BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470401 Length=1037 Score E Sequences producing significant alignments: (Bits) Value AT1G04250.1 | Symbols: AXR3, IAA17 | AUX/IAA transcriptional re... 1672 0.0 AT3G04730.1 | Symbols: IAA16 | indoleacetic acid-induced protei... 73.1 5e-12 > AT1G04250.1 | Symbols: AXR3, IAA17 | AUX/IAA transcriptional regulator family protein | chr1:1136258-1138613 FORWARD LENGTH=1087 Length=1087 Score = 1672 bits (905), Expect = 0.0 Identities = 1004/1050 (96%), Gaps = 14/1050 (1%) Strand=Plus/Plus Query 1 AGACAGAGATATAATACAGACTCATATCACTTTGTATTATTTGAGTGTTTTTATAAAACC 60 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 AGACAGAGATATAATACAGACTCATCTCACTTTGTATTATTTGAGTGTTTTTATAAAACC 60 Query 61 ATTTTTCCATTTTCCTCATCACCTTCCC-A-aagaag-a-a--gaag-agaagaaagTTT 113 |||||||||| ||||||||||||||||| | |||||| | | ||| ||||||||| || Sbjct 61 ATTTTTCCATCTTCCTCATCACCTTCCCAAGAAGAAGAACACCAAAGAAGAAGAAAGGTT 120 Query 114 AATAATGATGGGCAGTGTCGAGCTGAATCTGAAGGAGACTGAACTGTGTCTTGGTCTTCC 173 |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 121 AATAATGATGGGCAGTGTCGAGCTGAATCTGAGGGAGACTGAGCTGTGTCTTGGTCTTCC 180 Query 174 CGGTGGAGATACGGTGGCTCCGGTAACCGGAAACAAGAGAGGGTTCTCAGAGACGGTTGA 233 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGGTGGAGATACAGTGGCTCCGGTAACCGGAAACAAGAGAGGGTTCTCAGAGACGGTTGA 240 Query 234 TCTGAAGCTGAATCTTAACAATGAGCCTGAAAACAAGGAAGGGTCTACGACTCATGACGT 293 ||||||||| ||||| || |||||||||| |||||||||||| ||||||||||||||||| Sbjct 241 TCTGAAGCTAAATCTGAATAATGAGCCTGCAAACAAGGAAGGATCTACGACTCATGACGT 300 Query 294 CGTGACTTTTGATTCCAAGGAGAAGAGTTCTTGTCCCAAAGATCCAGCCAAGCCTCCTTC 353 |||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| | Sbjct 301 CGTGACTTTTGATTCCAAGGAGAAGAGTGCTTGTCCTAAAGATCCAGCCAAACCTCCGGC 360 Query 354 CAAGGCACAAGTTGTGGGATGGCCACCGGTGAGATCATACCGGAAGAACGTGATGGTTTC 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CAAGGCACAAGTTGTGGGATGGCCACCGGTGAGATCATACCGGAAGAACGTGATGGTTTC 420 Query 414 GTGCCAAAAATCAAGCGGTGGCCCGGAGGCGGCGGCGTTCGTGAAGGTGTCAATGGACGG 473 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 421 CTGCCAAAAATCAAGCGGTGGCCCGGAGGCGGCGGCGTTCGTGAAGGTATCAATGGACGG 480 Query 474 AGCACCGTACTTGAGGAAAGTAGATTTGAGGATGTATAAAAGCTACGACGAGCTCTCTAA 533 ||||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||||| Sbjct 481 AGCACCGTACTTGAGGAAAATCGATTTGAGGATGTATAAAAGCTACGATGAGCTTTCTAA 540 Query 534 TGCTTTGTCCAACATGTTCAGCTCTTTTACCATGGGAAAACATGGAGGAGAAGAAGGAAT 593 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 541 TGCTTTGTCCAACATGTTCAGCTCTTTTACCATGGGCAAACATGGAGGAGAAGAAGGAAT 600 Query 594 GATAGACTTCATGAATGAGAGGAAATTGATGGATTTAGTGAATAGTTGGGACTATGTTCC 653 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 601 GATAGACTTCATGAATGAGAGGAAATTGATGGATTTGGTGAATAGCTGGGACTATGTTCC 660 Query 654 CTCTTATGAAGACAAAGACGGTGATTGGATGCTCGTCGGCGACGTTCCTTGGCCAATGTT 713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CTCTTATGAAGACAAAGACGGTGATTGGATGCTCGTCGGCGACGTTCCTTGGCCAATGTT 720 Query 714 CGTTGATACATGCAAGCGTTTACGTCTCATGAAAGGATCTGATGCCATTGGGCTCGCACC 773 ||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct 721 CGTCGATACATGCAAGCGTTTACGTCTCATGAAAGGATCGGATGCCATTGGTCTCGCTCC 780 Query 774 GAGGGCGATGGAGAAGTGCAAGAGCAGAGCTTGAAGTC--A--AAAAGGATAAGTGGTAA 829 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| | Sbjct 781 GAGGGCGATGGAGAAGTGCAAGAGCAGAGCTTGAAGTCAAATTAAAAGGATAAGTGGT-A 839 Query 830 T-GATTATATATTTGATTAACACATTGATTGGTGTTAATTG-ttttttttttCTTACGAT 887 | ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 840 TCGATTATATATTTGATTAACACATTGATTGGTGTTAATTGCTCTTTTTTTTCTTACGAT 899 Query 888 GAAATACATTGTTCAGTTTCTTTTGATTGTCTGTGTTTTGATCTGGATTTGGTATGTAGA 947 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 GAAATACATTGTTCAGTTTCTTTTGATTGTCTGTGTTTTGATCTGGATTTGGTATGTAGA 959 Query 948 TATAGTTTGTATGCTATTATGTGTAATGAACTTAAGTTAAATATTTGAGACATTTGTAAT 1007 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 TATAGTTTGTATGCTATTATGTGTAATGAACTTAAGTTAAATATTTGAGACATTTGTAAT 1019 Query 1008 GGAAAATGTGTAATAATTTGAACATCTTAT 1037 |||||||||||||||||||||||||| ||| Sbjct 1020 GGAAAATGTGTAATAATTTGAACATCCTAT 1049 > AT3G04730.1 | Symbols: IAA16 | indoleacetic acid-induced protein 16 | chr3:1288612-1290602 REVERSE LENGTH=1279 Length=1279 Score = 73.1 bits (39), Expect = 5e-12 Identities = 62/72 (86%), Gaps = 5/72 (7%) Strand=Plus/Plus Query 353 CCAAGGCACAAGTTGTGGGATGGCCACCGGTGA-GATCATACCGGAAGAACGTGATGGTT 411 ||||||||||||||||||||||||||||||| | |||| | ||| |||||||| ||| | Sbjct 387 CCAAGGCACAAGTTGTGGGATGGCCACCGGT-ACGATCTTTCCGCAAGAACGTCATG-TC 444 Query 412 TCGTGCCAAAAA 423 || |||||||| Sbjct 445 -CG-GCCAAAAA 454 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50836956764 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5