BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470417 Length=2435 Score E Sequences producing significant alignments: (Bits) Value AT1G04400.2 | Symbols: CRY2, FHA, AT-PHH1, PHH1, ATCRY2 | crypt... 3378 0.0 > AT1G04400.2 | Symbols: CRY2, FHA, AT-PHH1, PHH1, ATCRY2 | cryptochrome 2 | chr1:1185556-1188276 REVERSE LENGTH=2264 Length=2264 Score = 3378 bits (1829), Expect = 0.0 Identities = 2024/2115 (96%), Gaps = 26/2115 (1%) Strand=Plus/Plus Query 328 GAACTA-TCTTCTGGAGGAGCTTGAGGTCTGAAATCATGGAAAAACTTGGTTAGAGTGTG 386 |||||| || |||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 157 GAACTATTC-TCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTAGAGTGTG 215 Query 387 GAA-TTTAGCTGATTTGGTC-TTGATTCATCTCTGATCATAGCAACTATGACGACGGACA 444 ||| ||||||||||||| || ||||||||||| |||||||| |||||||| || ||||| Sbjct 216 GAATTTTAGCTGATTTGATCTTTGATTCATCTGTGATCATAATAACTATGAAGATGGACA 275 Query 445 AAAAGACTATAGTTTGGTTTAGAAGAGACCTAAGGATTGAGGATAATCCTGCATTAGCAG 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 276 AAAAGACTATAGTTTGGTTTAGAAGAGACCTAAGGATTGAGGATAATCCTGCATTAGCAG 335 Query 505 CTGCTGCTCACGAAGGATCTGTTTTTCCTGTCTTCATTTGGTGTCCTGAAGAAGAAGGAC 564 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 336 CAGCTGCTCACGAAGGATCTGTTTTTCCTGTCTTCATTTGGTGTCCTGAAGAAGAAGGAC 395 Query 565 AGTTTTATCCAGGAAGAGCTTCAAGATGGTGGATGAAACAATCACTTGCTCACTTATCTC 624 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 396 AGTTTTATCCTGGAAGAGCTTCAAGATGGTGGATGAAACAATCACTTGCTCACTTATCTC 455 Query 625 AATCCTTGAAGGCTCTTGGATCTGACCTCACTTTAATCAAAACCCATAACACAG-TTTCA 683 |||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| Sbjct 456 AATCCTTGAAGGCTCTTGGATCTGACCTCACTTTAATCAAAACCCACAACAC-GATTTCA 514 Query 684 GCTATCTTGGATTGTATCCGCGTTACTGGTGCTACAAAAGTCGTCTTTAACCATCTCTAT 743 || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 515 GCGATCTTGGATTGTATCCGCGTTACCGGTGCTACAAAAGTCGTCTTTAACCACCTCTAT 574 Query 744 GATCCTGTTTCGTTAGTTCGGGACCATACCGTAAAGGAGAAGCTGGTGGAACGTGGGATC 803 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 575 GATCCTGTTTCGTTAGTTCGGGACCATACCGTAAAGGAGAAGCTGGTGGAACGTGGGATC 634 Query 804 TCTGTGCAAAGCTACAATGGAGATCTATTGTATGAACCGTGGGAGATATACTGCGAAAAG 863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 635 TCTGTGCAAAGCTACAATGGAGATCTATTGTATGAACCGTGGGAGATATACTGCGAAAAG 694 Query 864 GGCAAACCTTTTACGAGTTTCAGTTCTTACTGGAAGAAATGCTTAGATATGTCGATTGAA 923 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 695 GGCAAACCTTTTACGAGTTTCAATTCTTACTGGAAGAAATGCTTAGATATGTCGATTGAA 754 Query 924 TCTGTTATGTTTCCTCCTCCTTGGCGGTTGATGCCAATAACTGCAGCGGCTGAAGCGGTT 983 || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 