BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470125
Length=1875
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01540.2 | Symbols: | Protein kinase superfamily protein | ... 2713 0.0
> AT1G01540.2 | Symbols: | Protein kinase superfamily protein
| chr1:195780-198684 FORWARD LENGTH=1920
Length=1920
Score = 2713 bits (1469), Expect = 0.0
Identities = 1771/1908 (93%), Gaps = 56/1908 (3%)
Strand=Plus/Plus
Query 1 AAGCCTTTCTCTTTAAATTCG-T-TCG-TTTATTTACTTTATCAATTTAATCTTTTACAG 57
||||||||||||||||||||| | ||| ||| |||| |||||||||||||||||||
Sbjct 1 AAGCCTTTCTCTTTAAATTCGTTATCGTTTTTTTTATTTTATCAATTTAATCTTTT---- 56
Query 58 TATTTGTTTTTCCTCGATTCCTTGTTTTCGATTCAACATTCGATGCGGTGACAAAGCACA 117
|||||| ||| | | || | | | ||||||||||| ||||||| |||||||||| ||
Sbjct 57 TATTTG--TTT--T-G-TT-C-T-TCCTCGATTCAACACTCGATGCTGTGACAAAGCCCA 107
Query 118 GATTTTGGCCGGAAAGTTTTGTGT-TTTCCGGCG-AGATATGCGAAGAAACCGGAATAAT 175
|||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| |||
Sbjct 108 GATTTTGGCCGGAAAGTTTTGTGTGTTTCCGGCGAAGA-ATGCGAAGAAACCGGAAGAAT 166
Query 176 CTGTAACGGAATCTAAG-GAAAAGTTAAAGTACGATGTCGGTGTACGACGCTGCTTTCCT 234
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 167 CTGTAACGGAATCTAAGCTAAAAGTTAAAGTACGATGTCGGTGTACGACGCTGCTTTCCT 226
Query 235 AAACACTGAGCTTTCGAAACCGACATCGATCTTTGGTCTCCGGCTATGGGTCGTTATCGG 294
|| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 227 TAATACAGAGCTTTCGAAACCGACATCGATTTTTGGTCTCCGGCTATGGGTCGTGATCGG 286
Query 295 AATCTTACTCGGATCTCTAATTGTCATTGCCCTCTTTCTTCTCTCCCTCTGCCTAACTTC 354
||||||||| ||||||||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 287 AATCTTACTTGGATCTCTAATTGTCATCGCACTCTTTCTTCTCTCCCTCTGCTTAACTTC 346
Query 355 TCGCCGGAAAAATCGAAAGCCGAGAGCCGATTTCGCTTCCGCCGCCATCGCTACGCCGCC 414
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 347 TCGCCGGAAAAATCGAAAGCCGAGAGCCGATTTCGCCTCCGCCGCCATCGCTACACCGCC 406
Query 415 GATTTCTAAGGAGATTAAAGAGATCGTTCCTGCGCAGACGCAGTCTGTTCCGGCGGAGAT 474
|||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 407 GATTTCAAAGGAGATTAAAGAGATCGTTCCGGCGCAGAATCAGTCTGTTCCGGCGGAGAT 466
Query 475 CCAGGTCGATATCGGGAAGATCGAACATAGAGTGGTGTTTTCAGATCGAGTATCGAGTGG 534
|||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||
Sbjct 467 CCAGGTCGATATCGGGAAGATCGAGCATCGAGTGGTGTTTTCAGATCGAGTGTCGAGTGG 526
Query 535 TGAGAGTAGAGGAACAGCGAGTGCAAGTGAAACGGCGTCGTATTCCGGCAGCGGAAATTG 594
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 527 TGAGAGTAGAGGAACAGCGAGTGCAAGTGAAACGGCGTCGTATTCCGGTAGCGGGAATTG 586
Query 595 TGGGCCGGAGGTTTCGCATCTTGGATGGGGACGATGGTATACTCTGAGAGAGCTTGAAGC 654
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 587 TGGGCCGGAGGTGTCGCATCTTGGATGGGGCCGATGGTATACTCTGAGAGAGCTTGAAGC 646
Query 655 GGCCACGAATGGGCTTTGTGAAGAGAATGTAATCGGAGAAGGTGGTTACGGGATTGTGTA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GGCCACGAATGGGCTTTGTGAAGAGAATGTAATCGGAGAAGGTGGTTACGGGATTGTGTA 706
Query 715 TCGTGGCGTTTTAACTGATGGAACCAAAGTCGCTGTCAAGAACTTGCTTAACAATAGGGG 774
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 707 TCGTGGCATTTTAACTGATGGAACCAAAGTCGCCGTCAAGAACTTGCTTAACAATAGGGG 766
Query 775 CCAAGCAGAGAAGGAATTCAAAGTAGAAGTGGAGGTCATTGGGCGCGTACGGCACAAGAA 834
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 767 TCAAGCAGAGAAGGAATTCAAAGTAGAAGTGGAAGTCATTGGGCGAGTACGACACAAGAA 826
Query 835 TCTCGTTAGGCTTTTAGGGTATTGTGTCGAAGGTGCATACAGGATGCTCGTGTATGACTT 894
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 827 TCTTGTTAGGCTTTTAGGGTATTGCGTGGAAGGTGCATACAGGATGCTCGTGTATGACTT 886
Query 895 TGTCGATAATGGTAATCTGGAGCAATGGATTCACGGTGATGTTGGCGATGTCAGCCCGCT 954
