BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470445 Length=1551 Score E Sequences producing significant alignments: (Bits) Value AT1G04620.1 | Symbols: | coenzyme F420 hydrogenase family / de... 2562 0.0 > AT1G04620.1 | Symbols: | coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family | chr1:1282741-1286584 REVERSE LENGTH=1609 Length=1609 Score = 2562 bits (1387), Expect = 0.0 Identities = 1503/1558 (96%), Gaps = 12/1558 (1%) Strand=Plus/Plus Query 1 tctctctctctcctctcgtc-tctctcGCTGAGCAACCATGATTAC--T-GTCACCTCCA 56 ||| ||||| || |||| || ||||| |||| |||||||||||||| | |||||||||| Sbjct 57 TCT-TCTCT-TCTTCTCTTCTTCTCTGGCTGGGCAACCATGATTACTGTCGTCACCTCCA 114 Query 57 AGCTCTCTCTCCTTCCTCCATG-CTTCTCTGTCGTTAACTCTTCATCTTCGCGTTCCAAA 115 ||||||||||||||||||| | |||||| |||||||||||||| ||||||||||||||| Sbjct 115 GGCTCTCTCTCCTTCCTCCA-GTCTTCTCCGTCGTTAACTCTTCTTCTTCGCGTTCCAAA 173 Query 116 GATATGAATAC-AGAGCCAAAAAAGAAAGTTAAACTAAGAGAAGACTGGAGAGAAAAGTC 174 ||||||||| | ||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 174 GATATGAAT-CTAGAGCCAAAAAAGAAGGTTAAATTAAGAGAAGACTGGAGAGAAAAGTC 232 Query 175 CAAACCTATCCCACCCGGAGGAACCTATCCAGCTAAAGACCATTGCAGTCGA-TGCGGGT 233 || ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 233 CAGACCTATCCCACCCGGAGGAACCTATCCAGCTAAAGACCATTGCAGTC-AGTGCGGGC 291 Query 234 TATGCGACACCTATTACATCGCCCATGTGAAGGAGGCATGTGCATTTCTTGGAGATGGAA 293 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 292 TATGCGACACCTACTACATTGCCCATGTGAAGGAGGCATGTGCATTTCTTGGAGATGGAA 351 Query 294 TGTCAAGGATTGAGAGCTTGGAGCCTGTTGTGCATGGTCGAGGAAGGAAACCAGATTCCT 353 |||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||| Sbjct 352 TGTCAAGGATTGAGAGCTTGGAACCTGTTGTGCATGGTAGAGGAAGGAAAGCAGATTCCT 411 Query 354 TAGAAGATACATATTTTGGGGTGCATCAAGAGCAGCTCTATGCTCGTAAGTTGAAGCCTG 413 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 TACAAGATACATATTTTGGGGTGCATCAAGAGCAGCTCTATGCTCGTAAGTTGAAGCCTG 471 Query 414 TTGAAGGAGCTCAGTGGACTGGAATTGTCACAACCATAGCCATTGAGATGCTGAAATCTA 473 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 TCGAAGGAGCTCAGTGGACTGGAATTGTCACAACCATAGCCATTGAGATGCTGAAATCTA 531 Query 474 ACATGGTTGAGGCTGTTGTTTGTGTGCAGAGTGATCCTGAAGACAGATTATCTCCAAGAC 533 | |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 ATATGGTTGAAGCTGTCGTTTGTGTGCAGAGTGATCCTGAAGACAGATTATCTCCAAGAC 591 Query 534 CAGTATTAGCCAGGACACCTGAAGAAGTTTTGGCTGCAAGAGGTGTCAAGCCAACTCTGT 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 CAGTATTAGCCAGGACACCTGAAGAAGTTTTGGCTGCAAGAGGTGTCAAGCCAACTCTGT 651 Query 594 CTCCTAATCTGAATACTCTTGAATTAATCGAGGCTTCCGGAGTGAAACGTCTTCTGTTTT 653 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 652 CTCCTAATCTGAATACTCTTGAATTAATCGAGGCTTCCGGAGTGAAGCGTCTTCTGTTTT 711 Query 654 GCGGTGTGGGTTGCCAAGTGCAAGCATTGAGATCAGTGGAGCAGCATCTGAATCTGGAGA 713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 712 GCGGTGTGGGTTGCCAAGTGCAAGCATTGAGATCAGTGGAGCAGCATCTGAATCTGGAAA 771 Query 714 