755 TCCGTTATGCTTCCTCCTCCTTGGCGGTTGATGCCAATAACTGCAGCGGCTGAAGCGATT 814 Query 984 TGGGCATGTTCGATTGAAGAACTAGGGCTAGAAAATGAGGCCGAAAAACCGAGCAATGCG 1043 ||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 815 TGGGCGTGTTCGATTGAAGAACTAGGGCTGGAGAATGAGGCCGAGAAACCGAGCAATGCG 874 Query 1044 TTGTTAACTAGAGCTTGGTCTCCAGGATGGAGCAATGCTGATAAGATACTTAATGAGTTC 1103 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 875 TTGTTAACTAGAGCTTGGTCTCCAGGATGGAGCAATGCTGATAAGTTACTAAATGAGTTC 934 Query 1104 ATCGAGAAGCAGCTGATAGATTACGCAAAGAACAGCAA-AAAGGTTGTTGGGAATTCAAC 1162 |||||||||||| |||||||||| |||||||||||||| |||| ||||||||||||| || Sbjct 935 ATCGAGAAGCAGTTGATAGATTATGCAAAGAACAGCAAGAAAG-TTGTTGGGAATTCTAC 993 Query 1163 CTCACTGCTATCTCCATATCTCCATTTCGGGGAAATAAGCGTCAGACACGTTTTCCAGTG 1222 ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 994 TTCACTACTTTCTCCGTATCTCCATTTCGGGGAAATAAGCGTCAGACACGTTTTCCAGTG 1053 Query 1223 TGCCCGGATGAAACAAATCATATGGGCTAGAGATAAGAACAGTGAAGGAGAAGAAAGTGC 1282 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1054 TGCCCGGATGAAACAAATTATATGGGCAAGAGATAAGAACAGTGAAGGAGAAGAAAGTGC 1113 Query 1283 AGATCTTTTTCTTAGAGGAATCGGTCTAAGAGAGTATTCTCGGTATATATGTTTCAACTT 1342 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1114 AGATCTTTTTCTTAGGGGAATCGGTTTAAGAGAGTATTCTCGGTATATATGTTTCAACTT 1173 Query 1343 CCCGTTTACTCACGAGCAATCGTTGTTGAGTCATCTTCGGTTTTTCCCTTGGGATGCTGA 1402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1174 CCCGTTTACTCACGAGCAATCGTTGTTGAGTCATCTTCGGTTTTTCCCTTGGGATGCTGA 1233 Query 1403 TGTTGATAAGTTCAAGGCCTGGAGACAAGGCAGGACTGGTTATCCGTTGGTGGATGCCGG 1462 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1234 TGTTGATAAGTTCAAGGCCTGGAGACAAGGCAGGACCGGTTATCCGTTGGTGGATGCCGG 1293 Query 1463 AATGAGAGAGCTTTGGGCTACTGGATGGATGCATAACAGAATAAGAGTGATTGTTTCTAG 1522 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1294 AATGAGAGAGCTTTGGGCTACCGGATGGATGCATAACAGAATAAGAGTGATTGTTTCAAG 1353 Query 1523 CTTTGCTGTGAAGTTTCTTCTCCTTCCATGGAAATGGGGAATGAAGTATTTCTGGGATAC 1582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1354 CTTTGCTGTGAAGTTTCTTCTCCTTCCATGGAAATGGGGAATGAAGTATTTCTGGGATAC 1413 Query 1583 ACTTTTGGATGCTGATTTGGAATGTGACATCCTTGGCTGGCAGTATATCTCTGGGAGCAT 1642 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1414 ACTTTTGGATGCTGATTTGGAATGTGACATCCTTGGCTGGCAGTATATCTCTGGGAGTAT 1473 Query 1643 ACCCGATGGCCATGAGCTTGATCGCTTGGACAATCCCGCGTTACAAGGCGCTAAATATGA 1702 ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1474 CCCCGATGGCCACGAGCTTGATCGCTTGGACAATCCCGCGTTACAAGGCGCCAAATATGA 1533 Query 1703 CCCAGAAGGTGAGTACATAAGGCAATGGCTTCCCGAGCTTGCGAGATTGCCAACTGAATG 