BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470104
Length=2161
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01710.1 | Symbols: | Acyl-CoA thioesterase family protein ... 2392 0.0
> AT1G01710.1 | Symbols: | Acyl-CoA thioesterase family protein
| chr1:262828-267771 FORWARD LENGTH=2492
Length=2492
Score = 2392 bits (1295), Expect = 0.0
Identities = 1414/1470 (96%), Gaps = 14/1470 (1%)
Strand=Plus/Plus
Query 1 ATGAACACCGATTCAGTTGTCGAGTTCCTTGGAAACGTCCCTTTACTCCAGAAATTACCG 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 ATGAACACCGAGTCAGTTGTCGAGTTCCTTGGAAACGTCCCTTTACTCCAGAAATTACCG 182
Query 61 AGCTCTTCTCTGAAGAAAATTGCTCAAGTTGTTGTGCCGAAACGTTACGGGAAAGGGGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 AGCTCTTCTCTGAAGAAAATTGCTCAAGTTGTTGTGCCGAAACGTTACGGGAAAGGGGAT 242
Query 121 TATGTGGTTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAGGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TATGTGGTTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAGGCT 302
Query 181 CAGGTTTCCGGACCAGACGAAGAAGATAACCGCTCCGAATTCCTCTTGAAACAGTATGAT 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 303 CAGGTTTCCGGACCAGACGAAGAAGATAACCGTTCCGAATTCCTCTTGAAACAGTATGAT 362
Query 241 TACTTCGGCCTTGGTTTATCTGGGAACGTTCATTCTGCAGACATTGTTGCTATGTCCCAG 300
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 363 TACTTCGGCGTTGGTTTATCTGGGAACGTTCATTCAGCAGACATTGTTGCTATGTCCCAG 422
Query 301 CTTACATGTTTGGTGTTGCCGCGTGATCATTGTCATTTGCTTGAGACAAATTCAATCTGG 360
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 423 CTTACGTGTTTGGTGTTGCCGCGTGATCACTGTCATTTGCTTGAGACTAATTCCATCTGG 482
Query 361 CAATCGGATACGTCGGTTGAAAAATGCTCTTTAGTGGAACGCATTTTGCAACTCGACCCT 420
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 483 CAATCGGATACGTCACTTGACAAATGCTCTTTAGTGGAACGCATTTTGCAACTCGACCCT 542
Query 421 TTAGAATTGAATATCTTCAGGGGGATCACACTACCTGATGCTCCCATATTTGGAAAGGTT 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 543 TTAGAATTGAATATCTTCAGGGGGATCACACTACCTGATGCTCCTATATTTGGAAAGGTT 602
Query 481 TTTGGAGGACAATTTGTCGGACAGGCACTTGCTGCGGCATCAAAAACTGTTGATTTTCTG 540
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 603 TTTGGAGGACAATTTGTCGGACAGGCTCTTGCTGCGGCGTCAAAAACTGTTGATTTTCTC 662
Query 541 AAGATAGTCCACAGTTTACACTCCTATTTTCTTCTCGTTGGAGATATTGATATCCCCATT 600
||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 663 AAGGTCGTCCACAGTTTACACTCCTATTTTCTTCTCGTTGGAGATATTGACATCCCCATT 722
Query 601 ATTTACCAAGTTCACCGCATACGTGATGGGAACAACTTTGCCACCCGAAGAGTAGATGCA 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 723 ATTTATCAAGTTCACCGCATACGTGATGGGAACAACTTTGCCACCCGAAGAGTTGATGCA 782
