BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470124
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01550.1 | Symbols: BPS1 | Protein of unknown function (DUF7... 1975 0.0
> AT1G01550.1 | Symbols: BPS1 | Protein of unknown function (DUF793)
| chr1:199639-201775 FORWARD LENGTH=1460
Length=1460
Score = 1975 bits (1069), Expect = 0.0
Identities = 1276/1373 (93%), Gaps = 26/1373 (2%)
Strand=Plus/Plus
Query 1 ATCTGCAGAAATACGGCAAC-TTTGTGTTTAGTCATATTAGAACAA-CGCGTTTCAAACT 58
|||||||||||||||||||| |||||| |||||||||| ||||||| |||||| ||||||
Sbjct 13 ATCTGCAGAAATACGGCAACTTTTGTGGTTAGTCATATAAGAACAACCGCGTTACAAACT 72
Query 59 TCTCTCATCTTTCCTGGAAATTCCTGTCCACAAATATTACACGCCTTTAATTTTCG--AC 116
|||||| ||||||||||||||| ||||||||||||||| | | |||||||||||| ||
Sbjct 73 TCTCTCGTCTTTCCTGGAAATTTCTGTCCACAAATATT--A-GTCTTTAATTTTCGAAAC 129
Query 117 CTCTATCAGTCGCGAATTCAAGTTTCATA------GTC-----TTTGTCCACGGATCTAT 165
||| |||| |||||||||||||||||| ||| ||||||||| |||||||
Sbjct 130 TTCTCTCAG--GCGAATTCAAGTTTCATAGTTTTGGTCTAGTTTTTGTCCACCGATCTAT 187
Query 166 CTCTTTAGTTGAAACTTATCTGAATGGCTCGTCCACAAGACCCTCCACGCGGTTTCTTCC 225
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 188 CTCTTTAGTTGAAACTTATCAGAATGGCTCGTCCACAAGACCCTCCACGTGGTTTCTTCC 247
Query 226 CTTTTGGAAACCCTTTCAAGAATCTATCTTCAAAGAACTCGGTACTCTCCCCAAAGCTTC 285
||||||||||||| ||||| ||||||||||| |||||||||||||||||| |||||||||
Sbjct 248 CTTTTGGAAACCCCTTCAAAAATCTATCTTCGAAGAACTCGGTACTCTCCTCAAAGCTTC 307
Query 286 TCTCACTCTTGAACAATTTTGAGACCAACTTAGCATCTTCTATTAGTAAGCTGGTCCCTA 345
|| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 308 TCCCACTCCTGAACAATTTTGAGACCAACTTAGCATCTTCTATTAGTAAGCTTGTCCCTA 367
Query 346 AGGAAAAGAGCGAAATCCTGACTGTTTCATGGATGAAACAAGCCATGAAATCTCTTTGCG 405
||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct 368 AGGAAAAGAGCGATATCCTGACTGTCTCATGGATGAAACAAGCTATGGAATCTCTTTGCG 427
Query 406 AGACACACAATGGTATCAAGACCCTTATAACCGATCTAGAGCTGCCAGTTTCAGATTGGG 465
||||||| ||||||||||||||||||||||||||||| ||||| || || ||||||||||
Sbjct 428 AGACACATAATGGTATCAAGACCCTTATAACCGATCTTGAGCTTCCTGTATCAGATTGGG 487
Query 466 AGGATAAATGGGTTGATGTCTATCTTGACATTAGTGTGAAGCTTCTTGATCTCTGCAATG 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 AGGATAAATGGGTTGATGTCTATCTTGACATTAGTGTGAAGCTTCTTGATCTCTGCAATG 547
Query 526 CCTTTAGCTCTGAGCTAACTCGTCTCAACCAGGGTCATCTCTTACTCCAGTTTGCTTTGC 585
|||||||||||||||| || ||||||||||| |||||||||||||||||||||||| |||
Sbjct 548 CCTTTAGCTCTGAGCTTACCCGTCTCAACCAAGGTCATCTCTTACTCCAGTTTGCTCTGC 607
Query 586 ATAACTTGGAGGCAAACTCTCCTCAGAATCTGTCGAAAGCTCAATCATCACTAGACAGCT 645
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 608 ATAACTTGGAGGCCAACTCTCCTCAGAATCTGTCGAAAGCTCAGTCATCACTAGACAGTT 667
Query 646 GGAAGCAACACATTGTTTCCAAGAACCCAAGAATCGAAAATTGCCGCGCAATCTTGAGCA 705