1762 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1534 CCCAGAAGGTGAGTACATAAGGCAATGGCTTCCCGAGCTTGCGAGATTGCCAACTGAATG 1593 Query 1763 GATACATCATCCATGGGACGCTCCGTTAACCGTACTCAAAGCTTCCGGGGTGGAACTCGG 1822 ||| |||||||||||||||||||| |||||||||||||||||||| || ||||||||||| Sbjct 1594 GATCCATCATCCATGGGACGCTCCTTTAACCGTACTCAAAGCTTCTGGTGTGGAACTCGG 1653 Query 1823 AACAAACTATGCAAAACCCATTGTAGACATCGACACAGCTCGTGAGCTACTCGCTAAAGC 1882 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1654 AACAAACTATGCGAAACCCATTGTAGACATCGACACAGCTCGTGAGCTACTAGCTAAAGC 1713 Query 1883 CATATCAAGAACCCGTGAAGCACAGATCATGATCGGAGCAGCACCTGATGAGATTGTAGC 1942 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1714 TATTTCAAGAACCCGTGAAGCACAGATCATGATCGGAGCAGCACCTGATGAGATTGTAGC 1773 Query 1943 AGATAGCTTTGAGGCCTTAGAAGCTAATACAATTAAAGAACCTGGTCTTTGCCCATCTGT 2002 ||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1774 AGATAGCTTCGAGGCCTTAGGGGCTAATACCATTAAAGAACCTGGTCTTTGCCCATCTGT 1833 Query 2003 GTCTTCTAATGACCAACAAGTACCTTCGGCTGTTCGTTACAACGGGTCAAAGAGAGTGAA 2062 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1834 GTCTTCTAATGACCAACAAGTACCTTCGGCTGTTCGTTACAACGGGTCAAAGAGAGTGAA 1893 Query 2063 ACCTGGGGAAGAAGAAGAGAGAGACATGAAGAAATCTAGAGGATTCGATGAAAGGGAATT 2122 ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 1894 ACCTGAGGAAGAAGAAGAGAGAGACATGAAGAAATCTAGGGGATTCGATGAAAGGGAGTT 1953 Query 2123 GTTTTCGACTGCTGAATCTTCTTCTTCTTCGAGTGTGTTCTTT-GTTTCGCATTCTTGCT 2181 ||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| Sbjct 1954 GTTTTCGACTGCTGAATCTTCTTCTTCTTCGAGTGTGTT-TTTCGTTTCGCAGTCTTGCT 2012 Query 2182 CGTTGGCATCAGAAGGGAAGAATTTGGAAGGTATTCAAGATTCATCTGATCAGCTTACCA 2241 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 2013 CGTTGGCATCAGAAGGGAAGAATCTGGAAGGTATTCAAGATTCATCTGATCAGATTACTA 2072 Query 2242 CAAGTATGGGAAAAAATGGTTGCAAATGATCAAAATAAGCTTTATGTGCTGTTATAAAGC 2301 ||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 2073 CAAGTTTGGGAAAAAATGGTTGCAAATGATCAAAATAA--T----GTGCTGTTATAAAGC 2126 Query 2302 CTAACATGTAGATGTGTGAATGTGTCTTGAAGTTTTAACTCTCTT-TTTCCTTTTGCTTA 2360 |||||||||||||||||||||||||||| || |||||| || |||||||||| ||| Sbjct 2127 CTAACATGTAGATGTGTGAATGTGTCTT----TT--AACTCT-TTGTTTCCTTTTGGTTA 2179 Query 2361 TACTCAAAAGGATATATGGTTGCATAAACATATAATGCTGATATTATTTCAATTGGCTAT 2420 ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 2180 TACTCAAAAGGATAT--GATTGCATAAACATATAATGCTGATATTATTTCAATTGGCTAT 2237 Query 2421 GAATAAATTATACAT 2435 ||||||| ||||||| Sbjct 2238 GAATAAAATATACAT 2252 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 120933112905 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5