Query 661 GTACAGAAAGGAAATATCATATTCATCTTGTTGGCATCATTTCAGAAAGAACAACAAGGA 720
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 783 GTACAGAAAGGAAATATCATATTCATCTTGCTGGCATCATTTCAGAAAGAACAACAAGGA 842
Query 721 TTTGATCACCAGGAGTCAACCATGCCCTCTGTACCAGATCCTAATACGCTTCTATCACTG 780
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 843 TTTGAGCACCAGGAGTCAACCATGCCCTCTGTACCAGATCCTGATACGCTTCTATCACTG 902
Query 781 GAGGAGTTGCGTGAACGCCGTATAACTGATCCTCATTTACCGAGGAGTTATCGGAACAAA 840
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GAGGAGTTGCGTGAAAGCCGTATAACTGATCCTCATTTACCGAGGAGTTATCGGAACAAA 962
Query 841 GTTGCAACTAGAAACTTTGTTCCATGGCCTATAGAGATTCGATTTTGTGAGCCCAGCAAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GTTGCAACTAGAAACTTTGTTCCATGGCCTATAGAGATTCGATTTTGTGAGCCCAGCAAT 1022
Query 901 TCAACAAATCAGACAAAGTCTCCTCCGAGATTGAACTATTGGTTTAGAGCAAAGGGAAGG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TCAACAAATCAGACAAAGTCTCCTCCGAGATTGAACTATTGGTTTAGAGCAAAGGGAAGG 1082
Query 961 CTTTCTGATGACCAAGCTTTGCACCGATGTGTCGTTGCATTTGCCTCGGATTTAATATTT 1020
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 CTTTCTGATGATCAAGCTTTGCACCGATGTGTCGTTGCATTTGCCTCGGATTTAATATTT 1142
Query 1021 TGTGGTGTCGGTTTGAACCCTCACCGCAGAAAAGGGCTGAGATCCGCTGCACTTAGCCTG 1080
|||||||| ||||||||||||||||| ||||||||| ||| |||||| ||||||||||||
Sbjct 1143 TGTGGTGTTGGTTTGAACCCTCACCGGAGAAAAGGGGTGAAATCCGCCGCACTTAGCCTG 1202
Query 1081 GACCATGCGATGTGGTTTCACCGACCTCTAAGAGCCGATGACTGGTTGCTCTATGTGATT 1140
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1203 GACCATGCGATGTGGTTTCACCGACCTCTAAGAGCCGACGAGTGGTTGCTCTATGTGATT 1262
Query 1141 GTGAGTCCAAGTGCGCATGAGACCCGTGGTTTTGTGACTGGTGAAATGTTCAACAGAAAA 1200
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1263 GTGAGTCCAACTGCGCATGAGACCCGTGGTTTTGTGACTGGTCAAATGTTCAACAGGAAA 1322
Query 1201 GGAGAGCTGGTTGTATCATTGACGCAAGAGGCCCTATTAAGAGAGGCTAGACCTCCAAAA 1260
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GGAGAGCTGGTTGTATCATTAACGCAAGAGGCCCTATTAAGAGAGGCTAGACCTCCAAAA 1382
Query 1261 CCCTT-GGTCACGTCGAAGCTCTGAATGGCTCTCAGCCTCACCGTAAGTTAA-TAAGAAG 1318
|||| || |||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 1383 CCCTCCGG-CACGTCGAAGCTCTGAATGGCTCTCA-----AC-GTAAGTTAAATAAGA-- 1433
Query 1319 TTACATTATTACGAGTACAAGGCGACGAATAAAAAAGATCAAAAACCAATCTGGTTGG-T 1377
| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct 1434 T-ACATTATTACGAGTACAAGGCGACGAATAAAAA-GATCAAAAACCAATCTGGGTGGGT 1491
Query 1378 ACTAAATAAAAGATTTTAGTAGACAAACTTATTATGTCAATGTATCACGCTGTATGTACA 1437
