATCTT 261 ||||||||||||||||| |||||||||| Sbjct 242 ACATGTAGCTCAACATCAGACTTCATCTT 270 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17342373405 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5