BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470177 Length=2366 Score E Sequences producing significant alignments: (Bits) Value AT1G01060.1 | Symbols: LHY, LHY1 | Homeodomain-like superfamily... 3301 0.0 > AT1G01060.1 | Symbols: LHY, LHY1 | Homeodomain-like superfamily protein | chr1:33666-37840 REVERSE LENGTH=2704 Length=2704 Score = 3301 bits (1787), Expect = 0.0 Identities = 2093/2236 (94%), Gaps = 40/2236 (2%) Strand=Plus/Plus Query 2 ttttttt-ttttGCTTCCGATTTGATTATTTCCGGGAACAATGACTTCTCCGGCTAGTTC 60 ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 157 TTTTTTTGTTTTGCTTCCGATTTGATTATTTCCGGGAACGATGACTTCTCCGGGGAGTTC 216 Query 61 CCAGTGAGATGAT--CT-AGTTTGCATATTTGGT-TCCTCCATGGCTACTCTCAAGGGTT 116 || |||||||||| | || ||||||| || || ||||||||||||||||||||||||| Sbjct 217 CCGGTGAGATGATAAGTCAGATTGCATACTT-GTCTCCTCCATGGCTACTCTCAAGGGTT 275 Query 117 TTGGCTGCGATGGATTCGTTTGGTTTCTCTAGAATCTAAAGAGGTTATCACAACGGCTTT 176 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 276 TTGGCTGCGGTGGATTCGTTTGGTTTCTCTAGAATCTAAAGAGGTTATCACAACGGCTTT 335 Query 177 GCAATTTGGAAACTTTCATGTTTGGGGAGATCAAAGATGGTTTCTTTATTATATTTTACT 236 |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 336 GCAATTTGAAAACTTTCATGTTTGGGGAGATCAAAGATGGTTTCTTTTTTATACTTTACT 395 Query 237 TGTTAGAGAGGATTTGAAGCAGCGAATAGCTGCAACGGTCCTGTTATGGATACTAATACA 296 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 396 TGTTAGAGAGGATTTGAAGCAGCGAATAGCTGCACCGGTCCTGTTATGGATACTAATACA 455 Query 297 TCTGGAGAAGAATTATTAGCTAAGGCAAGAAAGCCGTATACAATAACAAAGCAGCGAGAG 356 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 456 TCTGGAGAAGAATTATTAGCTAAGGCAAGAAAGCCATATACAATAACAAAGCAGCGAGAG 515 Query 357 CGATGGACAGATGATGAGCATGAGAGGTTTCTAGAAGCCTTGAGGCTTTATGGAAGAGCT 416 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 516 CGATGGACTGAGGATGAGCATGAGAGGTTTCTAGAAGCCTTGAGGCTTTATGGAAGAGCT 575 Query 417 TGGCAACGAATTGAAGAACATATTGGGACAAAGACTGCTGTTCAGATCAGAAGTCATGCA 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 576 TGGCAACGAATTGAAGAACATATTGGGACAAAGACTGCTGTTCAGATCAGAAGTCATGCA 635 Query 477 CAAAAGTTCTTCACAAAGTTGGAGAAAGAGGCTGAAGCTAAAGGCATCCCTGTTTGCCAA 536 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 636 CAAAAGTTCTTCACAAAGTTGGAGAAAGAGGCTGAAGTTAAAGGCATCCCTGTTTGCCAA 695 Query 537 GCTTTGGACATGGAAATCCCACCTCCTCGTCCTAAACGGAAACCCAATACTCCTTATCCT 596 ||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||| Sbjct 696 GCTTTGGACATAGAAATTCCGCCTCCTCGTCCTAAACGAAAACCCAATACTCCTTATCCT 755 Query 597 CGAAAACATGGGAATAACGGTACATCTTCGTCACAAATATCATCAGCAAAAGATGCAAAA 656 ||||| | |||||| |||||||||||||| || ||| ||||||||||||||||||||||| Sbjct 756 CGAAAGCCTGGGAACAACGGTACATCTTCCTCTCAAGTATCATCAGCAAAAGATGCAAAA 815 Query 657 CTTGTTTCGTCGGCCTCTTCTTCACAGTTTAATCAGTCGTTCTTGGATTTGGAAAAAATG 716 |||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 816 CTTGTTTCATCGGCCTCTTCTTCACAGTTGAATCAGGCGTTCTTGGATTTGGAAAAAATG 875 Query 717 CCGTTTTCTGAGAATACATCAACTGGAAAAGAAAATCAAGATGATAATTGCTCGGGTGTT 776 ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 876 CCGTTCTCTGAGAAAACATCAACTGGAAAAGAAAATCAAGATGAGAATTGCTCGGGTGTT 935 Query 777 TCTACTGTGAACAAGTATCCCTTACCAAAGAAAAAGGTAAGTGCCGATATTGAAACAAGT 836 |||||||||||||||||||||||||||| |||| ||||||||| ||| |||||||||||| Sbjct 936 TCTACTGTGAACAAGTATCCCTTACCAACGAAACAGGTAAGTGGCGACATTGAAACAAGT 995 Query 837 AAGACCTCAACCGTGGACAACGCGGTTCAAGATGCTCCCAAGAAGAACAAACACAAAGAT 896 ||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 996 AAGACCTCAACTGTGGACAACGCGGTTCAAGATGTTCCCAAGAAGAACAAAGACAAAGAT 1055 Query 897 GGTAACGATGGTACTG-T-T-CACAGCGTGCAAAACTACCCTTGGCATTTCCACGCGGGT 953 ||||||||||||||| | | |||||| |||||||||||||||||||||||||||| | | Sbjct 1056 GGTAACGATGGTACTACTGTGCACAGCATGCAAAACTACCCTTGGCATTTCCACGCAGAT 1115 Query 954 ATTGTGAACGGGAATATAGCAAAATGCCCTCAAAATCATCCCTTAGGTATGGTATCTCAA 1013 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1116 ATTGTGAACGGGAATATAGCAAAATGCCCTCAAAATCATCCCTCAGGTATGGTATCTCAA 1175 Query 1014 GACTTCATGTTTCATCCTATGAGAGAAGAAAGTCACGGGCACGCAAATCTTCAAGCTACA 1073 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1176 GACTTCATGTTTCATCCTATGAGAGAAGAAACTCACGGGCACGCAAATCTTCAAGCTACA 1235 Query 1074 ACAGCATCTGCTAC-A-----GCTTCTCATCAAGCGTTTCCAGCTTGTCATTCACAGGAT 1127 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 1236 ACAGCATCTGCTACTACTACAGCTTCTCATCAAGCGTTTCCAGCTTGTCATTCACAGGAT 1295 Query 1128 GATTACCATTCGTTTCTACAGATGTCTTCTACTTTCTCCAATCTTATTATGTCAACTCTC 1187 ||||||| ||||||||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct 1296 GATTACCGTTCGTTTCTCCAGATATCATCTACTTTCTCCAATCTTATTATGTCAACTCTC 1355 Query 1188 CTACAGAATCCTGCTGCTCATGCTGCAGCTACATTTACTGCTTCGGTCTGGCCTTATGCG 1247 |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1356 CTACAGAATCCTGCAGCTCATGCTGCAGCTACATTCGCTGCTTCGGTCTGGCCTTATGCG 1415 Query 1248 AATGTTGGGAATTCTGGAGATTCGTCAACCCCAGTGAGCTCTTCTCCTCCAAGTATAGCT 1307 | ||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||| || Sbjct 1416 AGTGTCGGGAATTCTGGTGATTCATCAACCCCAATGAGCTCTTCTCCTCCAAGTATAACT 1475 Query 1308 GCCATTGCAGCTGCTACAGTAGCTGCTGCAACTGCTTGGTGGGCTTCTCATGGACTTCTT 1367 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1476 GCCATTGCCGCTGCTACAGTAGCTGCTGCAACTGCTTGGTGGGCTTCTCATGGACTTCTT 1535 Query 1368 CCTGTATGTGCTCCAGCTCCAATTACATGTGTTCCATT---A-C-----CA-----A-CT 1412 |||||||| |||||||||||||| |||||||||||||| | | || | || Sbjct 1536 CCTGTATGCGCTCCAGCTCCAATAACATGTGTTCCATTCTCAACTGTTGCAGTTCCAACT 1595 Query 1413 CCAGCAATGACTGAGATGGATACCGTTGAAAATGCTCAACTACCGCTTGAGAAACAAAAC 1472 |||||||||||||| |||||||||||||||||| |||||| | | |||||||||||||| Sbjct 1596 