BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470434
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04540.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 1557 0.0
> AT1G04540.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr1:1237256-1239061 FORWARD LENGTH=1806
Length=1806
Score = 1557 bits (843), Expect = 0.0
Identities = 1021/1107 (92%), Gaps = 12/1107 (1%)
Strand=Plus/Plus
Query 1 ATGTCGATGTTGTTCCCATCATTTCAGTTGCTAGAGCTGAACATAATCTCAGCTCAGGAC 60
||||||||| |||||||||| |||||||||||||| || |||||||| ||||||||||||
Sbjct 1 ATGTCGATGATGTTCCCATCGTTTCAGTTGCTAGAACTTAACATAATATCAGCTCAGGAC 60
Query 61 TTGGCTCCTGTCGCTCGCAAAACAAAGACTTATGCTGTCGCTTGGGTTCATTCCGAGCGT 120
|||||||| ||||| ||||| |||||||||||||| || ||||||||||||||||| |||
Sbjct 61 TTGGCTCCCGTCGCACGCAAGACAAAGACTTATGCGGTTGCTTGGGTTCATTCCGAACGT 120
Query 121 AAACTTACTACACGTGTCGACTACAATGGTGGAACGAACCCAACTTGGAATGACAAATTC 180
|||||||| || ||||||||||| ||||| ||||| |||||||||||||| |||||||||
Sbjct 121 AAACTTACCACCCGTGTCGACTATAATGGCGGAACAAACCCAACTTGGAACGACAAATTC 180
Query 181 GTATTCAGAGTCAACGAAGAATTTCTCTACGCCGATACTTCAGCTGTGGTTATTGAAATT 240
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 181 GTATTCAGAGTCAACGAAGAATTTCTCTACGCTGATACTTCAGCAGTGGTTATCGAAATA 240
Query 241 TACGCCTTGCATTGGTTCCGAGATGTTCATGTAGGAACAGTTCGTGTCCTCGTCAGCAAT 300
|||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 241 TACGCCTTGCATTGGTTCAGAGATGTTCATGTAGGAACAGTTCGTGTCCTCATTAGCAAC 300
Query 301 CTCATTCCCCCTAATCGTCGTCCAGGATACAGAACCAGCAACAATGAATATCGTCGCACC 360
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 CTCATTCCTCCTAATCGCCGTCCAGGATACAGAACCAGCAACAATGAATATCGTCGTACC 360
Query 361 CCACCTCCAGGAATGAGATTTGTCGCACTTCAGGTTCGTCGTACTTCAGGTCGACCTCAG 420
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 361 CCACCTCCAGGAATGAGATTTGTTGCGCTTCAAGTTCGTCGTACTTCAGGTCGACCTCAG 420
Query 421 GGGATTTTGAACATTGGTGTTGGATTAATTGATGGTTCTATGCGGAGTATGCCGCTTTAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGGATTTTGAACATTGGTGTTGGATTAATTGATGGTTCTATGCGGAGTATGCCGCTTTAT 480
Query 481 ACGCATATGGATTCATCTGCTGTGGGATATAGAGATTTGCTCGGAGAAGAAGATCATCAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACGCATATGGATTCATCTGCTGTGGGATATAGAGATTTGCTCGGAGAAGAAGATCATCAT 540
Query 541 CTGCAACATTTGCATTTAAATAGCAACAAAGGCAGCTCAAAGAATCCACAATCTCCGTCT 600
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 541 CTACAACATTTGCATTTAAATAGCAACAAAGGGAGCTCAAAGAATCCACAATCTCCATCT 600
Query 601 TCTCGACAATACCAATCCGTAATCTCAAGACCTGAGCTCCGTCGTACGAAGAGCGATTCA 660
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 601 TCTCGACAGTACCAATCCGTAATCTCAAGGCCTGAGCTCCGTCGTACGAAGAGCGATACA 660
Query 661 AGTTCTATGGTTGTTTCAGATCTTCTTAGTAGAGCTGAACGAAGTCGTTTAGCTAACAGA 720
||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| |||
Sbjct 661 AGTTCTATGGTTGTTTCGGATCTTCTTAGCAGGGCTGAACGGAGTCGTTTAGCTAATAGA 720
Query 721 AAACCGGCGAGTGCATTAGTGAGCAGTGACTCTGAAACTCTACCCACCACGACGGATTCT 780
|||| ||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 721 CAACCAGCGAGTGCAATAGTGAGCAGTGAATCTGAAACTCTTCCCACCACGACAGATTCT 780
Query 781 GATGAGaaaaaaaT-GAATGAGTACATACCTCCTAGTAAAAACCCTA-AGGTTCCAAGGC 838
|||||||||||| | || |||||| | ||||||||||||||||| || || |||||||||
Sbjct 781 GATGAGAAAAAA-TCGAGTGAGTATACACCTCCTAGTAAAAACCTTAGAG-TTCCAAGGC 838
Query 839 AACGATACAATTCGATTGATTCAGATCTCATAGATTCGTCGCCAATGGAGAAACC-CCAT 897