|||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 668 GGAAGCAACACATTGTCTCCAAGAACCCGAGAATAGAAAATTGCCGTGCAATCTTGAGCA 727
Query 706 GCCTTGTTCAGACCTTGAATCTCCCCAAGGTGAAAAACTCGGCTAAAGGGAAAGTCTTGA 765
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 728 GCCTTGTTCAGACCTTGAATCTCCCCAAGGTGAAAAACTCGGCCAAAGGGAAAGTCTTGA 787
Query 766 TGAGAGCTCTATACGGTGTAAAGGTTAAGACCTTATACATCTCTGGTGTTTTTGCTGCAG 825
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TGAGAGCTCTATATGGTGTAAAGGTTAAGACCTTATACATCTCTGGTGTTTTTGCTGCAG 847
Query 826 CATTCTCAGGTTCATCGCAGAATCTGATGTACCTAACCGTCTCACACGAGCTCCCATGGG 885
| |||||||||||||||||||||||||||||||| || |||||| ||||||| |||||||
Sbjct 848 CGTTCTCAGGTTCATCGCAGAATCTGATGTACCTTACAGTCTCAAACGAGCTTCCATGGG 907
Query 886 CACAATCCTTCATGGAAATGCAGAACACCATGAACGCGGAAATCAAGAACATATTTTTAT 945
||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| |
Sbjct 908 CACAATCATTCATGGAAGTGCAGAACACCATGAACGCAGAAATCAAGAACATATTTTTGT 967
Query 946 CAGACGGGTTAACGGTTCTGAAAGAGCTCGAGGCAGTTGATTCAGGTGTTAAGAAACTCT 1005
|||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct 968 CAGACGGGTTAACGGTTCTGAAAGAGCTAGAGGCAGTTGCTTCAGGTGTCAAGAAACTCT 1027
Query 1006 ACCCTGCGATCCAACAAGGATCAATAGATCCCATATCCCTGCAGCCACTGAGGGACTCGG 1065
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1028 ACCCTGCGATCCAACAAGGATCAATAGATCCCATATCGCTGCAGCCACTGAAGGACTCGG 1087
Query 1066 TCACAGAATTATCGAATGGGCTAGATCTTGTTTCGAAAGAAGTCGATTGTTTCTTCAAGA 1125
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1088 TCACAGAATTATCGAATGGGATAGATCTTGTTTCGAAAGAAGTGGATTGTTTCTTCAAGA 1147
Query 1126 TTCTGTTAACGGGGCGAGACACATTACTAGAGAACCTCAGGTCGATAGGTGCATCAACCC 1185
|||||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1148 TTCTGTTATCGGGGAGAGACACATTACTAGAGAACCTAAGGTCGATGGGTGCATCAACCC 1207
Query 1186 TACAGGCAACATCGCCAAAAAAGGCTGCCGGAAAAAATTACAGAGGATTCTGATAAACAA 1245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1208 TACAGGCAACATCGCCAAAAAAGGCTGCCGGAAAAAATTACAGAGGATTCTGATAAACTA 1267
Query 1246 GTAT-TGTGTGTATAGATGGTTTAACTTTAAGTGTTCCATCTTCTTGGTATTGAATGtat 1304
|| ||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1268 -TAAATGTTTGTACAGATGGTTTTACTTCAAGTGTTCCATCTTCTTGGTATTGAATGTAT 1326
Query 1305 tattat-tattattatt-aGTCTTAGTCGTTTGTATGAGATGCTTTGAAAGTA 1355
||||| | || || | | || ||||||||||||||||||||||||||||||
Sbjct 1327 TATTAGGT-TT-TTGTGCAATCGTAGTCGTTTGTATGAGATGCTTTGAAAGTA 1377
Score = 62.1 bits (33), Expect = 1e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1354 TACCAACTTATCTATATATATTATGAATATCTT 1386
|||||||||||||||||||||||||||||||||
Sbjct 1400 TACCAACTTATCTATATATATTATGAATATCTT 1432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68272741200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5