BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470149 Length=814 Score E Sequences producing significant alignments: (Bits) Value AT1G01250.1 | Symbols: | Integrase-type DNA-binding superfamil... 1286 0.0 > AT1G01250.1 | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:104491-105330 REVERSE LENGTH=840 Length=840 Score = 1286 bits (696), Expect = 0.0 Identities = 780/819 (95%), Gaps = 12/819 (1%) Strand=Plus/Plus Query 1 CACAACAGAGAATGAAGCTATCACCACCACCACTTACTAACAGCGAACCAACCGCCACCG 60 ||| ||||||||||||||||||| |||||||| |||| |||| ||||||||||||||||| Sbjct 26 CACCACAGAGAATGAAGCTATCATCACCACCAGTTACCAACAACGAACCAACCGCCACCG 85 Query 61 CTTCTGCCGTGAAATCTTGCGGCGGAGTTGGCAAAGAAACCAG--C-TCGACCACGAGGC 117 |||||||||| |||||||||||||||| || ||||||||||| | ||||||||||||| Sbjct 86 CTTCTGCCGTTAAATCTTGCGGCGGAGGAGGTAAAGAAACCAGCTCATCGACCACGAGGC 145 Query 118 ATCCAGTGTACCACGGAGTTCGCAAACGCCGATGGGGAAAATGGGTTTCTGAGATCAGAG 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 146 ATCCAGTGTACCACGGAGTTCGCAAACGCCGATGGGGAAAATGGGTTTCTGAGATCAGAG 205 Query 178 AGCCCCGGAAAAAATCTCGGATTTGGCTCGGATCTTTTCCGGTGCCGGAGATGGCTGCTA 237 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 206 AGCCCCGGAAAAAGTCTCGGATTTGGCTCGGATCTTTTCCGGTGCCGGAGATGGCTGCTA 265 Query 238 AAGCCTACGACGTGGCAGCGTTTTGTCTAAAAGGTAGAAAAGCTCAGCTGAATTTTCCC- 296 | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 266 AGGCCTACGACGTGGCAGCGTTTTGTCTAAAAGGTAGAAAAGCTCAGCTGAA-TTTCCCT 324 Query 297 GACGAAATCGACGATCTACCTCGACCGTCCACGTGTACTCCCAGAGATATCCAAGTCGCG 356 || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 325 GAAGAAATCGAGGATCTACCTCGACCGTCCACGTGTACTCCCAGAGATATCCAAGTCGCA 384 Query 357 GCGGCCAAAGCAGCCAACGGCGTCAAGATCATCAAAATGGGAGATGATGACGTGGCAGAA 416 ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | Sbjct 385 GCGGCCAAAGCAGCCAACGCCGTGAAGATCATCAAAATGGGAGATGATGACGTGGCAGGA 444 Query 417 ATAGACGACGGAGATGATTTCTGGGAAGGCATTGAGCTGCCGGAGCTTATGATGACTGGA 476 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 445 ATAGACGACGGAGATGATTTCTGGGAAGGCATTGAGCTGCCTGAGCTTATGATGAGTGGA 504 Query 477 GGTGGGTGGTCGCCGGAGCCTTTTGTTGCCGGAGATGATGCCACGTGGCTTGTCGACGGA 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 505 GGTGGGTGGTCGCCGGAGCCTTTTGTTGCCGGAGATGATGCCACGTGGCTTGTCGACGGA 564 Query 537 GACTTGTATCAGTATCAGTTCATGGCGTGTCTGTGAGTGTTGCTGTCGATTGTGTCGTAT 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 565 GACTTGTATCAGTATCAGTTCATGGCGTGTCTGTGAGTGTTGCTGTCGATTGTGTCGTAT 624 Query 597 TCGTTATACGTGTACGTTGTATTGTTATTGTGTTGGCTCACTTAATTTAATGCATATGCA 656 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 625 TCGTTATACGTGTACGTTGTATCGTTATTGTGTTGGCTCACTTAATTTAATGCATATGCA 684 Query 657 TGTATATTTTCATTTATTTGTTTCTAGTTTATTGTTTTACGCGATTAATAATTAGATACC 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 685 TGTATATTTTCATTTATTTGTTTCTAGTTTATTGTTTTACGCGATTAATAATTAGATACC 744 Query 717 TGTTTCTTAAGTTAGTTATCAGGTTTCTACG-ATCTTGATATATACGTATAACGGTATAA 775 ||||||| |||||||||||||||||| |||| |||| | | |||||||||| | | Sbjct 745 TGTTTCTCAAGTTAGTTATCAGGTTTGTACGCATCTACAAAAATACGTATAA-G-T---- 798 Query 776 GTATGTTCTTATATACAGTTTTAGTTTGCATAAGTATTG 814 |||||||||||||||||||||| |||||||||||||||| Sbjct 799 GTATGTTCTTATATACAGTTTTTGTTTGCATAAGTATTG 837 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39634741983 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5