||||||||||||||||||| |||||||||||| || |||||||||||||||| || ||||
Sbjct 839 AACGATACAATTCGATTGAATCAGATCTCATAAATCCGTCGCCAATGGAGAA-CCACCAT 897
Query 898 GTGGT-GATG-CAGAGAAAAGAGAGGCACGATGTTATGCCGTATAATTCGTATCATCAAT 955
||||| | || | ||||| ||||| || |||||||||||||||| ||||||||| |||
Sbjct 898 GTGGTAG-TGTC-GAGAAGGGAGAGACATGATGTTATGCCGTATAGTTCGTATCAACAAA 955
Query 956 CACGTAAGACACCGAGAAAGAAGACAATG-TACGAGAAACAAAGATCAGTGAAAGATTAC 1014
|| ||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||
Sbjct 956 CAGGTAAGACACCGAGGAAGAAGACAAGGAT-CGAGAAACAAAGATCAGTGAAAGATTAC 1014
Query 1015 GATCGTGGCCGAACTTCACCGTACTTATCGAGGAACGGAACACCGTTGAGATCGAACATC 1074
|||||||||||| |||| ||||||||||||| | |||||||||| |||||||| |||||
Sbjct 1015 GATCGTGGCCGAGCTTCCCCGTACTTATCGAAGCACGGAACACCATTGAGATCAAACATT 1074
Query 1075 ATCGCATCTACTCCTATGAGATCGAAC 1101
|||||||||||||| |||||||| |||
Sbjct 1075 ATCGCATCTACTCCGATGAGATCTAAC 1101
Score = 948 bits (513), Expect = 0.0
Identities = 582/616 (94%), Gaps = 2/616 (0%)
Strand=Plus/Plus
Query 1120 ATGCGGTCCAACATGGTTGGTTCGACTCCGAGGAGATCAAACATCGTCGGATCTACCCCG 1179
|||||||| |||||||||||||||||||| | ||||||||||||||||||||| ||||||
Sbjct 1192 ATGCGGTCTAACATGGTTGGTTCGACTCCAATGAGATCAAACATCGTCGGATCAACCCCG 1251
Query 1180 ATCCGTTCAAACTATATGGCTACACCGATGAGAACTCATCACGATTTTGGTACACCAGTG 1239
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 ATCCGATCAAACTACATGGCTACACCGATGAGAACTCATCACGATTTTGGTACACCAGTG 1311
Query 1240 AGGAATTTAGCTGGAAGACGAATCCTAACTGAATCGGAGTTAGGTCCATCGCCATCTGAA 1299
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1312 AGGAATTTAGCTGGAAGACGAATCTTAACTGAATCGGAGTTAGGACCATCGCCATCTGAA 1371
Query 1300 GTGGCTGACAAATTGGCAAAAGATAGATCGCACGAAACAGAAAGTTCAATACTCAGCGAA 1359
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1372 GTGGCTGACAAATTGGCGAAAGATAGATCGCACGAAACGGAAAGTTCAATACTCAGCGAA 1431
Query 1360 TGGAGCATCGATGAATCTAGCATCGAAGGATTGCGTTCAAAACTCGAGAGATGGCGAACA 1419
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1432 TGGAGCATCGATGAATCTAGCATCGAAGGATTGCGATCAAAACTCGAGAGATGGCGAACA 1491
Query 1420 GAGCTTCCACCATTATACGACATAGGATCAAGCCACATAAGTAGCAGCA-ATTACGATGG 1478
||||||||||| || |||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 1492 GAGCTTCCACCGTTGTACGACATAGGATCAAGCCATATAAGTAGCA-CTGATTACGATGG 1550
Query 1479 TGCAAGTGTTCCCGCCGCAACTGCCGGGGGAGGAATGAGTTCAAGACGGAAAACTCCGAC 1538
|| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 CGCGAGCGTTCCAGCTGCAACTGCCGGGGGAGGAATGAGTTCAAGACGGAAAACTCCGAC 1610
Query 1539 GGCAAAAAAGCATAACCGCCGTCACACAGATGGAGGTAATGGACTTTTCTCGTGTTTTAG 1598
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 GACGAAAAAGCATAACCGCCGTCACACAGATGGAGGTAATGGACTTTTCTCGTGTTTTAG 1670
Query 1599 TAAGATTTGCGGCGTGGAATGCAGTTTCGTATGCGGTGGTGGTGGTGGTCAAATGGCCTC 1658
||||||||| || ||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 1671 TAAGATTTGTGGTGTGGAATGCAGTTTCGTATGCGGTGGTGGTGGTGGGCCGATGGTCTC 1730
Query 1659 TGAAGGATCTACCAAGAAAGGTGGGGCCGGACGTGTGCAACGCACATATTCCGCTGACGA 1718
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1731 AGAAGGATCTACTAAGAAAGGTGGAGCCGGACGTGTGCAACGCACATATTCCGCTGACGA 1790
Query 1719 TTTGAGCTTTGTGTGA 1734
| ||||||||||||||
Sbjct 1791 TCTGAGCTTTGTGTGA 1806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85742530860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5