|||||||||||||||||| |||||||||| || ||||||||||| |||||||||||||||
Sbjct 1492 ACTAAATAAAAGATTTTATTAGACAAACTCATAATGTCAATGTAGCACGCTGTATGTACA 1551
Query 1438 TTGTTTGATTCCGGCCTTCTCACCTCTATC 1467
||||||||||||||||||||||||||||||
Sbjct 1552 TTGTTTGATTCCGGCCTTCTCACCTCTATC 1581
Score = 676 bits (366), Expect = 0.0
Identities = 502/565 (89%), Gaps = 19/565 (3%)
Strand=Plus/Plus
Query 1610 TCTCCTCGCTTTTGTTCGTCTT-GAAAAACCCTGGGTCTTTTGGGTATCTCTGAGCACAA 1668
|||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| |
Sbjct 1822 TCTCCTCGCTTTTGTTGGTCTTGGAAAAACCCTGGG-ATTTTGGGTATCTCTGAGCACGA 1880
Query 1669 ATTCTAGAGAGTCTCATGGCTTTCG----C------G--GACAGAAATTCCTTGGATTCT 1716
||||| | | |||||||||||||| | | ||| |||||||||||||||
Sbjct 1881 ATTCT--ACATTCTCATGGCTTTCGAACACAGAAATGAAGACCTAAATTCCTTGGATTCG 1938
Query 1717 GAAGAAGATCTGGAGAAACTGGAGTCAGAGGTGGAGCATATGTCGCGCAAGGTTTCCGAG 1776
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1939 GAAGAAGATCTGGAGAAAATGGAGTCAGAGGTGGAGCAAATGTCGCGCAAGGTTTCCGAG 1998
Query 1777 TACAGGAAAAGCCTACCGAGTCATCTGAGCAACACTGTGATTTCTTCTCATAGATCCAAT 1836
||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct 1999 TACAGGAAAAGCCTACCGAGTAATCTGAGCAATTCTGTGATTTCTTCTCGTAGATCCAAT 2058
Query 1837 TTTCCCAACATCAATTCTTTGCTCTTCCGCACAACTACCACAGTTAGGAAGAACTTGTAC 1896
|||||||||||| |||||||| ||| |||||||||| ||||||| |||||||| | ||
Sbjct 2059 TTTCCCAACATCGATTCTTTGGGCTTTCGCACAACTAGCACAGTTTGGAAGAACCTCTAG 2118
Query 1897 TCTCAAGAGATGGAGCACGTCTAGGAGGAATAGAGCAAGAGTCTCGAGATAGCTTTATTC 1956
| |||||||||||||||| | |||| ||||| || ||||| |||||||||||| | ||||
Sbjct 2119 TGTCAAGAGATGGAGCACATATAGGTGGAATCGAACAAGAATCTCGAGATAGCCTGATTC 2178
Query 1957 AGCTCAAAGAAAGAGTGTACGAGAACATTGCCACAGTGCCTCTAGTTGTAGAGAGAATGC 2016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2179 AGCTCAAAGAAAGAGTGTACGAGAACATTGCCACAGTGCCTCTAGTTGTAGAGAGAATGC 2238
Query 2017 GAGAGGGTAAAGAGAGAATCGACAAATCCAATTCTTTCAATGGAACTACTACTATACACC 2076
||||| ||||||||||||||||||| |||| |||||||||||||||||||| | ||||
Sbjct 2239 GAGAGAGTAAAGAGAGAATCGACAAGTCCATTTCTTTCAATGGAACTACTA-TG--CACC 2295
Query 2077 CGGCTTTCACAAGACGAAAAGCTAACTAACCAATCAGTTTCTAGTTCTCCATATTGGCTT 2136
||||||||||||| || ||||||| ||||| ||||||||||| |||||| |||||||||
Sbjct 2296 CGGCTTTCACAAGGCGGAAAGCTAGCTAACTGATCAGTTTCTACTTCTCCCTATTGGCTT 2355
Query 2137 TACCACTCAAACAAAGCTAATGCAT 2161
||||||||||| |||||||||||||
Sbjct 2356 TACCACTCAAAGAAAGCTAATGCAT 2380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107178163575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5