BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470240
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02816.1 | Symbols: | Protein of unknown function, DUF538 |... 968 0.0
> AT1G02816.1 | Symbols: | Protein of unknown function, DUF538
| chr1:621461-622469 FORWARD LENGTH=1009
Length=1009
Score = 968 bits (524), Expect = 0.0
Identities = 639/691 (92%), Gaps = 21/691 (3%)
Strand=Plus/Plus
Query 142 CATGACTCTGCTTCCGATTTCAAtcttcttcttcttcttcttctt-c-tt--TTTGTCAT 197
|||||||||||||||||||||||||||||||||||| || || || | || || | |||
Sbjct 176 CATGACTCTGCTTCCGATTTCAATCTTCTTCTTCTTTTTATT-TTGCATTCCTTCGCCAT 234
Query 198 TAATCGCCGCCGCCGCT-ACAGATGACGATATACCGACGGCGTACACTCTCCTCCAAAGC 256
|||| |||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 235 TAAT---CGCCGCCGCTAAC-GATGACGATATACCGACGGCGTACACTCTCCTCCAAAGC 290
Query 257 TACAACTTTCCCGTCGGGATCCTTCCTAAAGGAGTCGTATCGTATGATCTAGATGAATCC 316
|||||||||||||||||||| |||||||||||||| || || |||||| ||||| ||||
Sbjct 291 TACAACTTTCCCGTCGGGATTCTTCCTAAAGGAGTGGTGTCATATGATTTAGATAAATCT 350
Query 317 ACTGG-CAGATTCCACGCCTATTTCAACAAATCGTGCAGTTTCGCTCTTCAAGGTTCTTA 375
||||| || ||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 351 ACTGGTCA-ATTCCACGCGTATTTCAACAAATCGTGCAGTTTCGCTCTTCAAGGCTCTTA 409
Query 376 CCAATTGGATTACAAATCGACAATCTCTGGCTACATATCGGAGAACAAGATCACGAAACT 435
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 410 CCAATTGGATTACAAATCGACAATCTCTGGATACATATCGGAGAACAAGATCACGAAGCT 469
Query 436 TACCGGCGTGAAGGTGAAAGTTCTCTTTTTGTGGCTCAATATCGTTGAGGTTATTAGGAA 495
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 470 TACCGGCGTGAAGGTGAAAGTTCTCTTCTTGTGGCTCAACATCGTTGAGGTTATTAGGAA 529
Query 496 CGAAGACGAACTCGAGTTCTCCGTCGGGATCACATCGGCGAACTTCGAGATCGATGAGTT 555
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 530 CGGAGACGAACTCGAGTTCTCCGTTGGGATCACATCGGCGAACTTCGAGATCGATGAGTT 589
Query 556 TTACGAGTCGCCACAGTGTGGTTGCGGATTTGATTGCAAAACGAAGACGAAGACTTTGGG 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 TTACGAGTCGCCACAGTGTGGTTGCGGATTTGATTGCAAAACGAAGACGAAGACTTTGGG 649
Query 616 AAGAAACCCTTTTGTTTCTTCGGTTTAAAGGTTAAGACTTTTTATTGCAAAATCTGAACT 675
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 650 AAGAAACCCTTTTGTTTCTTCGGTTTAAAGGTTAAGACTTCTTATTGCAGAATCTGAACT 709
Query 676 CTTTGGATGCTCTATGTTCTTTCTCCAATCATT-AAtttttttttCGATCAATGCTCTTT 734
||||||||| | ||||||||||||||||||||| ||||||| | ||||||||| ||
Sbjct 710 CTTTGGATGATTTATGTTCTTTCTCCAATCATTTAATTTTT----CAATCAATGCT-TT- 763
Query 735 GTTTGTATCTCTTCGTAGGATTGAACCGATGAA-TTGTATTTATGAACCGACCAGGAATA 793
|||||||||||||| |||||| |||||||| || ||||||||||||||||| ||||||||
Sbjct 764 GTTTGTATCTCTTCTTAGGATCGAACCGAT-AAGTTGTATTTATGAACCGATCAGGAATA 822
Query 794 AAACGGTGGTGGGAAAAGTTGTTTCTTATGT 824
|||| ||||||| ||||||| |||||||||
Sbjct 823 AAACAGTGGTGGAAAAAGTTAATTCTTATGT 853
Score = 150 bits (81), Expect = 2e-35
Identities = 124/143 (87%), Gaps = 9/143 (6%)
Strand=Plus/Plus
Query 1 CTGATCAGATGGGCCAGC--TAGAAAAGTCTCTCACGTCTGTCCCAGAGATTTCTTTTTA 58
||||||||||| |||||| || ||||||||||||||||| ||||||| | | | |||
Sbjct 1 CTGATCAGATGTGCCAGCTATACAAAAGTCTCTCACGTCTCTCCCAGA-A-AAC-TCTTA 57
Query 59 TTTTCTCGCCGAGAAAGTGACGGAAAACGAAATCCAAACTGGATAAATCTAAAACCTAAA 118
|||| |||||||||||||||||||||||||||||||||| |||||| | ||| ||||||
Sbjct 58 TTTTATCGCCGAGAAAGTGACGGAAAACGAAATCCAAACGGGATAA-T--AAA-CCTAAA 113
Query 119 ACCTAAAGTAGTGATTTTGCTAC 141
||||||| ||||||||| |||||
Sbjct 114 ACCTAAATTAGTGATTTAGCTAC 136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44306517654
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5