BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470343
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03710.1 | Symbols: | Cystatin/monellin superfamily protein... 665 0.0
> AT1G03710.1 | Symbols: | Cystatin/monellin superfamily protein
| chr1:923426-924726 FORWARD LENGTH=957
Length=957
Score = 665 bits (360), Expect = 0.0
Identities = 457/502 (91%), Gaps = 14/502 (3%)
Strand=Plus/Plus
Query 168 GGATGCGAGGAAGAGGAGAGAAACAGTGAAAGCGACGACCAGGTTTGGGGTTTCGATAGT 227
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 175 GGATGCGAGGAAGAGGAGAGAAACAGTGAAAGCGATGACCAGGTTTGGGGTTTCGATAGT 234
Query 228 TTCGAAGGATCAGACTACGAGTCGCCTGATGAGCCTCCCGAGGATGACGAGGAACTT-GA 286
|||||||| ||||||||||||||||||||||||||||| |||||||| |||||| || ||
Sbjct 235 TTCGAAGGCTCAGACTACGAGTCGCCTGATGAGCCTCCTGAGGATGATGAGGAA-TTGGA 293
Query 287 GTTACGTCGATACACGCGCCATTACCACGAGAGCCAGGGTTTCAAAGTGGATAAAGATAA 346
||| ||||||||||||||| |||||||||||||| ||||||||||||| | |||||
Sbjct 294 GTTTCGTCGATACACGCGCTATTACCACGAGAGCAAGGGTTTCAAAGT-G-----GATAA 347
Query 347 GCTGCCTAAATATCTTACTTACGGATTACGCGGTCTCGATCTGGATGCCCACTTCTTCAA 406
||| |||||| || || ||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 348 GCTTCCTAAACATGTTTGTTACGGAATACGCCCTCTCGATCTGGATGCCCCCTTCTTCAA 407
Query 407 GCCAAACCTCACGGGGCGTGAGTACATGGAGATTATGGCCAATGTGGCTATTGACAAATA 466
||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 408 GCCAAACATGACGGGGCGTGACTACATGGAGATTATGGCCAATGTGGCTATTGACAAATA 467
Query 467 CAACCAAGTAGAGAATAAGACGGTTAC-GCTTGATCATATAGTGAGGGTCGT-GGTGCAA 524
|||||||||||||||||||||| ||| |||||||||||| |||||||| | |||||||
Sbjct 468 CAACCAAGTAGAGAATAAGACG-TTAAAGCTTGATCATATCGTGAGGGT-GACGGTGCAA 525
Query 525 ATGAGCTATGGA-ATCAAAGGTTATATTACTTTCATGGCTAAGGAGTCCCCTGAAGGAGA 583
||||||||||| | ||||| ||||||||| |||||||||||||| || ||| | |||||
Sbjct 526 TTGAGCTATGGATA-CAAAGCTTATATTACATTCATGGCTAAGGAATCTCCTCATGGAGA 584
Query 584 GCTTGTGGAGTATCAAGCTAAGGCTGAGCGCAAGGCATGGCAAAGAAACATTCATCCCAT 643
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 585 GCTTGTGGAGTATCAAGCTAAGGCTGAGCGCAAGGCATGGCAAAGAAACATTCACCCCAT 644
Query 644 CTTTTGCAGACCAGCTCCCTCT 665
||||||||||||||||| ||||
Sbjct 645 CTTTTGCAGACCAGCTCGCTCT 666
Score = 102 bits (55), Expect = 5e-21
Identities = 142/178 (80%), Gaps = 29/178 (16%)
Strand=Plus/Plus
Query 1 GGGAAAGAATGGATCCCAAATCCAGTGATGTCGATACGATTGAGCCGGAGGTGATGGATG 60
|||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
Sbjct 59 GGGAAAAAATGGATCCCAAATCCAGTGATGTCGATACGGTTGAGCCCGAGGTGATGGACG 118
Query 61 CATCTTGCTCGGATCTCTCTTCGTCTTGTGGAAAACGCAAGGCCGAAACGATTTCA-CCG 119
|| | ||||||||| | | ||| |||||||||||||||||| | |||
Sbjct 119 CA----G-----ATCTCTCTT--T---G---AAA-CGCAAGGCCGAAACGATTG-AGCCG 159
Query 120 G---AT---GA--A-GGATGCGAGGAAGAGGAGAGAGACAGTGAAAGCGACGACCAGG 168
| || || | ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 160 GCGGATTCCGATGAAGGATGCGAGGAAGAGGAGAGAAACAGTGAAAGCGATGACCAGG 217
Score = 71.3 bits (38), Expect = 1e-11
Identities = 44/47 (94%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 724 AATGCCCTATGGACTAAAACTTTTATGATCAGAACTCGATTTATGTT 770
||||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct 776 AATGCCCTATGTACTCAAGCTTTTATGATCAGAACTCGATTTATGTT 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37424439515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5