BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470438
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04560.1 | Symbols: | AWPM-19-like family protein | chr1:12... 1013 0.0
> AT1G04560.1 | Symbols: | AWPM-19-like family protein | chr1:1244947-1246059
FORWARD LENGTH=855
Length=855
Score = 1013 bits (548), Expect = 0.0
Identities = 666/720 (93%), Gaps = 20/720 (3%)
Strand=Plus/Plus
Query 1 GAAGGTAAAAGAGGAAATTGATGGCGACGACAGTGGGAAGAAACATAGCAGCACCATTGC 60
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 GAAGGTAAAAGAAGCAATTGATGGCGACGACAGTGGGAAGAAACATAGCAGCACCATTGC 163
Query 61 TGTTCTTGAATCTTGTTATGTACCTGATTGTGCTAGGTTTCGCAAGTTGGTGTCTCAATA 120
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 164 TGTTCTTGAATCTTGTTATGTACCTGATTGTGCTTGGTTTTGCAAGTTGGTGTCTCAATA 223
Query 121 AATACATCAACGGTCAAACTAATCACCCAAGTTTTGGAGGCAATGGAGCAACACCGTTCT 180
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 224 AATACATCAACGGCCAAACTAACCACCCAAGTTTTGGAGGCAATGGAGCAACACCGTTCT 283
Query 181 TCTTGACGTTTTCGATATTGGCGGCGGTGGTAGGAGTAGCGTCGAAGATTG-CCGGAGCT 239
||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||
Sbjct 284 TCTTGACGTTTTCGATATTGGCGGCTGTGGTAGGAGTAGCGTCGAAG-TTGGCCGGAGCA 342
Query 240 AATCATATTAGGTTTTGGAGGAATGATAGTCTGGCCGCTGCCGGAGCTTCTTCCATCGTT 299
|||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 343 AATCATATTAGGTTTTGGAGGAATGATAGTTTAGCCGCTGCTGGAGCTTCTTCCATCGTT 402
Query 300 GCATGGGCCATCACAGCTCTTGCCATGGGGTTGGCATGCAAGCAAATAAACATAGGAGGA 359
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 403 GCATGGGCTATCACAGCTCTTGCCATGGGGTTGGCATGCAAACAAATAAACATAGGAGGA 462
Query 360 TGGAGAGGATGGAGATTGAAGATGATTGAAGCCTTCATTATCATTTTGACGTTCACTCAA 419
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 463 TGGAGAGGATGGAGACTGAAGATGATTGAAGCCTTCATTATCATTTTGACGTTCACGCAG 522
Query 420 -TTGCTCTACGTCATGTTGATCCACGCCGGCGT-ATTGAGCAGCAAATATGGTCCTGGCT 477
|| |||||| ||||||||||||| ||||| | | | |||||||||||||||||||| |
Sbjct 523 CTT-CTCTACCTCATGTTGATCCATGCCGGT-TCACTCAGCAGCAAATATGGTCCTGGAT 580
Query 478 ACAGAGACCAGGACTACGCTACAGGCCAAGGTCATGGCCATGGTCATGGTCATGTACCAC 537
|||||||||| ||||| ||||||||||||| | | | |||||||||||||||||||||
Sbjct 581 ACAGAGACCAAGACTATGCTACAGGCCAAG--C-T--C-ATGGTCATGGTCATGTACCAC 634
Query 538 ACACTGTGGGCGAGCACAAGGCTGGTGTTGGAAGTACCATGGCAGTTTGAT-AAACGTC- 595
|||||||||| ||||||||||||||||||||| |||||||||||| |||| ||| ||
Sbjct 635 ACACTGTGGGAGAGCACAAGGCTGGTGTTGGATCTACCATGGCAGTCTGATGAAAA-TCT 693
Query 596 GTGTGTTTTAATTGTGTTTTGACGCTTGGATAAGAAGTACTTATGATGTGTAGTTTATGT 655
|||| ||||||||||||||||||| |||| |||||||||||||| || |||||||||
Sbjct 694 GTGTCTTTTAATTGTGTTTTGACGTTTGGTTAAGAAGTACTTATTAT----AGTTTATGT 749
Query 656 TTTTCCAAGTTATGTAATAATGTAATTC-TATCCATCTGACAAACGAACGAATCTTGTGT 714
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 750 TTTTTCAAGTTATGTAATAATGTAATTCCTATCCATCTGACAAACGAACGAATCTTGTGT 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5