CCAGCAATGACTGAAATGGATACCGTTGAAAATACTCAAC--C-GTTTGAGAAACAAAAC 1652 Query 1473 ACAGCTCTGCAAGATCAAAACGTGGCTTCAAAATCTCCAGCTTCATCATCCGATGATTCA 1532 ||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| Sbjct 1653 ACAGCTCTGCAAGATCAAAACTTGGCTTCGAAATCTCCAGCTTCATCATCTGATGATTCA 1712 Query 1533 GAGGAGACTGGAGTAACCAAGATAAATGTCGACTCAAAAACCCAAGG-TGATAAGGTTGG 1591 || |||||||||||||||||| |||||| ||||||||||||| || | |||||| ||| Sbjct 1713 GATGAGACTGGAGTAACCAAGCTAAATGCCGACTCAAAAACC-AATGATGATAAAATTGA 1771 Query 1592 GGAGGTTGTTGTTGCTGCTGCTGTGCATGATTCAAACACTACCCAGAAGAAAAATATGGT 1651 ||||||||||||| |||| ||||||||||| ||||||||| |||||||||||||| | || Sbjct 1772 GGAGGTTGTTGTTACTGCCGCTGTGCATGACTCAAACACTGCCCAGAAGAAAAATCTTGT 1831 Query 1652 GGATCGGTCATCGTGTGGCTCAAACACACCTTCAGGGAGTGACGCGGAAACAGATGCATT 1711 ||| || ||||| ||||||||||| |||||||||||||||||||| ||||| |||||||| Sbjct 1832 GGACCGCTCATCCTGTGGCTCAAATACACCTTCAGGGAGTGACGCAGAAACTGATGCATT 1891 Query 1712 AGATAAATTGGAGAAAGATAAAGAGGATGTGAAGGAGACAGATGAAAATCAGCCAGATGT 1771 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1892 AGATAAAATGGAGAAAGATAAAGAGGATGTGAAGGAGACAGATGAGAATCAGCCAGATGT 1951 Query 1772 TATTGAGTTAAATAACCGTAAGATTAAAATGAGAGacaacaacaacaacaacaacaacCC 1831 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 1952 TATTGAGTTAAATAACCGTAAGATTAAAATGAGAGACAACAACAGCAACAACAATG-C-- 2008 Query 1832 AACTACTGATTCATGGAAGGAAGTCTCCGAAGAGGGTCGTATAGCGTTTCAGGCTCTCTT 1891 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2009 AACTACTGATTCGTGGAAGGAAGTCTCCGAAGAGGGTCGTATAGCGTTTCAGGCTCTCTT 2068 Query 1892 TGCAAGAGAAAAATTGCCTCAAAGCTTTTCACCTCGTCAAGTGGCAGAGAATGTGAATAG 1951 ||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 2069 TGCAAGAGAAAGATTGCCTCAAAGCTTTTCGCCTCCTCAAGTGGCAGAGAATGTGAATAG 2128 Query 1952 AAAACAAAGTGACACAGCCA-TGCCATTGGCTCCTAATTTCAAAAGCCAGGATTCTTGTG 2010 ||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| Sbjct 2129 AAAACAAAGTGACAC-GTCAATGCCATTGGCTCCTAATTTCAAAAGCCAGGATTCTTGTG 2187 Query 2011 CTGCAGACCAAGAAAGAGTAGCAATGATCGGTGTTGGACCAGGCAAGAGTCTTAAAACGA 2070 |||||||||||||| |||||| |||||||||||||||| || |||||||||||||||||| Sbjct 2188 CTGCAGACCAAGAAGGAGTAGTAATGATCGGTGTTGGAACATGCAAGAGTCTTAAAACGA 2247 Query 2071 GACAGACAGGGTTTAAGCCATACAAGAGATGTTCAATGGAACTGAAAGAGAGCCAAGTTG 2130 |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2248 GACAGACAGGATTTAAGCCATACAAGAGATGTTCAATGGAAGTGAAAGAGAGCCAAGTTG 2307 Query 2131 GGAACACAAACAATCAAAGTGATGAAAAAGTCTGCAAAAGGCTTCGATTGGAAGGAGAAG 2190 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2308 GGAACATAAACAATCAAAGTGATGAAAAAGTCTGCAAAAGGCTTCGATTGGAAGGAGAAG 2367 Query 2191 CTTCTACATGACAGAC 2206 |||||||||||||||| Sbjct 2368 CTTCTACATGACAGAC 2383 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117469275300 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5