BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470433 Length=1286 Score E Sequences producing significant alignments: (Bits) Value AT1G04530.1 | Symbols: TPR4 | Tetratricopeptide repeat (TPR)-li... 1685 0.0 > AT1G04530.1 | Symbols: TPR4 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1234176-1236034 REVERSE LENGTH=1352 Length=1352 Score = 1685 bits (912), Expect = 0.0 Identities = 1046/1110 (94%), Gaps = 12/1110 (1%) Strand=Plus/Plus Query 1 TCTTCGTTCGGTCGTTGTCTTGGGGTCCTCCGAATCAA-AACCCACAAATAACACTCGAG 59 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 5 TCTTCGTTTGGTCGTTGTCTTGGGGTCCTCCGAATCAAGAACCCACAAATAACAATCGAG 64 Query 60 GAATCTGTGAACGACGACCCAATTGAACCTAAAGTTGAAGACTTTGAACGGATTTAGAAA 119 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 65 GAATCTGTGAACGACGACCCAATTGAACCTAAAGTTGAAGACTTTGGACGGATTTAGAAA 124 Query 120 GAAAAACACAAAAAGATGCTGAAGAGCGAGGCCTCTCTCTCGAGTTACTGCGATTCCGGA 179 |||| || |||||||||||||||||||||||| |||||||||| ||||||||| || ||| Sbjct 125 GAAAGACCCAAAAAGATGCTGAAGAGCGAGGCATCTCTCTCGATTTACTGCGACTCTGGA 184 Query 180 GATGGGTTCAAATCCGAAGATCCGTTGACTGGAATCGAGGAGAATTTGGAGAGAACCGTT 239 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 185 GATGGGTTCAAATCCGAAGATCCGGTGACTGGAATCGAGGAGAATTTGGAGAGAACGGTT 244 Query 240 ACGATTGGCGATTCTATCGACGGCGACGGGTTCAGTTTTGCGAAACACAAGGAAGAAGAT 299 |||||||| ||| |||| ||||||| || ||||||||||||||||||||||||||||||| Sbjct 245 ACGATTGGTGATGCTATTGACGGCGGCGAGTTCAGTTTTGCGAAACACAAGGAAGAAGAT 304 Query 300 AGCAGTGAAGGTGAGAGAGGTGTTTTGGAAGAGGTTATTAAGAAGCTAGGGATTGGTAAG 359 || |||||||||||||||||||||| |||||||||||||||||||| ||||||||| | Sbjct 305 AGTGGTGAAGGTGAGAGAGGTGTTTTTGAAGAGGTTATTAAGAAGCTTGGGATTGGTGTG 364 Query 360 AGAGATGAACAAGGTTTTGAGATTGAAAGACCACCAAGTCCTCCTATGCATTTAGCTGCA 419 |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 365 AGAGATGAACTAGGTTTTGAGATTGAAAGACCACCAAGCCCTCCTATGCATTTAGCTGCA 424 Query 420 GGGTTAGGTATTGATAAGTTTGATTTGTATGGTAATGAGA-CGAAATTCGACTTACCGGG 478 |||||||| ||||||||||||||||||||||||| ||||| | |||||||| || ||||| Sbjct 425 GGGTTAGGAATTGATAAGTTTGATTTGTATGGTAGTGAGATC-AAATTCGATTTGCCGGG 483 Query 479 TTTCGATGATGAGAATTGTGGTGATTACTACAAAGGAATGCTCGAGGAGTATCCATTGCA 538 || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 484 TTACGATGATAAGAATTGTGGTGATTACTACAAAGGAATGCTCGAGGAGTATCCATTGCA 543 Query 539 TCCTTTGCTTCTCAAAAACTATGCCAAGTTCTTGGAGTATAAAGGAGATCTTAGTGGAGC 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 TCCTTTGCTTCTCAAAAACTATGCCAAGTTCTTGGAGTATAAAGGAGATCTTAGTGGAGC 603 Query 599 AGAAGAGTATTATCATAAGTGTACTGTAGTTGAGCCTTGTGATGGAGTAGCTTTAGCAAA 658 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 604 AGAAGAGTATTATCATAAGTGTACTGTAGTTGAGCCTAGTGATGGAGTAGCTTTAGCAAA 663 Query 659 CTATGGTAGATTAGTAATGAAGCTTCACCAAGATGAAGCTAAAGCCATGAGCTACTTTGA 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 664 CTATGGTAGATTAGTAATGAAGCTTCACCAAGATGAAGCTAAAGCCATGAGCTACTTTGA 723 Query 719 ACGTGCAGTTCAAGCTTCTCCTGATGATAGCAATGTTCTTGGAGCATATGCTAGTTTCCT 778 ||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| Sbjct 724 ACGTGCAGTTCAAGCATCTCCTGATGATAGCATTGTTCTTGCAGCATATGCTAGTTTCCT 783 Query 779 CTGGGAGATAAACGTGgatgacgacgatgaggatgatgatga---tgatga-G--TCTTC 832 |||||||||||||| |||||| || ||||||||||||||||| |||||| | ||||| Sbjct 784 CTGGGAGATAAACGCGGATGATGATGATGAGGATGATGATGAGGATGATGATGAGTCTTC 843 Query 833 TGGGCAAGGAAAAGAAGAATTTGAGCCTGATGCAGCGGAGAAAAG-CAACTCGAGCTTGT 891 ||| ||||||||||| ||||||||| |||||||||||| |||||| ||| || ||||||| Sbjct 844 TGGACAAGGAAAAGACGAATTTGAGGCTGATGCAGCGG-GAAAAGGCAAATCAAGCTTGT 902 Query 892 CCAAGACAGATGATGGAGAAACGCTATGCAGATACGCGAAAGCGTTCTGGAGTATAAATA 951 |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 903 CCAAGACAGAAGATGGAGAAACGCTATGCAGATACGCGAAGGCGTTCTGGAGTATTAATA 962 Query 952 ATGACCACGAGAAGGCCTTGTTCTACTTTGAGAAGGCCGTTGAAGCCTCTCCAAATGACA 1011 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 963 ATGACCATGAGAAGGCCTTGTTCTACTTTGAGAAGGCCGTTGAAGCCTCTCCAAATGATA 1022 Query 1012 GCATTATTCTTGGAGAGTATGCTCGGTTTTTATGGGAAATAGAAGAATGATCATTAAGAA 1071 ||||||||||||||||||| |||||||| |||||||||||||| |||||| ||| ||||| Sbjct 1023 GCATTATTCTTGGAGAGTACGCTCGGTTCTTATGGGAAATAGATGAATGACCATCAAGAA 1082 Query 1072 GAGAAAGAAGATGTCTATAGCTGAGGTAAA 1101 ||||| |||||||||||||||||||||||| Sbjct 1083 GAGAA-GAAGATGTCTATAGCTGAGGTAAA 1111 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63252686700 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5