BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470436 Length=1153 Score E Sequences producing significant alignments: (Bits) Value AT1G04550.2 | Symbols: IAA12, BDL | AUX/IAA transcriptional reg... 1598 0.0 > AT1G04550.2 | Symbols: IAA12, BDL | AUX/IAA transcriptional regulator family protein | chr1:1240375-1242121 FORWARD LENGTH=1238 Length=1238 Score = 1598 bits (865), Expect = 0.0 Identities = 982/1038 (95%), Gaps = 10/1038 (1%) Strand=Plus/Plus Query 116 GTATCTTTGGAGTCTAGGGTTTTGTTATTGACATGCGTGGTGTTTCAGAATTGGAGGCGG 175 ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 176 GTATCATTGGAGTCTAGGGTTTTGTTATTGACATGCGTGGTGTGTCAGAATTGGAGGTGG 235 Query 176 GGAAGTGTAATCTTCCGGCTGAGAGTGAGCTGGAATTGGGATTAGGGCTCAGCCTCGGCG 235 ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 236 GGAAGAGTAATCTTCCGGCGGAGAGTGAGCTGGAATTGGGATTAGGGCTCAGCCTCGGTG 295 Query 236 GTGGCGCGTGGAAAGAGCGTGGGAGGATTCTTACGGCTAAGGATTTTCCTTCGGTTGGGT 295 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 296 GTGGCGCGTGGAAAGAGCGTGGGAGGATTCTTACTGCTAAGGATTTTCCTTCCGTTGGGT 355 Query 296 CTAAACGCTCTGCTGAGTCGTCCTCTCATCAAGGAGCTTCTCCTCCTCGTTCAAGTCAAG 355 |||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| Sbjct 356 CTAAACGCTCTGCTGAATCTTCCTCTCACCAAGGAGCTTCTCCTCCTCGTTCAAGTCAAG 415 Query 356 TAGTGGGATGGCCACCAATTGGGTCACACAGGATGAATAGTTTGGTTAATAACCAAGCTA 415 | || ||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 416 TGGTAGGATGGCCACCAATTGGGTTACACAGGATGAACAGTTTGGTTAATAACCAAGCTA 475 Query 416 TGAAGGCAGCAAGAGCGGAAGAAGAAGACGGGGAGAAGAATGTCGTGAAGAATGATGAGC 475 |||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||| Sbjct 476 TGAAGGCAGCAAGAGCGGAAGAAGGAGACGGGGAGAAGAAAGTTGTGAAGAATGATGAGC 535 Query 476 TCAAAGATGTGTCAATGAAGGTGAATGGGAAAGTTCAGGGCTTAGGGTTTGTTAAGGTGA 535 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 536 TCAAAGATGTGTCAATGAAGGTGAATCCGAAAGTTCAGGGCTTAGGGTTTGTTAAGGTGA 595 Query 536 ATATGGATGGAGTTGGTATAGGCCGAAAAGTGGATATGAGAGCCCAGTCCTCTTACGAAA 595 ||||||||||||||||||||||| ||||||||||||||||||| || || |||||||||| Sbjct 596 ATATGGATGGAGTTGGTATAGGCAGAAAAGTGGATATGAGAGCTCATTCGTCTTACGAAA 655 Query 596 ACTTGGCTCAGACGCTTGAGGAAATGTTCTTTGGAATGACAGGTACTACTTCTCGAGAAA 655 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 656 ACTTGGCTCAGACGCTTGAGGAAATGTTCTTTGGAATGACAGGTACTACTTGTCGAGAAA 715 Query 656 AGGTTAAACCTTTAAGGCTTTTAGATGGATCATCAGACTTTGTACTCACTTATGAAGATA 715 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 AGGTTAAACCTTTAAGGCTTTTAGATGGATCATCAGACTTTGTACTCACTTATGAAGATA 775 Query 716 AGGAAGGCGATTGGATGCTTGTGGGCGATGTTCCATGGAGAATGTTTATCAACTCGGTGA 775 ||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 776 AGGAAGGGGATTGGATGCTTGTTGGAGATGTTCCATGGAGAATGTTTATCAACTCGGTGA 835 Query 776 AAAGGCTTCGGATCATGGGAACCTCAGAAGCTAGTGGACTAGCTCCAAGACATCAAGAAC 835 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 836 AAAGGCTTCGGATCATGGGAACCTCAGAAGCTAGTGGACTAGCTCCAAGACGTCAAGAGC 895 Query 836 AGAAGGATAGACAAAGAAACAAACCTGTTTAGCTTCCCTTCCAAAGCTGGCATTGTTTAT 895 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 896 AGAAGGATAGACAAAGAAACAACCCTGTTTAGCTTCCCTTCCAAAGCTGGCATTGTTTAT 955 Query 896 GTGttttttttttttttGAGGTTTGCAAGTTTACTCAATACTTTTGGAAGAAAGTATAAC 955 || || ||| ||||||||||| ||||||| |||||||| ||||||||||| Sbjct 956 GTATTGTTT--------GAGGTTTGCAA-TTTACTCGATACTTTTTGAAGAAAGTATTTT 1006 Query 956 GGAGAATATGGATAAAAGCATGCAGAAGCTTAGATTTGATTTTAATCCGGTTTTCGGATA 1015 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 1007 GGAGAATATGGATAAAAGCATGCAGAAGCTTAGATATGATTTGAATCCGGTTTTCGGATA 1066 Query 1016 TGGTTTTTCTTTAGGTCATTCAATTCGTAGTTTTCCAGTTTGTTTCTTCTTTGGCTGTGT 1075 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1067 TGGTTTTGCTT-AGGTCATTCAATTCGTAGTTTTCCAGTTTGTTTCTTCTTTGGCTGTGT 1125 Query 1076 ACCAATTGTCTCTGTTCTGAGAGAGAATGCTCTTGTTTATTTGTTCTCTCATATTGTAAA 1135 ||||||| ||| ||||||| ||||||| ||||||||||||||||||||||| |||||||| Sbjct 1126 ACCAATTATCTATGTTCTGTGAGAGAAAGCTCTTGTTTATTTGTTCTCTCAGATTGTAAA 1185 Query 1136 TAGTTGAAGTTATCTAAT 1153 |||||||||||||||||| Sbjct 1186 TAGTTGAAGTTATCTAAT 1203 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56576014215 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5