BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470152
Length=1806
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01240.1 | Symbols: | unknown protein; INVOLVED IN: N-termi... 1725 0.0
> AT1G01240.1 | Symbols: | unknown protein; INVOLVED IN: N-terminal
protein myristoylation; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G46550.1);
Has 95 Blast hits to 78 proteins in 16 species: Archae - 0;
Bacteria - 2; Metazoa - 11; Fungi - 0; Plants - 80; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:99922-101834
FORWARD LENGTH=1288
Length=1288
Score = 1725 bits (934), Expect = 0.0
Identities = 1102/1181 (93%), Gaps = 19/1181 (2%)
Strand=Plus/Plus
Query 630 TTGTGTCTTAATGTGATAATGGGAGCAGCTGAAGCAAGAGCATTGTGGCAAAGAACAGCA 689
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTGTGTCTTAATGAAATAATGGGAGCAGCTGAAGCAAGAGCATTGTGGCAAAGAACAGCT 178
Query 690 AGTCGTTGCTTTGTTGTTCATGAAGATGCGAAGATGGCTCCGAGGTTAGCTTGTTGCCAA 749
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 179 AGTCGTTGCTTTGTTGTTCATGAGGATGCTAAGATGGCTCCGAGGTTAGCTTGTTGCCAA 238
Query 750 CACCAACATTCTTCTTCGGGCAACACCGAAAAAAGCAGCTTTTCTTCAGGAAGTTTTGGA 809
|||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 239 CACCAACAATCTTCTTCGGGCAACACCGAAAAAAACAGCTTTTCTTCCGGAAGTTTTGGA 298
Query 810 GATTCCTCTGATTTCTCCTCTTGTGATACCAAATGGTGGCTTAAGGGGTCAACTGGATTT 869
||||||||||| || | |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 299 GATTCCTCTGA-TT-T-CTCTTGTGATACCAAATGGTGGCTTAAGGGATCAACTGGTTTT 355
Query 870 GATGAGGAGGTTACAAACTCCTTTTTTGAAGATACCAAATGCAAGAAATTGCAAGAATTT 929
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 356 GATGAGGAGGTTACAAACTCCTTTCTTGAAGATACCAAATGCAAGAAATTGCATGAATTT 415
Query 930 GTCGACTTGATCGGGATACGAGAAGAAGAAGACTACAGCTTTATAAGCAAGAAAGCTGAC 989
|||||||| ||||| ||||||||||||||||||||||||||||| |||||| || |
Sbjct 416 GTCGACTTAATCGGAATACGAGAAGAAGAAGACTACAGCTTTATTAGCAAG-AA----A- 469
Query 990 GCTGACGCTACAACGCCGTGGTGGAGAAGCACGACAGATAAAGATGAATTAGCTCTCTTG 1049
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 470 GCTGACGCTACAACACCGTGGTGGAGAAGCACGACGGATAAAGATGAATTAGCTCTCATG 529
Query 1050 GTGGCGACTAAATCGATTGATCATAATATCCAGAATTGTGATCTTCCTCCCCCTCAGAAA 1109
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 530 GTGGCGACTAAATCGGTTGATCATAATATCCAGAATTGTGATCTTCCTCCACCTCA-AAA 588
Query 1110 A-TCCACAAGAGGATTCACT-GTACTAGTAGTGAGAAGGGGTTTAAACCAGCGGTGCAAT 1167
| |||||||||| ||||||| | | ||| | || || ||||||||| ||||||| |||
Sbjct 589 ACTCCACAAGAGTATTCACTCCT-CGAGTGGAGAAAAAGGGTTTAAAACAGCGGTTAAAT 647
Query 1168 CGCCATGGAAACAAGGAGTTTGG-AGCGATCGGTTTGAGAGATCTTTGAGTTACAATAGT 1226
|||||||||| |||||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct 648 CGCCATGGAAGCAAGGAGTTTGGAAG-GATCGGTTTGAGAGATCTTTGAGTTACAATGGT 706
Query 1227 AGCACAGAGAGCAAGAACACGAGTCCAATGTCTTCCCCTAGAAATGATGATCTAAGCAAA 1286
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 707 AGCACAGAGAGCAAGAACACGAGTCCAATGTCTTCCCCTAGAAGTGATGATCTAAGCAAA 766
Query 1287 GCTCAGCTTTTAGAAGCATTAAGGCATTCTCAAACCAGAGCAAGAGAAGCAGAGAAAGCA 1346
| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct 767 GGTCAGCTTTTAGAAGCACTAAGGCATTCTCAAACCAGGGCAAGAGAAGCAGAGAGAGCA 826
Query 1347 GCAAGAGAAGCTTGCGCTGAGAAAGACCGTATGATAACAATCTTGTTGAAACAGGCGAGT 1406
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 827 GCGAGAGAAGCTTGCGCTGAGAAAGACCGTGTGATAACAATCTTGTTGAAACAAGCGAGT 886
Query 1407 CAGATGTTGGCTTATAAGCAATGGTTAAAGCTTCTAGAAATGGAAGCTCTTTATCTGCag 1466
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 887 CAGATGTTGGCTTATAAGCAATGGTTAAAGCTTCTTGAAATGGAAGCTCTTTATCTGCAG 946
Query 1467 atgaagaaggaagaagaa-aatgaagaacagatcaaaggaatgaatcttaagaagaggaa 1525
|||||||||||||||||| || || |||||| |||||||||||||||| |||||||| ||
Sbjct 947 ATGAAGAAGGAAGAAGAACAA-GAGGAACAGGTCAAAGGAATGAATCTGAAGAAGAGAAA 1005
Query 1526 acaaagagggaagaagaagaaaaaggGTGAGATTGGGAGATATATGATGGCTTTTGCATT 1585
||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1006 ACAGAGAGGGGAGAAGAAGAAAAAGGGTGAGACTGGGAGATATATGATGGCTTTTGCATT 1065
Query 1586 AGGGTTTAGTCTCATTGGTGCTGGTTTGCTCTTAGGTTGGACTGTTGGATGGTTGTTTCC 1645
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1066 AGGGTTTAGTCTCATTGGTGCTGGTTTGCTCTTAGGTTGGACTGTTGGATGGTTGCTTCC 1125
Query 1646 CTTCTAGAATCTTGAAAATGTCTTTTGTTTGATCACTGATCTTTTCAAGAGTTTTAGGTT 1705
||||||||||||||||| |||||| | |||| ||||| ||||||||||||||||||||||
Sbjct 1126 CTTCTAGAATCTTGAAA-TGTCTTCTCTTTGGTCACTCATCTTTTCAAGAGTTTTAGGTT 1184
Query 1706 TTATAACTTTTCACGTTGCCTCTAAAAttgtgtgtatgttgtgttaatgtatgtattgtg 1765
|||||||||||||| || ||||||||||||||||||| || |||||||||||||||||||
Sbjct 1185 TTATAACTTTTCACTTTACCTCTAAAATTGTGTGTATATTTTGTTAATGTATGTATTGTG 1244
Query 1766 tgatatttgtgtTAAATTTAATCTTCTATAGAAGTATATTT 1806
|||| ||||||| |||||||||||||| ||||||| |||||
Sbjct 1245 TGATGTTTGTGT-AAATTTAATCTTCTGTAGAAGTTTATTT 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89356970100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5