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 TGTCGACAATGGTAATTTGGAGCAATGGATTCACGGTGATGTTGGCGATGTCAGCCCGCT 946
Query 955 TACTTGGGATATCCGTATGAATATTATACTCGGGATGGCCAAAGGATTGGCGTATCTACA 1014
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 947 AACTTGGGATATACGTATGAATATTATACTGGGGATGGCCAAAGGATTGGCGTATCTACA 1006
Query 1015 CGAGGGTCTTGAGCCAAAAGTTGTTCATCGGGATATAAAATCAAGCAATATCTTGCTTGA 1074
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1007 CGAGGGTCTTGAGCCAAAAGTTGTTCATCGGGATATTAAATCAAGCAATATCTTACTTGA 1066
Query 1075 TCGCCAATGGAATGCTAAGGTTTCGGATTTTGGACTTGCTAAGCTCTTGGGTTCTGAGAG 1134
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1067 TCGCCAATGGAATGCTAAGGTTTCGGATTTTGGACTTGCTAAGCTCTTGGGGTCTGAGAG 1126
Query 1135 CAGTTATGTTACTACTCGTGTGATGGGAACTTTTGGTTATGTAGCACCGGAATATGCTTG 1194
||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1127 CAGTTATGTGACTACTCGTGTGATGGGAACTTTCGGTTATGTAGCACCAGAATACGCTTG 1186
Query 1195 CACTGGAATGTTAAACGAGAAGAGTGATATATATAGCTTCGGGATATTAATCATGGAGAT 1254
||| |||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct 1187 CACCGGAATGTTAAACGAGAAGAGTGATATCTATAGCTTCGGAATACTAATCATGGAGAT 1246
Query 1255 AATCACAGGAAGAAACCCGGTTGATTATAGTCGGCCTCAAGGAGAGACAAATCTAGTGGA 1314
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 AATCACTGGAAGAAACCCGGTTGATTATAGTCGGCCTCAAGGAGAGACAAATCTAGTGGA 1306
Query 1315 TTGGCTGAAATCAATGGTAGGAAACCGAAGATCAGAAGAAGTAGTTGATCCGAAAATACC 1374
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1307 TTGGCTTAAATCAATGGTGGGAAACCGAAGATCAGAAGAAGTTGTTGATCCGAAAATACC 1366
Query 1375 TGAACCACCATCCTCCAAAG-CT-TTAAAACGGGTGTTGCTTGTAGCCTTGCGTTGTGTG 1432
|||||||||||||| |||| || ||||| || |||||||||||||| ||||||||||||
Sbjct 1367 CGAACCACCATCCTC-AAAGGCTCTTAAA-CGAGTGTTGCTTGTAGCTTTGCGTTGTGTG 1424
Query 1433 GATCCTGATGCAAACAAGAGACCTAAAATGGGTCATATCATACATATGCTTGAAGCCGAA 1492
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 GATCCTGATGCGAACAAGAGACCTAAAATGGGTCATATCATACATATGCTTGAAGCCGAA 1484
Query 1493 GATCTACTCTATCGCGATGAACGCCGAACAACTAGGGACCATGGAAGCCGGGAGAGACAA 1552
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1485 GATCTACTCTATCGCGATGAACGCCGAACAACAAGGGACCATGGAAGCCGCGAGAGACAA 1544
Query 1553 GAGACAGCTGTAGTTGCTGCGGGTAATGAAAGCGGCGAGAGCGGTTCACGGCATCATGAG 1612
||||||||||| |||||||| |||| |||||| || ||||||||||||||||||||| ||
Sbjct 1545 GAGACAGCTGTGGTTGCTGCCGGTAGTGAAAGTGGTGAGAGCGGTTCACGGCATCATCAG 1604
Query 1613 CAAAAGCTAGGATGAAAAAAGAG---CAC-------A--------C-----GACCATTAT 1649
||||||| | ||||||||||||| ||| | | |||||||||
Sbjct 1605 CAAAAGCAAAGATGAAAAAAGAGAGTCACTTGGGTTAAGTGATTTCCACACGACCATTAT 1664
Query 1650 ATTTCAAtttttttttCCGGTATATTATTGTCTCACTTACATACATAATATTTTCATTCT 1709
|||||| |||||||||||||||||||||||||||||||||||| ||| | ||| ||||||
Sbjct 1665 ATTTCA-TTTTTTTTTCCGGTATATTATTGTCTCACTTACATA-ATA-T-TTT-CATTCT 1719
Query 1710 TTGGCTCTTCGAGTCTTGGCCTTACGAA-TTAACTTTCTTCTTCTTTGTAACCTTTTGTC 1768
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1720 TTGGCTCTTCGAGTCTTGGCCTTACGAAATTAACATTCTTCTTCTTTGTAACCTTTTGTC 1779
Query 1769 AACGATGCACATTCACATGTCACTTACTAGATATTGTAATATGTAATGTTTGGACCGACC 1828
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1780 AACGAT-CACATTCACATGTCACTTATTAGATATTGTAATATGTAATGTTTGGACCGACG 1838
Query 1829 -CTGAAGCACGAGCACGAGATTGGTCGATGGATCAAACTTATCGCTTT 1875
| |||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 1839 TC-GAAGCATAAGCAGGTGATTGGTCGATGGATCAAACTTATCGCTTT 1885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92820807705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5