BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470338 Length=794 Score E Sequences producing significant alignments: (Bits) Value AT1G03680.1 | Symbols: ATHM1, TRX-M1, ATM1, THM1 | thioredoxin ... 987 0.0 > AT1G03680.1 | Symbols: ATHM1, TRX-M1, ATM1, THM1 | thioredoxin M-type 1 | chr1:916819-918064 REVERSE LENGTH=910 Length=910 Score = 987 bits (534), Expect = 0.0 Identities = 704/782 (90%), Gaps = 27/782 (3%) Strand=Plus/Plus Query 23 ATCTTCTTC-TTCTGGATATTATTACATTTGGGACTCAAGAAG-AATCGAATCT-T-GAT 78 ||||||||| || |||||||||||||||||||||||||||||| |||||||||| | | | Sbjct 98 ATCTTCTTCGTT-TGGATATTATTACATTTGGGACTCAAGAAGAAATCGAATCTATCG-T 155 Query 79 -TGCT-t--ctct-ctctctctctatctctatctctctctACACAACAATGGCTGCTTTC 133 || | | | | || ||||||||||||| |||||| |||||||||||||||||||| | Sbjct 156 GTG-TGTAGAT-TGCT-TCTCTCTATCTCT-TCTCTCGCTACACAACAATGGCTGCTTAC 211 Query 134 ACTTGTACTTCCCGTCCGCCGATTTCAATCCGGTCAGAGATGAGAATCGCTTCCTCGCCG 193 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 212 ACGTGTACTTCCCGTCCGCCGATTTCTATCCGGTCAGAGATGAGAATCGCTTCCTCGCCG 271 Query 194 ACGTGTTCCTTCTCTACTCGACAGATGTTCTCTGTGTTACCTGAATCCTGCGGATTGAGG 253 ||| |||||||||||||||||||||||||||||||||| || ||||| ||||||||||| Sbjct 272 ACGGGTTCCTTCTCTACTCGACAGATGTTCTCTGTGTTGCCGGAATCGAGCGGATTGAGG 331 Query 254 ACTCGCGTTTCTCTCTCTTCGGTTTCGAAGAATTCTAGGGTTTCCCGATTACGACGAGGC 313 |||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||| Sbjct 332 ACTCGCGTTTCTCTATCTTCACTCTCGAAGAATTCTAGGGTTTCCCGATTACGACGAGGC 391 Query 314 GTTATCTGCGAAGCCCAGGAAACTGCAACAGGAATTCCAGTGGTCAACGATTCAACATGG 373 |||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 392 GTTATCTGTGAAGCTCAGGACACTGCTACAGGAATTCCAGTGGTCAACGATTCAACATGG 451 Query 374 GAGTCTCTAGTTCTCAAGGCTGATGAGCCTGTGTTTGTCGACTTTTGGGCTCCATGGTGT 433 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 452 GACTCTCTAGTTCTCAAGGCTGATGAGCCTGTGTTTGTCGACTTTTGGGCACCATGGTGT 511 Query 434 GGACCTTGCAAAATGATTGATCCCATTGTCAACGAATTGGCACAACAGTATGCAGGGAAG 493 ||||| |||||||||||||||||||||||||||||| | || ||| |||| || || || Sbjct 512 GGACCCTGCAAAATGATTGATCCCATTGTCAACGAACTCGCGCAAAAGTACGCCGGCCAG 571 Query 494 TTCAAGTTCTACAAACTTAACACTGATGATTCTCCTTCAACCCCTAGCCAGTATGGTGTT 553 ||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| Sbjct 572 TTCAAGTTCTACAAACTTAACACTGATGAGTCTCCTGCAACCCCTGGCCAGTATGGTGTT 631 Query 554 AGAAGCATCCCAACTATCATGATCTTTGTCAAGGGTGAGAAGAAGGATACAATCATCGGT 613 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 632 AGAAGCATCCCAACTATCATGATCTTTGTCAATGGTGAGAAGAAGGATACAATCATCGGT 691 Query 614 GCAGTGTCTAAATCCATTTTAGCAACCAGCATCGACAAATTCTTGTAATCAAGT-CTATT 672 || || |||||| || |||||||||||||||| ||||||||||||||| || | ||| | Sbjct 692 GCTGTCTCTAAAGACACTTTAGCAACCAGCATCAACAAATTCTTGTAATGAACTACTAGT 751 Query 673 AAAGGTCTCTCTTTTCTCTGTATCTCTCAAGTCTGAACCTTTTACCTATCTACTCCCCCA 732 | || ||||||||||||||||||||| | ||| ||||||||||||||||||| | Sbjct 752 CACTGT-TCTCTTTTCTCTGTATCTCTCGACTCTCTACCTTTTACCTATCTACTC----A 806 Query 733 CTCATCACTGTTCATCTAGACTTGTATGATAATATATGATGTCTCAGATTTTCAGAAATT 792 ||| | ||||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 807 -TCA-C--TGTTCATCTAGACTTGTATGATAATAT--GATGTCTCAGGTTTTCAGAATTT 860 Query 793 GA 794 || Sbjct 861 GA 862 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38630059043 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5