AGTTGTATGTACTAGGCACCAATTGTGTGGACAATGGAACACGAGATGGACTAGACAAGT 773 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 772 AGTTGTATGTACTAGGCACCAATTGTGTGGACAACGGAACACGAGATGGACTAGACAAGT 831 Query 774 TTCTGAAAGCGGCTAGTAAGGAGCCAGAGACTGTTCTCCATTATGAATTTATGCAAGATT 833 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 832 TTCTGAAAGCAGCTAGTAAAGAGCCAGAGACTGTTCTCCATTATGAATTTATGCAAGATT 891 Query 834 ACAAGGTCCAACTCAAACACTTGGATGGACACATTGAAGAGGTTCCCTATTTCTCTCTAC 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 892 ACAAGGTCCAACTCAAACACTTGGATGGACACATTGAAGAGGTTCCCTATTTCTCTCTAC 951 Query 894 CAGCAAACGATTTAGTAGACGTCATAGCTCCATCGTGTTACAGCTGCTTTGATTACACAA 953 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 952 CTGCAAACGATTTAGTAGATGTCATAGCTCCATCGTGTTACAGCTGCTTTGATTACACAA 1011 Query 954 ATGCATTAGCGGATTTGGTTATCGGTTACATGGGTGTTCCGAGGTATTCAGGTCTGAACA 1013 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1012 ATGCATTAGCGGATTTGGTTATCGGTTACATGGGTGTTCCGAAGTATTCAGGTCTGAACA 1071 Query 1014 TGACTGACCATCCACAGTATATTACAGTGAGAAATGAACGCGGGAAAGAAATGCTCAGCT 1073 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1072 TGACTGACCATCCACAGTATATTACAGTGAGAAATGAACGTGGGAAAGAAATGCTCAGCT 1131 Query 1074 TGGTTGAAAACCTTTTGGAGATCACTCCAACAATCAGCAGCGGTGATCGGCGACCTTTTG 1133 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1132 TGGTAGAAAACCTTTTGGAGATCACTCCAACAATCAGCAGCGGTGATCGGCGACCTTTTG 1191 Query 1134 TGACAGAAACTGTTAAGGCAGACGATGATGCTAAGTTTGGTCGAGGTCCTGCTCAGCCAG 1193 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 1192 TGACAGAAACTGTTAAGGCAGACGATGCTGCTAAGTTTGGTCAAGGTCCTGCTCAGCCAG 1251 Query 1194 CGCCAATATTTGTTGGAAACATTATTGCGTTCATCCTAAGTTTGGTTGGTCCTAAGGGTC 1253 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1252 CGCCACTATTTGTTGGAAACATTATTGCGTTCATCCTAAATTTGGTTGGTCCTAAGGGTC 1311 Query 1254 TAGAATTCGCTCGGTACTCATTGGACTACCATACCATCAGAAACTATTTGCACGTAAACC 1313 ||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 1312 TAGAATTTGCTCGGTACTCGTTGGACTACCATACCATCAGAAACTATTTGTACGTAAACC 1371 Query 1314 GCAAATGGGGAAAGCAAAGAGCCAACAGCCACATGCCATCATATGCCAAAAAGATAGTGG 1373 |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 1372 GCAAATGGGGAAAGCAAAGAGCAAACACCCACATGCCATCATATGCCAAAAAGATAGTGG 1431 Query 1374 AAATGTACAACAAAAACGGCCAAATAGATAAAATGCTCTCCAAGAAATGAACATTTTAGG 1433 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1432 AAATGTACAACAAAAACGGCCAAATAGATAAAATGCTCTCCAAGAAATGAACATTTTAGG 1491 Query 1434 CCTTTCTCATGTAAGTTTGCAAATGTATATTTCATCCTACAAGTGAGTAAATGTACATTG 1493 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1492 CCTTTCTCATGTAAGTTTCCAAATGTATATTTCATCCTACAAGTGAGTAAATGTACATTG 1551 Query 1494 GTCCTACTCTTTCTCAACTTGTAGTATGATAGTAATATCCAAAACTATTTCCCTCGTG 1551 |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1552 GTCCTACTGTTTCTCAACTTGTAGTATGTTAGTAATATCCAAAACTATTTCCCTCGTG 1609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76555831125 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5